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19 pages, 3740 KB  
Article
Spatiotemporal Characteristics and Physical–Ecological Coupling Mechanisms of Spring Phytoplankton Blooms in the Bohai Sea
by Xin Song, Junru Guo, Yu Cai, Jun Song and Yanzhao Fu
J. Mar. Sci. Eng. 2026, 14(6), 540; https://doi.org/10.3390/jmse14060540 - 13 Mar 2026
Viewed by 328
Abstract
Spring phytoplankton bloom mechanisms in the Bohai Sea show clear spatial differences, but the physical–biological coupling in the ice-covered Liaodong Bay (LDB) remains poorly understood. Utilizing satellite observations and high-resolution reanalysis data from 2009 to 2023, this study explores the drivers of spring [...] Read more.
Spring phytoplankton bloom mechanisms in the Bohai Sea show clear spatial differences, but the physical–biological coupling in the ice-covered Liaodong Bay (LDB) remains poorly understood. Utilizing satellite observations and high-resolution reanalysis data from 2009 to 2023, this study explores the drivers of spring blooms through generalized additive models (GAMs) and the Equation of State of Seawater (EOS). The results reveal pronounced regional heterogeneity. In the southern Bohai Sea, bloom dynamics are co-regulated by a complex combination of nutrient availability and localized physical mixing. In contrast, blooms in LDB are predominantly driven by the shoaling of the mixed layer depth (MLD), a physical state intrinsically linked to winter sea-ice melt. Linear decomposition of water density via EOS quantitatively demonstrates that spring stratification in LDB is salinity-dominated (contributing ~60.7%), rather than thermally driven. The rapid influx of low-salinity meltwater forms a strong halocline that suppresses vertical mixing and physically compresses the MLD into the euphotic zone. Consistent with Sverdrup’s Critical Depth Theory, this inferred physical pathway effectively alleviates light limitation and acts as the primary trigger for the early bloom peak timing. This complete melting–freshening–stratification–light coupling chain provides a novel physical perspective on how mid-latitude marginal sea ecosystems respond to climate change, distinct from canonical polar light-limitation models. Full article
(This article belongs to the Section Marine Ecology)
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23 pages, 7796 KB  
Article
Study on Single-Point Mooring Cables for Stereoscopic Environmental Monitoring in the Natural Gas Hydrate Area of the South China Sea
by Yifei Dong, Shuangling Dai, Qianyong Liang, Jiawang Chen, Haojie Si, Binbin Guo, Andi Xu, Dongqing Ma, Zhigang Wang, Danyi Su, Xuemin Wu, Yan Sheng, Zhifeng Zhang, Feng Zhang and Yuan Lin
J. Mar. Sci. Eng. 2026, 14(4), 348; https://doi.org/10.3390/jmse14040348 - 11 Feb 2026
Viewed by 442
Abstract
Safe exploitation of the marine natural gas hydrate (NGH) resource is essential to meet the demand of the future energy requirement. To enable real-time monitoring of methane leakage during the production test of NGH, an ocean stereoscopic monitoring system based on underwater single-point [...] Read more.
Safe exploitation of the marine natural gas hydrate (NGH) resource is essential to meet the demand of the future energy requirement. To enable real-time monitoring of methane leakage during the production test of NGH, an ocean stereoscopic monitoring system based on underwater single-point mooring structure is developed, which supports in situ monitoring of marine environment at the sea-air interface, the euphotic zone, and the seabed boundary layer. Numerical simulations were conducted to evaluate the effect of mooring configuration, cable lengths, and buoyancy settings on the mooring stability of the system against the current and waves. Based on the simulation result, an optimized segmented inverse-catenary mooring configuration is developed to achieve a balance between the performance and cost. The designed submersible relay buoy isolates the upper dynamic S-shaped cable from the lower static straight electro-optical-mechanical (EOM) cable, thereby improving system stability. The monitoring system based on the optimized mooring structure is successfully deployed at the NGH zone in the northern South China Sea at the water depth of 1330 m confirming its working stability in harsh sea conditions. Full article
(This article belongs to the Section Ocean Engineering)
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16 pages, 2985 KB  
Review
Aspiring Sustainable Lighting in Urban Marine Areas: A Review of Key Factors for a Wildlife-Friendly Lighting Design, with a Focus on Daytime and Nighttime
by Luís Carlos Martins Mestrinho de Medeiros Raposo
Urban Sci. 2026, 10(1), 16; https://doi.org/10.3390/urbansci10010016 - 1 Jan 2026
Viewed by 631
Abstract
From an ecological perspective, sustainable lighting in urban marine areas requires striking a balance between meeting human needs and protecting marine ecosystems from the harmful effects of disrupting natural light regimes. While managing artificial lighting is crucial, we argue that preventing obstructions to [...] Read more.
From an ecological perspective, sustainable lighting in urban marine areas requires striking a balance between meeting human needs and protecting marine ecosystems from the harmful effects of disrupting natural light regimes. While managing artificial lighting is crucial, we argue that preventing obstructions to light penetration into the water is as important, as many marine organisms depend on the euphotic zone. This study intends to review the key factors for the implementation of wildlife-friendly lighting design in the urban marine environment, as the subject is explored in ecological studies but scarcely discussed in urban studies. An integrative literature review and cases are employed to synthesise evidence about changes to the light regime in urban marine areas from four perspectives: light reach, intensity, spectrum, and duration. The cases present measures implemented to benefit marine species affected by alterations to the light regime following urbanisation in a way that they could still thrive in a modified built environment. In discussion, it is acknowledged that achieving sustainable lighting in urban marine areas is a multifaceted challenge involving concurrent influencing factors, including a shared agency between humans and non-humans, which may require comprehensive lighting designs that are tailored to specific goals and target species. Full article
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23 pages, 9600 KB  
Article
Vertical Monitoring of Chlorophyll-a and Phycocyanin Concentrations High-Latitude Inland Lakes Using Sentinel-3 OLCI
by Jinpeng Shen, Zhidan Wen, Kaishan Song, Hui Tao, Shizhuo Liu, Zhaojiang Yan, Chong Fang and Lili Lyu
Remote Sens. 2026, 18(1), 139; https://doi.org/10.3390/rs18010139 - 31 Dec 2025
Cited by 1 | Viewed by 705
Abstract
Massive phytoplankton blooms threaten lake ecosystems, causing significant ecological and socio-economic damage. While remote sensing is vital for monitoring, the vertical stratification of algae influences light propagation and distorts remote sensing reflectance signals. This effect is particularly understudied in high-latitude lakes, leaving a [...] Read more.
Massive phytoplankton blooms threaten lake ecosystems, causing significant ecological and socio-economic damage. While remote sensing is vital for monitoring, the vertical stratification of algae influences light propagation and distorts remote sensing reflectance signals. This effect is particularly understudied in high-latitude lakes, leaving a gap in understanding phytoplankton biomass patterns. To address this, our study investigated three high-latitude water bodies: Lake Hulun, Fengman Reservoir, and Lake Khanka. We collected water samples from three depths based on total and euphotic zone depth and developed layer-specific inversion models for chlorophyll-a (Chal) and phycocyanin (PC) using a random forest algorithm. These models demonstrated strong performance and were applied to Sentinel-3 OLCI imagery from 2016–2024. Our results show that Chla generally decreases exponentially with depth, whereas PC exhibits a Gaussian-like vertical distribution with a pronounced subsurface maximum at approximately 1 m. In addition, a significant positive correlation between Chla and PC was observed in surface waters. In Lake Khanka, the northern basin exhibited a significant interannual increase in phytoplankton biomass. At 3 m, PC correlated negatively with turbidity and responded strongly to cyanobacterial blooms, while organic suspended matter correlated positively with Chla. This work establishes a robust framework for multilayer water quality monitoring in high-latitude lakes, providing critical insights for eutrophication management and cyanobacterial bloom early warning. Full article
(This article belongs to the Special Issue Intelligent Remote Sensing for Wetland Mapping and Monitoring)
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19 pages, 3725 KB  
Article
Satellite Retrieval of Oceanic Particulate Organic Nitrogen Vertical Profiles
by Yu Zhang, Ping Zhu, Guanglang Xu, Cong Liu, Yongquan Wang, Menghui Wang and Huizeng Liu
Remote Sens. 2025, 17(24), 3968; https://doi.org/10.3390/rs17243968 - 8 Dec 2025
Viewed by 512
Abstract
Accurate satellite retrieval of oceanic particulate organic nitrogen (PON) vertical profile is essential for understanding global biogeochemical processes; however, no dedicated retrieval models currently exist. This study developed a novel PON profile retrieval model using the eXtreme Gradient Boosting (XGBoost) algorithm, based on [...] Read more.
Accurate satellite retrieval of oceanic particulate organic nitrogen (PON) vertical profile is essential for understanding global biogeochemical processes; however, no dedicated retrieval models currently exist. This study developed a novel PON profile retrieval model using the eXtreme Gradient Boosting (XGBoost) algorithm, based on a comprehensive global dataset that includes in situ PON measurements, MODIS-Aqua bio-optical data, and 3D reanalysis physical data. The XGBoost-retrieved PON profiles were compared with those derived from Copernicus particulate backscattering coefficient (bbp) profiles and were further used to estimate the euphotic-zone PON stocks through an optimally performing regression model. The results showed that the proposed model significantly outperformed models constructed without physical inputs, achieving R2 of 0.83, RMSE of 1.49 mg m3 and MAPE of 18.07%. Compared to the bbp-based profiles, the XGBoost-retrieved profiles exhibited higher accuracy. The model also provided reliable estimates of euphotic-zone PON stocks, with R2 of 0.76, RMSE of 200.31 mg m2 and MAPE of 15.09%. These findings demonstrate the potential of the proposed retrieval model for investigating oceanic nitrogen dynamics and biogeochemical cycles. Full article
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28 pages, 3903 KB  
Article
Evaluation of the Abiotic Components of the Nutrient Balance in the Barents Sea and Its Influence on Primary Production
by Alexey Namyatov, Pavel Makarevich, Ivan Alexandrovich Pastukhov and Veronika V. Vodopyanova
Water 2025, 17(23), 3358; https://doi.org/10.3390/w17233358 - 24 Nov 2025
Viewed by 618
Abstract
This study builds on our prior research to refine the methodology for estimating marine primary production (PP) in the Barents Sea. It examines how abiotic factors—vertical mixing and horizontal advection—affect nutrient concentrations in the euphotic zone and subsequently influence PP. The analysis utilized [...] Read more.
This study builds on our prior research to refine the methodology for estimating marine primary production (PP) in the Barents Sea. It examines how abiotic factors—vertical mixing and horizontal advection—affect nutrient concentrations in the euphotic zone and subsequently influence PP. The analysis utilized salinity and nutrient data from the World Ocean Atlas (NCEI WOA). The δ18O parameter, used in conjunction with salinity, helped quantify the proportion of water from different origins. The results revealed a spatial heterogeneity in nutrient transport, identifying zones of both synchronous and asynchronous nutrient flows. Asynchronous flow was characterized by the removal of phosphorus and silicon alongside the influx of nitrogen. A significant correlation between these physical fluxes and PP was observed in the eastern part of the sea, where asynchronous flow prevails. Our calculations indicate that nitrogen influx increases PP by an average of 38% as high as 68%. The simultaneous fluxes of silicon and phosphorus showed no statistically significant effect. The study concludes that nitrogen is the primary limiting factor for PP in this region. Full article
(This article belongs to the Section Oceans and Coastal Zones)
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24 pages, 2276 KB  
Article
Key Environmental Drivers of Summer Phytoplankton Size Class Variability and Decadal Trends in the Northern East China Sea
by Jung-Woo Park, Huitae Joo, Hyo Keun Jang, Jae Joong Kang, Joon-Soo Lee and Changsin Kim
Remote Sens. 2025, 17(11), 1954; https://doi.org/10.3390/rs17111954 - 5 Jun 2025
Cited by 1 | Viewed by 1839
Abstract
Phytoplankton size classes (PSC), which categorize phytoplankton into pico- (<2 µm), nano- (2–20 µm), and microphytoplankton (>20 µm), have been widely used to describe functional group responses to environmental variability. Distribution of PSCs heavily influences marine ecosystems and biogeochemical processes. Despite the importance [...] Read more.
Phytoplankton size classes (PSC), which categorize phytoplankton into pico- (<2 µm), nano- (2–20 µm), and microphytoplankton (>20 µm), have been widely used to describe functional group responses to environmental variability. Distribution of PSCs heavily influences marine ecosystems and biogeochemical processes. Despite the importance of PSC distributions, especially in the face of climate change, long-term studies on PSC variability and its driving factors are lacking. This study aimed to identify the key environmental drivers affecting summer PSC variability in the northern East China Sea (NECS) by analyzing 27 years (1998–2024) of satellite-derived data. Statistical analyses using random forest and multiple linear regression models revealed that euphotic depth (Zeu) and suspended particulate matter (SPM) were the primary factors influencing PSC variation; deeper Zeu values favored smaller picophytoplankton, whereas higher SPM concentrations supported larger PSCs. Long-term trend analysis showed a clear shift toward increasing picophytoplankton contributions (+2.4% per year), with corresponding declines in nano- and microphytoplankton levels (2.2% and 0.4% annually, respectively). These long-term changes are hypothesized to result from a persistent decline in SPM concentrations, which modulate light attenuation and nutrient dynamics in the euphotic zone. Marine heat waves intensify these shifts by promoting picophytoplankton dominance through enhanced stratification and reduced nutrient availability. These findings underscore the need for continuous monitoring to inform ecosystem management and predict the impacts of climate change in the NECS. Full article
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10 pages, 1419 KB  
Article
HABS-BLOCKS© Inhibited Microcystis and Planktothrix and Reduced Microcystin Concentrations in a Lake Water Mesocosm Study
by Cameron Gastaldo and Stephen Vesper
Microorganisms 2025, 13(5), 1074; https://doi.org/10.3390/microorganisms13051074 - 5 May 2025
Cited by 2 | Viewed by 1036
Abstract
Toxins produced by cyanobacteria are a threat to drinking water and the aquatic ecosystem. Previously, we reported that adding glucose to lake water could reduce cyanobacterial populations. To target the glucose to the euphotic zone, floating HABS-BLOCKS© infused with glucose were created. On [...] Read more.
Toxins produced by cyanobacteria are a threat to drinking water and the aquatic ecosystem. Previously, we reported that adding glucose to lake water could reduce cyanobacterial populations. To target the glucose to the euphotic zone, floating HABS-BLOCKS© infused with glucose were created. On 12 June 2024, 24 L of bloom lake water was collected, and then 6 L was aliquoted into each of four 7 L mesocosms. Two HABS-BLOCKS© were added to each of two replicate treatment mesocosms, while two “Dummy” HABS-BLOCKS© (same but without glucose) were added to each of two control mesocosms. Cyanobacteria cell densities and microcystin concentrations were measured weekly. Total nitrogen and phosphorus and other water quality variables including dissolved oxygen, specific conductivity, and turbidity were measured at the end of the six-week experiment. Initially, Microcystis was measured at 2.4 × 103 cells/mL and Planktothrix at 5.0 × 102 cells/mL. After 6 weeks, both the Microcystis and Planktothrix population were significantly lower in the treated mesocosms compared to the controls. The initial microcystin concentration averaged 10.4 µg/L. By the third week of the experiment, the microcystin concentration was about 70% lower in the treated mesocosms. Total nitrogen was also lower in the HABS-BLOCKS©-treated mesocosm, but the other water quality measures were similar between the control and treated mesocosms. HABS-BLOCKS© appeared to reduce cyanobacterial cell densities, lower toxin concentrations, and lower total nitrogen while not having negative impacts on other water quality measures. Although much remains to be learned, this technology may someday be useful in suppressing HABS. Full article
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26 pages, 4299 KB  
Article
Illuminating the Impact of a Floating Photovoltaic System on a Shallow Drinking Water Reservoir: The Emergence of Benthic Cyanobacteria
by Giovanni Sandrini, Arco Wagenvoort, Roland van Asperen, Bas Hofs, Dirk Mathijssen and Albert van der Wal
Water 2025, 17(8), 1178; https://doi.org/10.3390/w17081178 - 15 Apr 2025
Cited by 5 | Viewed by 3340
Abstract
Floating photovoltaic (FPV) systems can play an important role in energy transition. Yet, so far, not much is known about the effects of FPV systems on water quality and ecology. A sun-tracking FPV system (24% coverage) was installed on a shallow drinking water [...] Read more.
Floating photovoltaic (FPV) systems can play an important role in energy transition. Yet, so far, not much is known about the effects of FPV systems on water quality and ecology. A sun-tracking FPV system (24% coverage) was installed on a shallow drinking water reservoir. We observed for the first time that benthic cyanobacteria (blue-green algae), which can deteriorate water quality, developed massively under the FPV system, while macrophytes and benthic algae, such as Chara (stonewort), mostly disappeared. Calculations of light availability explain this shift. The natural mixing of the water column was hardly affected, and the average temperature of the reservoir was not altered significantly. Biofouling of the water-submerged part of the FPV system consisted mostly of a massive attachment of Dreissena mussels, which affected water quality. Water bird numbers and concentrations of faecal bacteria were similar after the installation of the FPV system. Especially in shallow, transparent water bodies, there is a significant risk of FPV systems promoting the growth of undesirable benthic cyanobacteria. Overall, these new insights can aid water managers and governmental institutions in assessing the risks of FPV systems on water quality and the ecology of inland waters. Full article
(This article belongs to the Section Water Quality and Contamination)
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15 pages, 6650 KB  
Article
Submesoscale Ageostrophic Processes in the Kuroshio and Their Impact on Phytoplankton Community Distribution
by Yuxuan Wang, Zheyue Shen, Jinjun Rao and Shuwen Zhang
J. Mar. Sci. Eng. 2024, 12(12), 2334; https://doi.org/10.3390/jmse12122334 - 19 Dec 2024
Viewed by 1335
Abstract
This study focuses on typical regions of strong ageostrophic processes in the Kuroshio using high-resolution remote sensing satellite reanalysis data and Argo float data. By analyzing the relationship between the Rossby number and chlorophyll concentration from June to August in the summer of [...] Read more.
This study focuses on typical regions of strong ageostrophic processes in the Kuroshio using high-resolution remote sensing satellite reanalysis data and Argo float data. By analyzing the relationship between the Rossby number and chlorophyll concentration from June to August in the summer of 2020, the spatial characteristics of ageostrophic processes and their impact on the phytoplankton community distribution are explored. The results indicate that ageostrophic processes, driven by coastal topography, are stably generated in the regions of the Bashi Channel, northeastern Taiwan waters, southwestern Kyushu Island, and southern Shikoku Island. Furthermore, the intensity of these ageostrophic processes shows an overall positive correlation with chlorophyll concentration. The local mixing and subfront circulations induced by ageostrophic processes pump deep nutrients into the euphotic zone, supporting the growth and reproduction of phytoplankton, which leads to the formation of significant chlorophyll hotspots in regions controlled by ageostrophic processes. Full article
(This article belongs to the Special Issue Latest Advances in Physical Oceanography—2nd Edition)
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20 pages, 3134 KB  
Article
Evaluating MULTIOBS Chlorophyll-a with Ground-Truth Observations in the Eastern Mediterranean Sea
by Eleni Livanou, Raphaëlle Sauzède, Stella Psarra, Manolis Mandalakis, Giorgio Dall’Olmo, Robert J. W. Brewin and Dionysios E. Raitsos
Remote Sens. 2024, 16(24), 4705; https://doi.org/10.3390/rs16244705 - 17 Dec 2024
Cited by 3 | Viewed by 2670
Abstract
Satellite-derived observations of ocean colour provide continuous data on chlorophyll-a concentration (Chl-a) at global scales but are limited to the ocean’s surface. So far, biogeochemical models have been the only means of generating continuous vertically resolved Chl-a profiles on a regular grid. MULTIOBS [...] Read more.
Satellite-derived observations of ocean colour provide continuous data on chlorophyll-a concentration (Chl-a) at global scales but are limited to the ocean’s surface. So far, biogeochemical models have been the only means of generating continuous vertically resolved Chl-a profiles on a regular grid. MULTIOBS is a multi-observations oceanographic dataset that provides depth-resolved biological data based on merged satellite- and Argo-derived in situ hydrological data. This product is distributed by the European Union’s Copernicus Marine Service and offers global multiyear, gridded Chl-a profiles within the ocean’s productive zone at a weekly temporal resolution. MULTIOBS addresses the scarcity of observation-based vertically resolved Chl-a datasets, particularly in less sampled regions like the Eastern Mediterranean Sea (EMS). Here, we conduct an independent evaluation of the MULTIOBS dataset in the oligotrophic waters of the EMS using in situ Chl-a profiles. Our analysis shows that this product accurately and precisely retrieves Chl-a across depths, with a slight 1% overestimation and an observed 1.5-fold average deviation between in situ data and MULTIOBS estimates. The deep chlorophyll maximum (DCM) is adequately estimated by MULTIOBS both in terms of positioning (root mean square error, RMSE = 13 m) and in terms of Chl-a (RMSE = 0.09 mg m−3). The product accurately reproduces the seasonal variability of Chl-a and it performs reasonably well in reflecting its interannual variability across various depths within the productive layer (0–120 m) of the EMS. We conclude that MULTIOBS is a valuable dataset providing vertically resolved Chl-a data, enabling a holistic understanding of euphotic zone-integrated Chl-a with an unprecedented spatiotemporal resolution spanning 25 years, which is essential for elucidating long-term trends and variability in oceanic primary productivity. Full article
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18 pages, 5768 KB  
Article
Wind Vorticity and Upwelling along the Coast of South Africa
by Mark R. Jury
Coasts 2024, 4(3), 619-637; https://doi.org/10.3390/coasts4030032 - 13 Sep 2024
Cited by 1 | Viewed by 3090
Abstract
Coastal upwelling that cools sea temperatures and nutrifies the euphotic layer is the focus of this research, motivated by how these processes benefit the marine ecosystem. Here, atmosphere–ocean reanalysis fields and satellite radiance data are employed to link South African coastal upwelling with [...] Read more.
Coastal upwelling that cools sea temperatures and nutrifies the euphotic layer is the focus of this research, motivated by how these processes benefit the marine ecosystem. Here, atmosphere–ocean reanalysis fields and satellite radiance data are employed to link South African coastal upwelling with nearshore winds and currents in the 2000–2021 period. Temporal behavior is quantified in three regimes—Benguela, transition, and Agulhas—to distinguish the influence of offshore transport, vertical pumping, and dynamic uplift. These three mechanisms of coastal upwelling are compared to reveal a leading role for cyclonic wind vorticity. Daily time series at west, south, and east coast sites exhibit pulsing of upwelling-favorable winds during summer. Over the western shelf, horizontal transport and vertical motion are in phase. The south and east shelf experience greater cyclonic wind vorticity in late winter, due to land breezes under the Mascarene high. Ekman transport and pumping are out of phase there, but dynamic uplift is sustained by cyclonic shear from the shelf-edge Agulhas current. Temporal analysis of longshore wind stress and cyclonic vorticity determined that vertical motion of ~5 m/day is pulsed at 4- to 11-day intervals due to passing marine high/coastal low-pressure cells. Height sections reveal that 15 m/s low-level wind jets diminish rapidly inshore due to topographic shearing by South Africa’s convex mountainous coastline. Mean maps of potential wind vorticity show a concentration around capes and at nighttime, due to land breezes. Air–land–sea coupling and frequent coastal lows leave a cyclonic footprint on the coast of South Africa that benefits marine productivity, especially during dry spells with a strengthened subtropical atmospheric ridge. This work has, for the first time, revealed that South Africa is uniquely endowed with three overlapping mechanisms that sustain upwelling along the entire coastline. Amongst those, cyclonic potential vorticity prevails due to the frequent passage of coastal lows that initiate downslope airflows. No other coastal upwelling zone exhibits such a persistent feature. Full article
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16 pages, 5328 KB  
Article
Model-Based Analysis of the Oxygen Budget in the Black Sea Water Column
by Matvey Novikov, Svetlana Pakhomova, Anfisa Berezina and Evgeniy Yakushev
Water 2024, 16(17), 2380; https://doi.org/10.3390/w16172380 - 24 Aug 2024
Cited by 4 | Viewed by 2196
Abstract
Climate change and anthropogenic impacts drastically affect the biogeochemical regime of the Black Sea, which contains the largest volume of sulphidic water in the world. The Sea’s oxygen inventory depends on vertical mixing that transports dissolved oxygen (DO) from the upper euphotic layer [...] Read more.
Climate change and anthropogenic impacts drastically affect the biogeochemical regime of the Black Sea, which contains the largest volume of sulphidic water in the world. The Sea’s oxygen inventory depends on vertical mixing that transports dissolved oxygen (DO) from the upper euphotic layer to deeper layers and on dissolved oxygen consumption for the oxidation of organic matter (OM) and reduced species of S, Fe, and Mn. Here we use a vertical one-dimensional transport model, 2DBP, forced by Copernicus data, that was coupled with the FABM-family N-P-Si-C-O-S-Mn-Fe Bottom RedOx Model BROM. The research objective of this study was to analyze the oxygen budget in the upper 350 m of the Sea and demonstrate the role of the parameterization of the acceleration of the sinking of particles covered by precipitated Mn(IV). The analysis of the oxygen budget revealed distinct patterns in oxygen consumption within different depths. In the oxic zone, the primary sink for DO is the mineralization of organic matter, whereas in the suboxic zone, dissolved Mn(II) oxidation becomes the predominant sink. The produced Mn(IV) sinks down and reacts with hydrogen sulphide several meters below, making possible the existence of the suboxic layer without detectable concentrations of DO and H2S. Full article
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10 pages, 14641 KB  
Article
Computer Vision Techniques for Morphological Analysis and Identification of Two Pseudo-nitzschia Species
by Martin Marzidovšek, Patricija Mozetič, Janja Francé and Vid Podpečan
Water 2024, 16(15), 2160; https://doi.org/10.3390/w16152160 - 31 Jul 2024
Cited by 1 | Viewed by 1986
Abstract
The diversity of phytoplankton influences the structure of and processes that occur in marine ecosystems, with size and other morphological traits being crucial for nutrient uptake and retention in the euphotic zone. Our research introduces a machine learning method that can facilitate the [...] Read more.
The diversity of phytoplankton influences the structure of and processes that occur in marine ecosystems, with size and other morphological traits being crucial for nutrient uptake and retention in the euphotic zone. Our research introduces a machine learning method that can facilitate the analysis of phytoplankton functional traits from image data. We use computer vision to identify and quantify phytoplankton species and estimate size-related traits based on cell morphology. The study uses transfer learning, where generic, pre-trained YOLOv8 computer vision models are fine-tuned with microscope image data from the Adriatic Sea. The study shows that, for this task, it is possible to effectively fine-tune models trained on out-of-domain images and that this is possible with a small training dataset. The results show high accuracy in detecting and segmenting phytoplankton cells from the microscopic images of the two selected phytoplankton taxa. For detection, the model achieves AP scores of 88.1% for Pseudo-nitzschia cf. delicatissima and 90.9% for Pseudo-nitzschia cf. calliantha, while for segmentation, the scores are 88.4% for Pseudo-nitzschia cf. delicatissima and 91.2% for Pseudo-nitzschia cf. calliantha. Compared to manual image analysis, the developed automatic method significantly increases the number of samples that can be processed. Full article
(This article belongs to the Section Biodiversity and Functionality of Aquatic Ecosystems)
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15 pages, 2114 KB  
Article
Oxygen Concentration and Its Implications for Microbial Structure and Metabolism: A Case Study in a Deep Tropical Reservoir
by Alessandro Del’Duca, Amanda Meirelles de Sá Janiques, Raiza dos Santos Azevedo, Fábio Roland and Dionéia Evangelista Cesar
Diversity 2024, 16(8), 444; https://doi.org/10.3390/d16080444 - 26 Jul 2024
Cited by 2 | Viewed by 3288
Abstract
The vertical stratification of oxygen concentration in deep reservoirs impacts nutrient cycling and ecosystem biodiversity. The Serra da Mesa reservoir, the largest in Brazil, was studied to evaluate the structure and production of the prokaryote community at five depths. Using 3H leucine [...] Read more.
The vertical stratification of oxygen concentration in deep reservoirs impacts nutrient cycling and ecosystem biodiversity. The Serra da Mesa reservoir, the largest in Brazil, was studied to evaluate the structure and production of the prokaryote community at five depths. Using 3H leucine incorporation and fluorescent in situ hybridization (FISH), the study focused on different depths near the dam, particularly within the euphotic zone. The water column was characterized into oxic, transitional, and hypoxic layers based on dissolved oxygen concentration. The highest densities and biomasses of prokaryotes were found at the euphotic zone’s depth limit, where bacterial production was low, suggesting inactive or slow-growing bacteria. Cell size differences and filamentous bacteria presence near the surface were observed, likely due to varying predation pressures. Prokaryote community composition differed across depths. At the subsurface level, with high dissolved organic carbon, alphaproteobacteria, betaproteobacteria, and Cytophaga–Flavobacter had similar densities, but the lowest bacterial biomass was recorded. The highest dissolved oxygen concentration depth had the lowest bacterial density, dominated by alphaproteobacteria and gammaproteobacteria. The study revealed that prokaryotic community structure and production vary with depth, indicating that microbial participation in layer dynamics is differentiated, with variations in abundance and distribution linked to oxygen concentrations. Full article
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