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14 pages, 1407 KiB  
Article
Black Soldier Fly Frass Fertilizer Outperforms Traditional Fertilizers in Terms of Plant Growth in Restoration in Madagascar
by Cédrique L. Solofondranohatra, Tanjona Ramiadantsoa, Sylvain Hugel and Brian L. Fisher
Sustainability 2025, 17(15), 7152; https://doi.org/10.3390/su17157152 - 7 Aug 2025
Abstract
Black soldier fly frass (BSFF) is a nutrient-rich organic byproduct with growing potential as a sustainable fertilizer. While its effects on crops have been studied, its impact on tree seedling development for reforestation remains poorly understood. This study evaluated the effect of BSFF [...] Read more.
Black soldier fly frass (BSFF) is a nutrient-rich organic byproduct with growing potential as a sustainable fertilizer. While its effects on crops have been studied, its impact on tree seedling development for reforestation remains poorly understood. This study evaluated the effect of BSFF on the growth and survival of two native Malagasy tree species: the fast-growing Dodonaea madagascariensis and the slow-growing Verpis macrophylla. A six-month nursery experiment tested three BSFF application rates (half-, one-, and two-fold nitrogen equivalence), along with cattle manure, synthetic NPK, and a no-fertilizer control. The survival was highest in the half-fold BSFF (95% for D. madagascariensis, 87.5% for V. macrophylla) and lowest in BSFF two-fold (0% and 22.5%, respectively) treatments. NPK also significantly reduced the survival (5% for D. madagascariensis, 17.5% for V. macrophylla). The growth responses were most pronounced in D. madagascariensis, where the BSFF half- and one-fold treatments led to height growth rates that were 2.0–2.7 times higher than that of the control, cattle manure, and NPK treatments, and diameter growth that was 1.8–2.3 times higher. The biomass accumulation was also significantly higher under the BSFF half- and one-fold treatments for D. madagascariensis. In contrast, V. macrophylla showed limited response to the treatments. These findings indicate that calibrated BSFF application can enhance seedling performance in reforestation efforts, particularly for fast-growing species. Notably, the growth rate of D. madagascariensis doubled (in terms of cm/month) under optimal BSFF treatment—a critical advantage, as time is a key constraint in reforestation and faster growth directly supports more efficient forest restoration. This highlights BSFF’s potential as a sustainable and locally available input for forest restoration in Madagascar. Full article
(This article belongs to the Section Sustainability, Biodiversity and Conservation)
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32 pages, 5440 KiB  
Article
Spatially Explicit Tactical Planning for Redwood Harvest Optimization Under Continuous Cover Forestry in New Zealand’s North Island
by Horacio E. Bown, Francesco Latterini, Rodolfo Picchio and Michael S. Watt
Forests 2025, 16(8), 1253; https://doi.org/10.3390/f16081253 - 1 Aug 2025
Viewed by 173
Abstract
Redwood (Sequoia sempervirens (Lamb. ex D. Don) Endl.) is a fast-growing, long-lived conifer native to a narrow coastal zone along the western seaboard of the United States. Redwood can accumulate very high amounts of carbon in plantation settings and continuous cover forestry [...] Read more.
Redwood (Sequoia sempervirens (Lamb. ex D. Don) Endl.) is a fast-growing, long-lived conifer native to a narrow coastal zone along the western seaboard of the United States. Redwood can accumulate very high amounts of carbon in plantation settings and continuous cover forestry (CCF) represents a highly profitable option, particularly for small-scale forest growers in the North Island of New Zealand. We evaluated the profitability of conceptual CCF regimes using two case study forests: Blue Mountain (109 ha, Taranaki Region, New Zealand) and Spring Creek (467 ha, Manawatu-Whanganui Region, New Zealand). We ran a strategic harvest scheduling model for both properties and used its results to guide a tactical-spatially explicit model harvesting small 0.7 ha units over a period that spanned 35 to 95 years after planting. The internal rates of return (IRRs) were 9.16 and 10.40% for Blue Mountain and Spring Creek, respectively, exceeding those considered robust for other forest species in New Zealand. The study showed that small owners could benefit from carbon revenue during the first 35 years after planting and then switch to a steady annual income from timber, maintaining a relatively constant carbon stock under a continuous cover forestry regime. Implementing adjacency constraints with a minimum green-up period of five years proved feasible. Although small coupes posed operational problems, which were linked to roading and harvesting, these issues were not insurmountable and could be managed with appropriate operational planning. Full article
(This article belongs to the Section Forest Operations and Engineering)
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17 pages, 2166 KiB  
Article
Effects of Fertilizer Application on Growth and Stoichiometric Characteristics of Nitrogen, Phosphorus, and Potassium in Balsa Tree (Ochroma lagopus) Plantations at Different Slope Positions
by Jialan Chen, Weisong Zhu, Yuanxi Liu, Gang Chen, Juncheng Han, Wenhao Zhang and Junwen Wu
Plants 2025, 14(14), 2221; https://doi.org/10.3390/plants14142221 - 18 Jul 2025
Viewed by 268
Abstract
Ochroma lagopus, a fast-growing tropical tree species, faces fertilization challenges due to slope heterogeneity in plantations. This study examined 3-year-old Ochroma lagopus at upper and lower slope positions under five treatments: CK (no fertilizer), F1 (600 g/plant), F2 (800 g/plant), F3 (1000 [...] Read more.
Ochroma lagopus, a fast-growing tropical tree species, faces fertilization challenges due to slope heterogeneity in plantations. This study examined 3-year-old Ochroma lagopus at upper and lower slope positions under five treatments: CK (no fertilizer), F1 (600 g/plant), F2 (800 g/plant), F3 (1000 g/plant), and F4 (1200 g/plant) of secondary macronutrient water-soluble fertilizer. Growth parameters and N-P-K stoichiometry were analyzed. Key results: (1) Height increased continuously with fertilizer dosage at both slopes, while DBH peaked and then declined. (2) At upper slopes (nutrient-poor soil), fertilization elevated leaf P but reduced branch N/K and increased root P/K. At lower slopes (nutrient-rich soil), late-stage leaf N increased significantly, with roots accumulating P/K via a “storage strategy”. Stoichiometric thresholds indicated N-K co-limitation (early-mid stage) shifting to P limitation (late stage) on upper slopes and persistent N-K co-limitation on lower slopes. (3) PCA identified F4 (1200 g/plant) and F1 (600 g/plant) as optimal for upper and lower slopes, respectively. This research provides a theoretical basis for precision fertilization in Ochroma lagopus plantations, emphasizing slope-specific nutrient status and element interactions for dosage optimization. Full article
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18 pages, 24780 KiB  
Article
Performance of Polystyrene-Impregnated and CCA-Preserved Tropical Woods Against Subterranean Termites in PNG Field and Treatment-Induced Color Change
by Yusuf Sudo Hadi, Cossey Yosi, Paul Marai, Mahdi Mubarok, Imam Busyra Abdillah, Rohmah Pari, Gustan Pari, Abdus Syukur, Lukmanul Hakim Zaini, Dede Hermawan and Jingjing Liao
Polymers 2025, 17(14), 1945; https://doi.org/10.3390/polym17141945 - 16 Jul 2025
Viewed by 298
Abstract
Logs supplied in Papua New Guinea and Indonesia are predominantly sourced from fast-growing tree species of plantation forests. The timber primarily consists of sapwood, which is highly susceptible to biodeterioration. At a training center, CCA (chromated copper arsenate) is still used for wood [...] Read more.
Logs supplied in Papua New Guinea and Indonesia are predominantly sourced from fast-growing tree species of plantation forests. The timber primarily consists of sapwood, which is highly susceptible to biodeterioration. At a training center, CCA (chromated copper arsenate) is still used for wood preservation, while in the wood industry, ACQ (alkaline copper quaternary) is commonly applied to enhance the service life of timber. In the future, polystyrene impregnation or other non-biocidal treatments could potentially serve this purpose. This study aimed to determine the discoloration and resistance of polystyrene-impregnated and CCA-preserved woods. Wood samples, Anisoptera thurifera and Octomeles sumatrana from Papua New Guinea, and Anthocephalus cadamba and Falcataria moluccana from Indonesia, were used. The wood samples were treated with polystyrene impregnation, CCA preservation, or left untreated, then exposed at the PNG Forest Research Institute site for four months. After treatment, the color change in polystyrene-impregnated wood was minor, whereas CCA-preserved wood exhibited a noticeably different color compared to untreated wood. The average polymer loading for polystyrene-impregnated wood reached 147%, while the average CCA retention was 8.4 kg/m3. Densities of untreated-, polystyrene-, and CCA-wood were 0.42, 0.64, and 0.45 g/cm3, respectively, and moisture contents were 15.8%, 9.4%, and 13.4%, respectively. CCA preservation proved highly effective in preventing termite attacks; however, CCA is hazardous to living organisms, including humans. Polystyrene impregnation also significantly improved wood resistance to subterranean termites, as indicated by lower weight loss and a higher protection level compared to untreated wood. Additionally, polystyrene treatment is nonhazardous and safe for living organisms, making it a promising option for enhancing wood resistance to termite attacks in the future as an alternative to the biocides currently in use. Full article
(This article belongs to the Section Polymer Applications)
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17 pages, 2220 KiB  
Article
Soil Prokaryotic Diversity Responds to Seasonality in Dehesas, Modulated by Tree Identity and Canopy Effect
by José Manjón-Cabeza, Mercedes Ibáñez, María José Leiva, Cristina Chocarro, Anders Lanzén, Lur Epelde and Maria Teresa Sebastià
Microbiol. Res. 2025, 16(7), 153; https://doi.org/10.3390/microbiolres16070153 - 5 Jul 2025
Viewed by 199
Abstract
Dehesas are mosaics of open grassland and standalone trees that are diversity reservoirs. However, they have recently faced abandonment and intensification, being replaced by plantations of fast-growing trees or subject to encroachment. Following a change in dehesa communities and structure, a change in [...] Read more.
Dehesas are mosaics of open grassland and standalone trees that are diversity reservoirs. However, they have recently faced abandonment and intensification, being replaced by plantations of fast-growing trees or subject to encroachment. Following a change in dehesa communities and structure, a change in soil microbial diversity and functionality in dehesas is expected, but dehesas’ microbial diversity is still a big unknown. In this work, we bring to light the soil prokaryotic taxonomic diversity in dehesa ecosystems and present a first approach to assessing their metabolic diversity through metabarcoding data. For this, we compared three dehesas dominated by different tree species: (i) one dehesa dominated by Quercus ilex; (ii) one dominated by Pinus pinea; and (iii) one dominated by a mixture of Q. ilex and Q. suber. At each dehesa, samples were taken under the canopy and in the open grassland, as well as through two seasons of peak vegetation productivity (autumn and spring). Our results show the following findings: (1) seasonality plays an important role in prokaryotic richness, showing higher values in autumn, and higher evenness in spring; (2) the effect of seasonality on the soil’s prokaryotic diversity is often modulated by the effect of tree species and canopy; (3) taxonomic diversity is driven mainly by the site effects, i.e., the opposite of the metabolic diversity that seemed to be driven by complex interactions among seasons, tree species, and canopies. Full article
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21 pages, 2985 KiB  
Article
Characterization of Biochar from Hovenia dulcis Thunb. and Mimosa scabrella Benth. Species from the Mixed Ombrophyllous Forest
by Florian Empl, Miriam Schatzl, Sonja Kleucker, Alexandre Techy de Almeida Garrett, Fernando Augusto Ferraz, Luiz Henrique Natalli, Dimas Agostinho da Silva, Eduardo da Silva Lopes, Afonso Figueiredo Filho and Stefan Pelz
Forests 2025, 16(7), 1077; https://doi.org/10.3390/f16071077 - 27 Jun 2025
Viewed by 366
Abstract
The Mixed Ombrophyllous Forest (MOF), inserted in the Atlantic Forest biome, is of great ecological value, with deficient management strategies. In this context, sustainable management helps to promote the regeneration and growth of individual trees and control others, while maintaining the natural forest [...] Read more.
The Mixed Ombrophyllous Forest (MOF), inserted in the Atlantic Forest biome, is of great ecological value, with deficient management strategies. In this context, sustainable management helps to promote the regeneration and growth of individual trees and control others, while maintaining the natural forest structure. This study therefore aimed to discuss opportunities and limitations of biochar, produced from two species from the MOF, which are currently only utilized to a limited extent in the study area in southern Brazil. A slow pyrolysis process at a lab scale was designed, biochar was produced, and key properties were analyzed from Hovenia dulcis Thunb. (chosen as an invasive species) and Mimosa scabrella Benth. (chosen as a native, fast-growing species), including branches and stems. The results showed that branches of Mimosa scabrella (BMS) had the highest biochar yield (30.32 ± 0.3%) and the highest electrical conductivity (415.08 ± 24.75 mS cm−1). Stems of Mimosa scabrella (SMS) showed the highest higher heating value (HHV—31.76 ± 0.01 MJ kg−1), lower heating value (LHV—31.03 ± 0.01 MJ kg−1), and energy yield (49.1%), while the branches of Hovenia dulcis (BHD) showed the lowest values. For the elemental analysis, SMS showed the best results, with the highest amount of fixed carbon (78.62 ± 0.22%) and carbon content (85.87 ± 0.083%), and consequently the lowest amount of ash (3.52 ± 0.08%). BHD showed a better water-holding capacity (303.26 ± 15.21%) and higher pH value (7.65 ± 0.14). The investigations conducted on the biochar from both species indicate a strong suitability of these woods for producing high-quality biochar. Full article
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35 pages, 4148 KiB  
Review
Alternative Wood Raw Material Sources in Particleboard and OSB Production—Challenges and Perspectives
by Dorota Dukarska, Jakub Kawalerczyk, Ján Sedliačik, Petar Antov and Mehr Unisa
Polymers 2025, 17(13), 1760; https://doi.org/10.3390/polym17131760 - 26 Jun 2025
Viewed by 543
Abstract
This review examines the potential use of alternative wood raw materials, including fast-growing plantation species, juvenile wood, non-plantation species, and recycled wood, in the production of particleboard (PB) and oriented strand board (OSB). In light of the ongoing challenges faced by the wood-based [...] Read more.
This review examines the potential use of alternative wood raw materials, including fast-growing plantation species, juvenile wood, non-plantation species, and recycled wood, in the production of particleboard (PB) and oriented strand board (OSB). In light of the ongoing challenges faced by the wood-based industry in securing a stable and sustainable supply of raw materials, these alternatives present several advantages, such as cost-effectiveness, greater availability, and reduced reliance on natural forest resources. Fast-growing plantation species and juvenile wood are particularly suited for lightweight applications, while non-plantation species and recycled wood contribute to sustainability goals by lowering environmental impact and promoting resource efficiency. Nonetheless, the successful integration of these materials requires overcoming certain challenges, including variability in their physical and mechanical properties, as well as the need for tailored adhesive systems and processing parameters. This review examines strategies to optimize production processes and enhance the utilization of waste materials while emphasizing the role of alternative raw materials in advancing circular economy principles. The findings highlight the importance of future research to improve material knowledge, technological solutions, and industry practices, thereby supporting the sustainable development of the wood-based materials sector. Full article
(This article belongs to the Special Issue Eco-Friendly Wood-Based Composites—Challenges and Prospects)
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15 pages, 2674 KiB  
Article
Transcriptome of Two-Hybrid Poplar (Populus alba × P. tomentiglandulosa) During Adventitious Root Formation After Stem Cutting
by Siyeon Byeon and Il Hwan Lee
Biology 2025, 14(7), 751; https://doi.org/10.3390/biology14070751 - 23 Jun 2025
Viewed by 345
Abstract
Poplar (Populus spp.) is an economically and ecologically important temperate tree species known for its rapid growth. Clonal propagation has facilitated genetic advancements, but it remains challenging due to substantial variations in rooting capacity among poplar species and clones. Poplar clones were [...] Read more.
Poplar (Populus spp.) is an economically and ecologically important temperate tree species known for its rapid growth. Clonal propagation has facilitated genetic advancements, but it remains challenging due to substantial variations in rooting capacity among poplar species and clones. Poplar clones were divided into two groups based on their rooting ability (high or low), and their transcriptome was analyzed for 3 weeks following stem-cutting propagation to investigate the rooting mechanisms of a hybrid of two fast-growing poplar species (Populus alba × P. tomentiglandulosa). The root length and area of the high-rooting group were 668.7% and 198.4% greater than those of the low-rooting ability group, respectively (maximum p < 0.001). Compared to week 0, genes involved in auxin signaling, cell wall organization, and secondary metabolite biosynthesis were consistently upregulated at 1, 2, and 3 weeks after planting, respectively. The expression of genes associated with cell wall differentiation and flavonoid biosynthesis was greater in the high- than in the low-rooting group at week 2. MYB and AP2/ERF transcription factors, which regulate flavonoid biosynthesis, as well as chalcone isomerase, a key enzyme in early flavonoid biosynthesis and root formation, were upregulated in the high-rooting group. The flavonoid biosynthesis pathway is important in rooting after stem cutting of Populus alba × P. tomentiglandulosa hybrids. Full article
(This article belongs to the Special Issue Molecular Biology of Plants)
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50 pages, 11097 KiB  
Article
Integrating 3D-Printed and Natural Staghorn Coral (Acropora cervicornis) Restoration Enhances Fish Assemblages and Their Ecological Functions
by Edwin A. Hernández-Delgado, Jaime S. Fonseca-Miranda, Alex E. Mercado-Molina and Samuel E. Suleimán-Ramos
Diversity 2025, 17(7), 445; https://doi.org/10.3390/d17070445 - 23 Jun 2025
Viewed by 1452
Abstract
Coral restoration is essential for recovering depleted populations and reef ecological functions. However, its effect on enhancing fish assemblages remains understudied. This study investigated the integration of 3D-printed and natural Staghorn coral (Acropora cervicornis) out-planting to assess their role in enhancing [...] Read more.
Coral restoration is essential for recovering depleted populations and reef ecological functions. However, its effect on enhancing fish assemblages remains understudied. This study investigated the integration of 3D-printed and natural Staghorn coral (Acropora cervicornis) out-planting to assess their role in enhancing benthic spatial complexity and attracting fish communities. Conducted between 2021 and 2023 at Culebra Island, Puerto Rico, we employed a before-after-control-impact (BACI) design to test four treatments: natural A. cervicornis, 3D-printed corals, mixed stands of 3D-printed and natural corals, and non-restored controls. Fish assemblages were monitored through stationary counts. Results showed that integrating 3D-printed and natural corals enhanced fish assemblages and their ecological functions. Significant temporal changes in fish community structure and biodiversity metrics were observed, influenced by treatment and location. Herbivore abundance and biomass increased over time, especially in live coral and 3D-printed plots. Reefs with higher rugosity exhibited greater Scarid abundance and biomass post-restoration. Piscivore abundance also rose significantly over time, notably at Tampico site. Fishery-targeted species density and biomass increased, particularly in areas with live and 3D-printed coral out-plants. Fish assemblages became more complex and diverse post-restoration, especially at Tampico, which supported greater habitat complexity. Before restoration, fish assemblages showed a disturbed status, with biomass k-dominance curves above abundance curves. Post-out-planting, this trend reversed. Control sites showed no significant changes. The study demonstrates that restoring fast-growing branching corals, alongside 3D-printed structures, leads to rapid increases in abundance and biomass of key fishery species, suggesting its potential role promoting faster ecosystem recovery and enhanced coral demographic performance. Full article
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24 pages, 1593 KiB  
Article
Determination of Strength Improvements in the Acacia Hybrid Through the Combination of Age Groups at the Air-Dry Conditioning Stage
by Fanthy Moola Malek, Gaddafi Ismaili, Noor Azland Jainudin, Meekiong Kalu, Mohd Effendi Wasli, Ahmad Fadzil Jobli, Mohamad Zain Hashim, Ahmad Nurfaidhi Rizalman, Nur Syahina Yahya and Semilan Ripot
Forests 2025, 16(7), 1048; https://doi.org/10.3390/f16071048 - 23 Jun 2025
Viewed by 406
Abstract
Acacia hybrid is an important plantation species in Malaysia, but its use in structural applications is still limited due to the lack of comprehensive data on its engineering properties. This study evaluated the physical and mechanical properties of laminated or glulam Acacia hybrid [...] Read more.
Acacia hybrid is an important plantation species in Malaysia, but its use in structural applications is still limited due to the lack of comprehensive data on its engineering properties. This study evaluated the physical and mechanical properties of laminated or glulam Acacia hybrid timber in an air-dried condition for three age group combinations (7//10, 10//13, and 7//13 years old) to determine the optimal combination for structural applications. The results showed that the 10//13-year-old combination had the best mechanical performance, along with the highest basis density (0.7099 g/cm3), highest modulus of elasticity (MOE) (16,335.6 N/mm2), and highest parallel compressive strength (56.998 N/mm2), while the 7//10-year-old combination showed the highest moisture content (14.94%) and highest perpendicular compressive strength (8.9256 N/mm2). This study demonstrated that the combination of juvenile wood (7 years old) with mature wood (10 or 13 years old) increased strength by up to 43.06%, thus optimising the potential of Acacia hybrid in the construction industry. All combinations meet SG5 standards, with the 10//13-year-old combination recommended as the best choice for high-performance applications of glulam products. Full article
(This article belongs to the Special Issue Wood Quality and Mechanical Properties: 2nd Edition)
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17 pages, 2562 KiB  
Article
Responses of Biomass and Allometric Growth Equations of Juvenile Mangrove Plants to Salinity, Flooding, and Aboveground Competition
by Kaijie Hu, Wei Wang, Wei Qian, Nong Sheng, Jiliang Cheng and Yanmei Xiong
Horticulturae 2025, 11(7), 712; https://doi.org/10.3390/horticulturae11070712 - 20 Jun 2025
Viewed by 382
Abstract
China has implemented large-scale mangrove restoration and afforestation initiatives in recent years. However, there has been a paucity of research on the growth of mangrove seedlings in a composite stress environment and the allometric growth equation of mangrove seedlings. To enhance juvenile mangrove [...] Read more.
China has implemented large-scale mangrove restoration and afforestation initiatives in recent years. However, there has been a paucity of research on the growth of mangrove seedlings in a composite stress environment and the allometric growth equation of mangrove seedlings. To enhance juvenile mangrove survival rates and develop precise carbon sequestration models, this study examines biomass accumulation patterns and allometric equation development under diverse environmental and biological conditions. A manipulative field experiment employed a three-factor full factorial design using seedlings from eight mangrove species. The experimental design incorporated three variables: salinity, flooding (environmental stressors), and aboveground interspecific competition (a biological factor). Following a two-year growth period, measurements of surviving seedlings’ basal diameter, plant height, and above- and belowground biomass were collected to assess growth responses and construct allometric models. Results indicated that high salinity reduced total mangrove biomass, whereas prolonged flooding increased tree height. Interspecific competition favored fast-growing species (e.g., Sonneratia caseolaris) while suppressing slow-growing counterparts (e.g., Avicennia marina). Synergistic effects between salinity and flooding influenced biomass and basal diameter, whereas salinity–flooding and salinity–competition interactions demonstrated antagonistic effects on tree height. High salinity, prolonged flooding, and competition elevated the proportion of aboveground biomass allocation. The results suggest that salinity stress and flooding stress were major growth-limiting factors for juvenile mangroves. Slow-growing species are not suitable to be mixed with fast-growing species in mangrove afforestation projects. Allometric models fitting for juvenile mangroves growing under different environmental factors were also developed. This study deepens our understanding of the growth of mangrove seedlings under composite stress conditions, provides effective tools for assessing the carbon sink potential of mangrove seedlings, and provides scientific guidance for future mangrove restoration projects. Full article
(This article belongs to the Section Biotic and Abiotic Stress)
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21 pages, 2365 KiB  
Article
Hormonal and Storage Metabolic Regulation of Germination in Toona sinensis
by Linyue Liu, Zhiyuan Wang, Yu Wu and Yongbao Shen
Horticulturae 2025, 11(6), 685; https://doi.org/10.3390/horticulturae11060685 - 15 Jun 2025
Viewed by 852
Abstract
Toona sinensis (A. Juss.) Roem, classified under the Toona genus of the Meliaceae family, is a fast-growing, woody species endemic to China, valued as both a vegetable crop and medicinal plant. Its seeds achieve rapid germination through a cascade of interconnected physiological, metabolic, [...] Read more.
Toona sinensis (A. Juss.) Roem, classified under the Toona genus of the Meliaceae family, is a fast-growing, woody species endemic to China, valued as both a vegetable crop and medicinal plant. Its seeds achieve rapid germination through a cascade of interconnected physiological, metabolic, and hormonal adaptations. Initially, physiological hydration is driven and accelerated by only two distinct phases of water imbibition. This hydration surge triggers storage reserve mobilization, with soluble sugars, proteins, and lipids undergoing rapid degradation during imbibition, while starch catabolism proceeds gradually—a pattern mirrored by progressive increases in enzymatic activities (amylase, protease, and acid phosphodiesterase (ACP)) that correlate with reserve reallocation. Concurrently, a metabolic shift from glycolysis to the pentose phosphate pathway (PPP) optimizes energy utilization, supporting germination acceleration. These biochemical changes are orchestrated by hormonal coordination: elevated gibberellin A3 (GA3), zeatin riboside (ZR), and indole-3-acetic acid (IAA) levels, coupled with rising GA3/ABA, IAA/ABA, and ZR/ABA ratios, temporally aligned with germination progression. Finally, structural evidence confirms successful germination completion, as cotyledon lipid droplet breakdown and starch granule synthesis directly correlate with embryonic elongation. Together, these mechanisms underscore T. sinensis’ adaptive strategy, integrating physiological plasticity, metabolic flexibility, and endocrine precision to ensure efficient germination. Full article
(This article belongs to the Collection Seed Dormancy and Germination of Horticultural Plants)
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21 pages, 2267 KiB  
Article
Enhancing African Catfish (Clarias gariepinus) Aquaculture in Uganda: Insights into Hatchery Propagation, Population Suitability, and Broodstock Management
by Gerald Kwikiriza, Sylvie Muwanga Tebitendwa, Philip Rwezawula, Waiswa Wilson Mwanja, Ivan Abaho and Harald Meimberg
Fishes 2025, 10(6), 290; https://doi.org/10.3390/fishes10060290 - 14 Jun 2025
Viewed by 2261
Abstract
The African catfish, Clarias gariepinus, is among the most farmed fish species in Uganda’s rapidly growing aquaculture sub-sector. The enhanced growth performance, increased survival, and resilience to environmental stressors have driven a rising demand among farmers for improved African catfish broodstock and [...] Read more.
The African catfish, Clarias gariepinus, is among the most farmed fish species in Uganda’s rapidly growing aquaculture sub-sector. The enhanced growth performance, increased survival, and resilience to environmental stressors have driven a rising demand among farmers for improved African catfish broodstock and seed. Until recently, most studies of this species have focused on nutrition, physiology, and culture systems, with little known about the genetics, broodstock, and hatchery management of the cultured C. gariepinus populations. This knowledge gap has led to inbreeding depression, resulting in poor seed quality and reduced performance of the broodstock. To enhance catfish aquaculture production, a survey was conducted across multiple catfish hatcheries and farms in Uganda. Using semi-structured questionnaires, the study assessed broodstock management practices, hatchery propagation methods, the suitability of various populations, demographics, challenges, and prospects of hatchery operators. Responses were coded, and descriptive statistics such as frequency, percentages, and means were calculated. Results indicate that there are farmers who continue to source their broodstocks from the natural water bodies in addition to acquiring them from fellow farmers. The estimated effective population size (Ne) for the majority of the respondents was 133.33 and 178.22, with an average breeding coefficient of 0.4% and 0.3%, respectively. There is also a continuous use of shooters (fast-growing cannibalistic fish) by the farmers who hatch and select them to be used as broodstocks later, under the assumption that they have superior genetic traits. The reported hatchability rate was above 70%, with an average survival rate of 60% from larvae to fry. The study identified diseases, inadequate water supply, and electricity as the primary challenges for catfish breeding. While Uganda’s African catfish aquaculture industry is expanding rapidly, certain hatchery practices pose significant risks to its sustainability if not properly addressed. Full article
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18 pages, 1399 KiB  
Article
Of Short Interspersed Nuclear Elements, Long Interspersed Nuclear Elements and Leeches: Identification and Molecular Characterization of Transposable Elements in Leech Genomes
by Christian Müller
DNA 2025, 5(2), 30; https://doi.org/10.3390/dna5020030 - 10 Jun 2025
Viewed by 352
Abstract
Backround/Objectives: Mobile genetic elements (MGEs), in general, and transposable elements (TEs), in particular, constitute a major part of almost every eukaryotic genome, and several types of such elements have been classified based on size, genetic structure and transposition intermediate. Methods: The fast-growing availability [...] Read more.
Backround/Objectives: Mobile genetic elements (MGEs), in general, and transposable elements (TEs), in particular, constitute a major part of almost every eukaryotic genome, and several types of such elements have been classified based on size, genetic structure and transposition intermediate. Methods: The fast-growing availability of whole genome sequences of species across the living world provides almost unlimited possibilities for in-depth molecular analyses of all kinds, including the search for TEs. The aim of the present study was to perform the first molecular description and characterization of selected MGEs in leeches, namely, short interspersed nuclear element (SINE), long interspersed nuclear element (LINE) and long terminal repeat (LTR) retrotransposons. Results: Several representatives of all three groups of TEs could be identified, and some of the newly described elements display unique structural features compared to the archetype elements of the respective groups. Conclusions: Non-model organisms like leeches are an excellent source for new information on long-term studied objects like TEs and may provide new insights into the diversity and the putative biological impact of these MGEs. Full article
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19 pages, 9597 KiB  
Article
Genomic Analysis Reveals the Fast-Growing Trait and Improvement Potential for Stress Resistance in the Elite Poplar Variety Populus × euramericana ‘Bofeng 3’
by Shanchen Zhong, Weixi Zhang, Changjun Ding, Zhengsai Yuan, Le Shen, Bingyu Zhang, Yanguang Chu and Xiaohua Su
Int. J. Mol. Sci. 2025, 26(12), 5526; https://doi.org/10.3390/ijms26125526 - 9 Jun 2025
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Abstract
Enhancing stress tolerance represents a critical objective in the genetic improvement of poplar trees. Populus × euramericana ‘Bofeng 3’ is a nationally certified elite poplar variety that was approved as a premium pulpwood variety for the southern area of Northeastern China. This variety [...] Read more.
Enhancing stress tolerance represents a critical objective in the genetic improvement of poplar trees. Populus × euramericana ‘Bofeng 3’ is a nationally certified elite poplar variety that was approved as a premium pulpwood variety for the southern area of Northeastern China. This variety grows quickly, has good yield, and resists frost; however, its weaker drought and salt tolerance limits its broader use in diverse environments. The aim of this study is to understand the genetic basis of the fast growth and stress-adaptation traits of this variety and to provide support for future molecular breeding efforts. We present a chromosome-scale genome assembly of Populus × euramericana ‘Bofeng 3’, totaling 445.53 Mb, of which with 90.39% is anchored to 19 chromosomes, containing 33,309 protein-coding genes and 45.36% repetitive elements. Comparative genomics showed that ‘Bofeng 3’ has expanded gene families related to photosynthesis and metabolism, and contracted families involved in stress responses, distinguishing it from other Populus species. Under drought (9137 leaf, 9403 root differentially expressed genes (DEGs)) and salt stress (2840 leaf, 3807 root DEGs), trend analysis revealed specific expression patterns. Several unique and expanded genes, including those for photosynthetic proteins, peroxidases, gamma-aminobutyric acid metabolism, and disease resistance, showed stress-responsive trends. Weighted gene co-expression network analysis identified five modules (three positive, two negative) that significantly correlated with photosynthetic traits, highlighting key candidates such as bZIP transcription factors and auxin/indole acetic acid genes. This study determined the genetic basis underlying the rapid growth traits of Populus × euramericana ‘Bofeng 3’, while providing genomic resources to establish a robust foundation for future gene editing and molecular breeding studies, including critical candidate genetic resources for developing superior drought- and salt-tolerant poplar varieties via targeted genome editing technologies. Full article
(This article belongs to the Section Molecular Plant Sciences)
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