Search Results (81)

We present a miniaturized, inexpensive, and user-friendly microfluidic platform to support biological applications. The system integrates a mini-incubator providing controlled environmental conditions and housing a microfluidic device for long-term cell culture experiments. The incubator is designed to be compatible with standard inverted optical microscopes and Raman spectrometers, allowing for the non-invasive imaging and spectroscopic analysis of cell cultures in vitro. The microfluidic device, which reproduces a dynamic environment, was optimized to sustain a passive, gravity-driven flow of medium, eliminating the need for an external pumping system and reducing mechanical stress on the cells. The platform was tested using Raman analysis and adherent tumoral cells to assess proliferation prior and subsequent to hydrogen peroxide treatment for oxidative stress induction. The results demonstrated a successful adhesion of cells onto the substrate and their proliferation. Furthermore, the platform is suitable for carrying out optical monitoring of cultures and Raman analysis. In fact, it was possible to discriminate spectra deriving from control and hydrogen peroxide-treated cells in terms of DNA backbone and cellular membrane modification effects provoked by reactive oxygen species (ROS) activity. The 800–1100 cm⁻¹ band highlights the destructive effects of ROS on the DNA backbone’s structure, as its rupture modifies its vibration; moreover, unpaired nucleotides are increased in treated sample, as shown in the 1154–1185 cm⁻¹ band. Protein synthesis deterioration, led by DNA structure damage, is highlighted in the 1257–1341 cm⁻¹, 1440–1450 cm⁻¹, and 1640–1670 cm⁻¹ bands. Furthermore, membrane damage is emphasized in changes in the 1270, 1301, and 1738 cm⁻¹ frequencies, as phospholipid synthesis is accelerated in an attempt to compensate for the membrane damage brought about by the ROS attack. This study highlights the potential use of this platform as an alternative to conventional culturing and analysis procedures, considering that cell culturing, optical imaging, and Raman spectroscopy can be performed simultaneously on living cells with minimal cellular stress and without the need for labeling or fixation. Full article

Background: Heart failure in pediatric patients remains a major cause of morbidity and mortality, often associated with congenital heart defects and cardiomyopathies. Mechanical circulatory support (MCS) devices have emerged as critical therapeutic options, particularly as bridges to transplantation or recovery. The complexity of their use in children necessitates highly specialized solutions. This study aimed to evaluate the quality and performance of selected connection technologies between prosthetic vascular grafts and the outflow cannula of the Religa Heart PED^® pediatric pulsatile pump, with a focus on tightness, surface smoothness, and structural integrity. Methods: Mechanical testing was conducted on various connection types, including static tensile strength and long-term durability under pulsatile flow conditions with biological fluid analogs. Macro and microscopic evaluations assessed the surface quality and potential thrombogenic risks, biological testing encompassed permeability analysis in static and dynamic settings, and hemocompatibility was determined by acute thrombogenicity. Additionally, in vivo observations in a large animal model were used for final qualitative validation. Results: All connection types demonstrated sufficient mechanical strength, with no structural degradation or leakage observed in any samples following long-term testing. Thrombus formation was absent in adhesive connections with Dacron and polytetrafluoroethylene (PTFE) grafts but was observed in the mechanical connection with the PTFE prosthesis. In addition, in vivo studies confirmed the tightness, hemocompatibility, and mechanical stability of the adhesive connection with the Dacron prosthesis. Conclusions: The adhesive connection between the outflow cannula and a Dacron prosthesis demonstrated superior mechanical and biological performance, including resistance to thrombogenesis and hemolysis, as well as stable integration under in vivo conditions. This solution shows high potential for safe application in the Religa Heart PED^® system. Full article

Increasingly severe ocean acidification (OA) disrupts the balance of marine ecosystems. Seawater pH is a key indicator of OA but remains challenging to characterize due to sparse and limited in situ observations. In this study, we propose a spatiotemporal inversion method for surface pH based on interpretable machine learning. By applying carbonate system calculations, we construct an expanded pH observational dataset and obtain spatiotemporal distributions of pH and its influencing factors across the Pacific Ocean from 2003 to 2021. The interpretability analysis reveals that physical, biological, and optical factors contribute 53.9%, 23.9%, and 22.2%, respectively, to pH variability. Sea-surface temperature is the dominant driver, contributing 15.9% of all factors by regulating CO₂ solubility and biological activity. Particulate inorganic carbon (PIC) and particulate organic carbon (POC) show relative contributions of 12.6% and 9.4%, respectively, quantitatively reflecting the important roles of biogenic calcification and the biological carbon pump. Furthermore, the analysis focusing on the Niño 3.4 region reveals a potential pathway through which the ENSO disturbances may affect pH by influencing PIC and POC. Therefore, this study provides a data-driven approach to gain deeper insights into the spatiotemporal patterns of pH and its influencing factors. Full article

Background/Objectives: Antibiotic resistance or antimicrobial resistance (AMR) in livestock is a growing global concern that threatens both human and animal health. The overuse and misuse of antibiotics in livestock production have led to an increased propensity for the development of AMR bacterial strains in animals, which can be spread to humans through the consumption of contaminated animal products, direct contact, or environmental exposure. This review aims to summarize the development and transmission of AMR in livestock, explore its underlying mechanisms and impact on human and animal health, and discuss current practices and potential strategies for mitigation and prevention. Methods: For this narrative review, we searched articles on PubMed and Google Scholar using the terms antibiotic resistance, livestock, and environment, alone or in combination. Results: The history of antibiotic use in livestock and its link to increased AMR, along with the involved mechanisms, including the enzymatic breakdown of antibiotics, alterations in bacterial targets, horizontal gene transfer, and efflux pumps, are important. Antibiotics in livestock are used for growth promotion, disease prevention and control, and metaphylactic use. The role of livestock and the environment as reservoirs for resistant pathogens, their impact on human health, chronic infections, allergic reactions, toxicity, and the development of untreatable diseases is important to understand AMR. Conclusions: Given the widespread use of antibiotics and the potential consequences of AMR, collaborative global efforts, increased public awareness, coordinated regulations, and advancements in biological technology are required to mitigate the threat AMR poses to human and animal health. Regulatory solutions and the development of new therapeutic alternatives like antimicrobial peptides and bacteriophage therapy, and preventive measures such as DNA and mRNA vaccines, are future perspectives. Full article

The transition toward sustainable and decentralized energy solutions necessitates the development of innovative bioelectronic systems capable of harvesting and converting renewable energy. Here, we present a novel photo-bioelectrochemical fuel cell architecture based on a biohybrid anode integrating laser-induced graphene (LIG), poly(3,4-ethylenedioxythiophene) (PEDOT), and isolated thylakoid membranes. LIG provided a porous, conductive scaffold, while PEDOT enhanced electrode compatibility, electrical conductivity, and operational stability. Compared to MXene-based systems that involve complex, multi-step synthesis, PEDOT offers a cost-effective and scalable alternative for bioelectrode fabrication. Thylakoid membranes were immobilized onto the PEDOT-modified LIG surface to enable light-driven electron generation. Electrochemical characterization revealed enhanced redox activity following PEDOT modification and stable photocurrent generation under light illumination, achieving a photocurrent density of approximately 18 µA cm⁻². The assembled photo-bioelectrochemical fuel cell employing a gas diffusion platinum cathode demonstrated an open-circuit voltage of 0.57 V and a peak power density of 36 µW cm⁻² in 0.1 M citrate buffer (pH 5.5) under light conditions. Furthermore, the integration of a charge pump circuit successfully boosted the harvested voltage to drive a low-power light-emitting diode, showcasing the practical viability of the system. This work highlights the potential of combining biological photosystems with conductive nanomaterials for the development of self-powered, light-driven bioelectronic devices. Full article

Flavonoids and chalcones, widely recognised for their diverse biological activities, have garnered attention due to their potential therapeutic applications. This review discusses fluorinated flavonoids and chalcones, focusing on their prospective anti-inflammatory, antidiabetic, anticancer, antiosteoporotic, cardioprotective, neuroprotective, hepatoprotective, antimicrobial, and antiparasitic applications. The enhanced biological activities of fluorinated derivatives, particularly the antibacterial, antiviral, and anticancer properties, are attributed to the introduction of fluorine groups, which increase lipophilicity and metabolic stability. Key findings indicate that fluorinated flavonoids and chalcones exhibit synergistic effects with antibiotics, inhibit bacterial efflux pumps, and reveal potent antiviral and anticancer properties. However, challenges such as cytotoxicity and structural optimisation have to be addressed. The synthesis of fluorinated flavonoids and chalcones is discussed, with emphasis on various synthetic methods such as condensation and cyclisation reactions starting from fluorinated precursors, as well as fluorination strategies, including the use of molecular fluorine or fluorinating agents. Fluorinated flavonoids and chalcones represent candidates for therapeutic development and have the potential to overcome drug resistance. However, further studies are necessary to adjust their pharmacological profiles. Full article

Cancer is biologically diverse, highly heterogeneous, and associated with molecular alterations, significantly contributing to mortality worldwide. Currently, cancer patients are subjected to single or combination treatments comprising chemotherapy, surgery, immunotherapy, radiation therapy, and targeted therapy. Chemotherapy remains the first line of treatment in cancer but faces a major obstacle in the form of chemoresistance. This obstacle has resulted in relapses and poor patient survival due to decreased treatment efficacy. Aberrant pre-mRNA alternative splicing can significantly modulate gene expression and function involved in the resistance mechanisms, potentially shaping the intricate landscape of tumour chemoresistance. Thus, novel strategies targeting abnormal pre-mRNA alternative splicing and understanding the molecular mechanisms of chemotherapy resistance could aid in overcoming the chemotherapeutic challenges. This review first highlights drug targets, drug pumps, detoxification mechanisms, DNA damage response, and evasion of apoptosis and cell death as key molecular mechanisms involved in chemotherapy resistance. Furthermore, the review discusses the progress of research on the dysregulation of alternative splicing and molecular targets involved in chemotherapy resistance in major cancer types. Full article

The growing burden of degenerative, cardiovascular, neurodegenerative, and cancerous diseases necessitates innovative approaches to improve our pathophysiological understanding and ability to modulate biological processes. Organic bioelectronics has emerged as a powerful tool in this pursuit, offering a unique ability to interact with biology due to the mixed ionic–electronic conduction and tissue-mimetic mechanical properties of conducting polymers (CPs). These materials enable seamless integration with biological systems across different levels of complexity, from monolayers to complex 3D models, microfluidic chips, and even clinical applications. CPs can be processed into diverse formats, including thin films, hydrogels, 3D scaffolds, and electrospun fibers, allowing the fabrication of advanced bioelectronic devices such as multi-electrode arrays, transistors (EGOFETs, OECTs), ion pumps, and photoactuators. This review examines the integration of CP-based bioelectronics in vivo and in in vitro microphysiological systems, focusing on their ability to monitor key biological events, including electrical activity, metabolic changes, and biomarker concentrations, as well as their potential for electrical, mechanical, and chemical stimulation. We highlight the versatility and biocompatibility of CPs and their role in advancing personalized medicine and regenerative therapies and discuss future directions for organic bioelectronics to bridge the gap between biological systems and electronic technologies. Full article

Diatoms in the Arabian Gulf region could contribute to various biological carbon pumps, playing crucial ecological roles and producing bioactive compounds beneficial to both humans and marine animals. Despite their significance, some diatoms pose risks to human health and the economy; however, research on their roles in Qatar remains limited. This review explores the roles of diatoms in the Arabian Gulf, highlighting their potential for remediating polluted seawater and their applications in pharmacology, biofuel production, and detoxification of chemical waste and hazardous metals. Among the 242 diatom species identified along the coastline of the Gulf and Qatar, several genera represent 50% of the identified species and have demonstrated notable efficiency in phycoremediation and bioactive compounds production. These include antibacterial agents with therapeutic potential, antioxidants to neutralize harmful free radicals, compounds that degrade toxic substances, and agents for remediating heavy metals. Additionally, diatoms contribute to the production of biofuels, nutritional agents, dyes, and extracellular polymeric substances, and some species serve as bioindicators of pollution stress. To fully utilize their potential requires significant efforts and comprehensive research. This review explores the reasons behind the current lack of such initiatives and highlights the importance of conducting targeted studies to address the environmental challenges facing the Arabian Gulf. Full article

Policies aimed at reducing plant protection products (PPPs) are part of the UN’s 2030 Agenda for Sustainable Development. Sustainable management of PPPs is crucial for soil health, biodiversity, and ecosystem services, including food provision. While PPPs can control pests and enhance agricultural yields, they also pose environmental and health risks by contaminating water, soil, and non-target organisms through airborne drift. Investigating innovative and more sustainable distribution methods can support sustainability goals. This study aimed to evaluate the potential impact of the pesticide Spintor^® Fly on non-target soil organisms in olive orchards comparing two spraying methods: a traditional Casotti^® pump mounted on a tractor and an innovative Unmanned Aerial Vehicle (UAV) developed for the project. The study was conducted in 2021 in an organic olive orchard, which was divided into two plots: a Casotti-treated plot (CAS) and a drone-treated plot (DRO). A strip of uncultivated land at the edge of the orchard was used as a (non-treated) control plot (CAP). The impact on native soil microarthropod communities was assessed using the arthropod-based Soil Biological Quality Index (QBS-ar) and Bait Lamina Test (BLT). Soil samples were collected for earthworm avoidance tests and soil chemical–physical analysis. The results obtained with QBS-ar and BLT indicated no significant differences between DRO and CAS, in both sampling periods (pre- and post-treatment). However, DRO generally exhibited slightly better performance than CAS. The avoidance behaviour was confirmed for both CAS and DRO, although it was lower for the latter. Overall, drone aerial spray performed slightly better, suggesting a potentially lower impact on soil communities. Our results provide initial clues for the sustainable use of drones in agriculture with no increased risks for soil health compared to traditional methods. Further long-term studies should be conducted to validate these findings and possibly confirm the long-term benefits of drone applications compared to traditional methods. Full article

V-ATPases are ubiquitous and evolutionarily conserved rotatory proton pumps, which are crucial for maintaining various biological functions. Previous investigations have shown that a V-ATPase is present in the support cells of moth trichoid sensilla and influences their olfactory sensory neuron performance. Generally, V-ATPases are thought to regulate the pH value within the sensillum lymph, and aid K⁺ homeostasis within the sensillum. This, in turn, could influence various mechanisms involved within the support cells, like maintaining the receptor membrane potential (receptor current), nutrient and ion transport, odorant solubility, and various signaling mechanisms. In this study, we identify V-ATPase expression and localization in the Drosophila melanogaster antenna using bioinformatics and immunohistochemistry. Elucidating an olfactory V-ATPase function will improve our current understanding of how support cells contribute to Drosophila’s sense of smell. Full article

Biologists, philosophers, and mathematicians building upon Robert Rosen’s non-algorithmic theories of life using Relational Biology and Category Theory have continued to develop his theory and modeling approaches. There has been general agreement that the impredicative, self-referential, and complex nature of living systems negates an algorithmic approach. Rosen’s main goal was to answer, “What is Life?”. Many believe he provided the best but minimum answer using a cellular, metabolism–repair or (M, R)-system as a category-theoretic model. It has been challenging, however, to incorporate his theory to develop a fully non-algorithmic methodology that retains the essence of his thinking while creating more operational models of living systems that can be used to explore other facets of life and answer different questions. Living systems do more than the minimum in the real world beyond the confines of definition alone. For example, ecologists ask how living systems inherently mitigate existential risk from climate change and biodiversity loss through their complex self-organization. Loop Analysis, a signed graph technique, is discussed as a hybrid algorithmic/non-algorithmic methodology in Relational Biology. This methodology can be used at the ecosystem level with standard non-algorithmic field data as per McAllister’s description of the algorithmic incompressibility of empirical data of this type. An example is described showing how the North Atlantic Carbon Pump, an important planetary life support system, is situated in the plankton community and functions as a mutualistic ecosystem chimera. It captures carbon from the atmosphere as an extended (M, R)-system and processes it until it is sequestered in the marine sediments. This is an important process to alleviate climate change in magnitude equal to or larger than the sequestration of carbon on land with forests. It is suggested that the ecosystem level should replace the cellular and organismic levels as the main system unit in biology and evolution since all life exists and evolves with full functional potential in ecosystem networks and not laboratory test tubes. The plankton ecosystem is the largest after the total biosphere and consists of evolutionary links and relationships that have existed for eons of time. If there was ever a genuine robust, highly self-organized ecosystem, it would be planktonic. Severing the links in these thermodynamically open networks by focusing on lower levels of the biological hierarchy loses the critical organization of how life exists on this planet. There is no theory to regain this crucial ‘omitted’ ecological relational causality at the cell or organismal levels. At the end of the paper, some future directions are outlined. Full article

Xanthomonas citri subsp. citri (Xcc) is a Gram-negative bacterium responsible for citrus canker, a significant threat to citrus crops. ClpV is a critical protein in the type VI secretion system (T6SS) as an ATPase involved in bacterial motility, adhesion, and pathogenesis to the host for some pathogenic bacteria. In order to investigate the function of clpV gene in Xcc, the clpV-deletion strain ΔclpV was constructed, its biological properties were evaluated, and the differences in gene expression levels between the wild-type strain and ΔclpV were analyzed by transcriptomics. The results exhibited significantly reduced biofilm formation, extracellular polysaccharide synthesis, and swarming motility in ΔclpV compared to the wild-type strain. Although the clpV-deletion did not significantly affect bacterial growth or pathogenicity in terms of disease symptoms on citrus leaves, the mutant showed increased sensitivity to environmental stresses (NaCl, SDS, and H₂O₂) and antibiotics (β-lactams and aminoglycosides). Transcriptome analysis revealed that clpV-deletion altered the expression of motility-related genes and the efflux pump gene mexH. Our findings underscore the importance of ClpV in maintaining biofilm integrity and suggest a multifaceted role in adaptive strategies of Xcc, positioning ClpV as a potential target for mitigating citrus canker disease. Full article

Background: Biologics are a cornerstone in the treatment of severe cases of inflammatory bowel disease (IBD) and aim to control the disease and improve quality of life. This study investigated changes in nonbiologic medication prescriptions for IBD patients initiating biologic therapy in Germany. Methods: This study used data from anonymized pharmacy records in the German longitudinal prescription (LRx) database and included biologic-naive IBD patients who received their first biologic therapy prescription between 2016 and 2022. Changes in prescription rates and pill counts for nonbiologic medications (corticosteroids, 5-aminosalicylates (5-ASA), proton pump inhibitors, analgesics, immunosuppressants, Vitamin D, iron, and antibiotics) before and after the initiation of biologic therapy were assessed using descriptive statistics, McNemar’s tests, and Poisson regression models, adjusting for age and sex. Results: A total of 29,559 biologic-naive IBD patients were included. Prior to index, 91.2% received at least one nonbiologic medication prescription, where corticosteroids and 5-ASA were the most common. Postindex, the overall prescription rate decreased to 87.7%, with significant reductions in prescriptions observed for corticosteroids, 5-ASA, and immunosuppressants (p-values < 0.001). The mean (SD) pill count dropped from 704 (1712) to 514 (1651), with the largest mean differences (95% CI) having been for corticosteroids (−77.9 [−80.3 to −75.5]), 5-ASA (−61.6 [−65.2 to −58.1]), and immunosuppressants (−55.0 [−57.5 to −52.6]). Older patients tended to have greater decreases in pill counts for corticosteroids and 5-ASA, while males showed statistically significant reductions in pill count for immunosuppressants compared with females. Conclusions: This study demonstrates that the prescription of nonbiologic medications significantly decreased after biologic therapy initiation. The use of biologics may therefore lead to improved disease management and potentially better patient outcomes. Full article

A simple carrier phase based ultrafiltration technique that is akin to liquid chromatography and is suitable for medium-to-large volume sample preparation in the laboratory is discussed in this paper. A membrane module was integrated with a liquid chromatography system in a “plug and play” mode for ease of sample handling, and recovery of species retained by the membrane. The sample injector and pump were used for feed injection and for driving ultrafiltration, while the sensors and detectors were used for real-time monitoring of the separation process. The concentration of retained species was enriched by utilizing controlled concentration polarization. The recovery of the retained and enriched species was enhanced by backflow of carrier phase through the membrane using appropriate combination of valves. The backflow of carrier phase also cleaned the membrane and limited the extent of membrane fouling. Proof-of-concept of the proposed technique was provided by conducting different types of protein ultrafiltration experiments. The technique was shown to be suitable for carrying out protein fractionation, desalting, buffer exchange and concentration enrichment. Adoption of this approach is likely to make ultrafiltration easier to use for non-specialized users in biological research laboratories. Other advantages include enhanced product recovery, significant reduction in the number of diavolumes of buffer needed for conducting desalting and buffer exchange, minimal membrane fouling and the potential for repeated use of the same module for multiple separation cycles. Full article