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17 pages, 706 KiB  
Article
Empirical Energy Consumption Estimation and Battery Operation Analysis from Long-Term Monitoring of an Urban Electric Bus Fleet
by Tom Klaproth, Erik Berendes, Thomas Lehmann, Richard Kratzing and Martin Ufert
World Electr. Veh. J. 2025, 16(8), 419; https://doi.org/10.3390/wevj16080419 - 25 Jul 2025
Abstract
Electric buses are key in the strategy towards a greenhouse-gas-neutral fleet. However, their restrictions in terms of range and refueling as well as their increased price point present new challenges for public transport companies. This study aims to address, based on real-world operational [...] Read more.
Electric buses are key in the strategy towards a greenhouse-gas-neutral fleet. However, their restrictions in terms of range and refueling as well as their increased price point present new challenges for public transport companies. This study aims to address, based on real-world operational data, how energy consumption and charging behavior affect battery aging and how operational strategies can be optimized to extend battery life under realistic conditions. This article presents an energy consumption analysis with respect to ambient temperatures and average vehicle speed based exclusively on real-world data of an urban bus fleet, providing a data foundation for range forecasting and infrastructure planning optimized for public transport needs. Additionally, the State of Charge (SOC) window during operation and vehicle idle time as well as the charging power were analyzed in this case study to formulate recommendations towards a more battery-friendly treatment. The central research question is whether battery-friendly operational strategies—such as reduced charging power and lower SOC windows—can realistically be implemented in daily public transport operations. The impact of the recommendations on battery lifetime is estimated using a battery aging model on drive cycles. Finally, the reduction in CO2 emissions compared to diesel buses is estimated. Full article
(This article belongs to the Special Issue Zero Emission Buses for Public Transport)
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15 pages, 1045 KiB  
Article
Physician Practice Affiliation Drives Site of Care Cost Differentials: An Opportunity to Reduce Healthcare Expenditures
by Deepak A. Kapoor, Mark Camel, David Eagle, Lauren C. Makhoul, Justin Maroney, Zhou Yang and Paul Berggreen
J. Mark. Access Health Policy 2025, 13(3), 36; https://doi.org/10.3390/jmahp13030036 - 24 Jul 2025
Abstract
The continued migration of physicians from independent practice to affiliation with larger entities has garnered significant scrutiny. These affiliation models include hospitals and health systems, payers and corporate entities, and management services organizations, which may or may not be private equity (PE)-backed. Data [...] Read more.
The continued migration of physicians from independent practice to affiliation with larger entities has garnered significant scrutiny. These affiliation models include hospitals and health systems, payers and corporate entities, and management services organizations, which may or may not be private equity (PE)-backed. Data on the impact of different physician affiliation models on cost of care is limited. We examined the relationship between provider affiliation model, site of care (SOC), and cost of care for certain high-volume procedures in procedure-intensive specialties for both Medicare and commercial insurance. We found that hospital-affiliated physicians are least likely—and PE-affiliated physicians are most likely—to provide care in lower-cost settings. For both Medicare and commercial insurance, SOC contributes meaningfully to procedure unit price, which is consistently greater in hospital-based settings. These findings suggest that the physician affiliation model and associated SOC cost differentials contribute materially to healthcare expenditures. As the Medicare cost differentials are set by statute and regulations, strategies such as site-neutral payments are needed to mitigate the monetary impact of historical and future physician practice migration. Full article
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19 pages, 2530 KiB  
Article
Soil Microbiome Drives Depth-Specific Priming Effects in Picea schrenkiana Forests Following Labile Carbon Input
by Kejie Yin, Lu Gong, Xinyu Ma, Xiaochen Li and Xiaonan Sun
Microorganisms 2025, 13(8), 1729; https://doi.org/10.3390/microorganisms13081729 - 24 Jul 2025
Abstract
The priming effect (PE), a microbially mediated process, critically regulates the balance between carbon sequestration and mineralization. This study used soils from different soil depths (0–20 cm, 20–40 cm, and 40–60 cm) under Picea schrenkiana forest in the Tianshan Mountains as the research [...] Read more.
The priming effect (PE), a microbially mediated process, critically regulates the balance between carbon sequestration and mineralization. This study used soils from different soil depths (0–20 cm, 20–40 cm, and 40–60 cm) under Picea schrenkiana forest in the Tianshan Mountains as the research object. An indoor incubation experiment was conducted by adding three concentrations (1% SOC, 2% SOC, and 3% SOC) of 13C-labelled glucose. We applied 13C isotope probe-phospholipid fatty acid (PLFA-SIP) technology to investigate the influence of readily labile organic carbon inputs on soil priming effect (PE), microbial community shifts at various depths, and the mechanisms underlying soil PE. The results indicated that the addition of 13C-labeled glucose accelerated the mineralization of soil organic carbon (SOC); CO2 emissions were highest in the 0–20 cm soil layer and decreased trend with increasing soil depth, with significant differences observed across different soil layers (p < 0.05). Soil depth had a positive direct effect on the cumulative priming effect (CPE); however, it showed negative indirect effects through physico-chemical properties and microbial biomass. The CPE of the 0–20 cm soil layer was significantly positively correlated with 13C-Gram-positive bacteria, 13C-Gram-negative bacteria, and 13C-actinomycetes. The CPE of the 20–40 cm and 40–60 cm soil layers exhibited a significant positive correlation with cumulative mineralization (CM) and microbial biomass carbon (MBC). Glucose addition had the largest and most significant positive effect on the CPE. Glucose addition positively affected PLFAs and particularly microbial biomass. This study provides valuable insights into the dynamics of soil carbon pools at varying depths following glucose application, advancing the understanding of forest soil carbon sequestration. Full article
(This article belongs to the Section Environmental Microbiology)
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21 pages, 2263 KiB  
Article
Elevational Patterns and Drivers of Soil Total, Microbial, and Enzymatic C:N:P Stoichiometry in Karst Peak-Cluster Depressions in Southwestern China
by Siyu Chen, Chaohao Xu, Cong Hu, Chaofang Zhong, Zhonghua Zhang and Gang Hu
Forests 2025, 16(8), 1216; https://doi.org/10.3390/f16081216 - 24 Jul 2025
Abstract
Elevational gradients in temperature, moisture, and vegetation strongly influence soil nutrient content and stoichiometry in mountainous regions. However, exactly how total, microbial, and enzymatic carbon (C), nitrogen (N), and phosphorus (P) stoichiometry vary with elevation in karst peak-cluster depressions remains poorly understood. To [...] Read more.
Elevational gradients in temperature, moisture, and vegetation strongly influence soil nutrient content and stoichiometry in mountainous regions. However, exactly how total, microbial, and enzymatic carbon (C), nitrogen (N), and phosphorus (P) stoichiometry vary with elevation in karst peak-cluster depressions remains poorly understood. To address this, we studied soil total, microbial, and enzymatic C:N:P stoichiometry in seasonal rainforests within karst peak-cluster depressions in southwestern China at different elevations (200, 300, 400, and 500 m asl) and depths (0–20 and 20–40 cm). We found that soil organic carbon (SOC), total nitrogen (TN), and the C:P and N:P ratios increased significantly with elevation, whereas total phosphorus (TP) decreased. Microbial phosphorus (MBP) also declined with elevation, while the microbial N:P ratio rose. Activities of nitrogen- (β-N-acetylglucosaminidase and L-leucine aminopeptidase combined) and phosphorus-related enzymes (alkaline phosphatase) increased markedly with elevation, suggesting potential phosphorus limitation for plant growth at higher elevations. Our results suggest that total, microbial, and enzymatic soil stoichiometry are collectively shaped by topography and soil physicochemical properties, with elevation, pH, and exchangeable calcium (ECa) acting as the key drivers. Microbial stoichiometry exhibited positive interactions with soil stoichiometry, while enzymatic stoichiometry did not fully conform to the expectations of resource allocation theory, likely due to the functional specificity of phosphatase. Overall, these findings enhance our understanding of C–N–P biogeochemical coupling in karst ecosystems, highlight potential nutrient limitations, and provide a scientific basis for sustainable forest management in tropical karst regions. Full article
(This article belongs to the Section Forest Soil)
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12 pages, 1633 KiB  
Article
Responses of Rhizospheric Microbial Communities to Brevibacillus laterosporus-Enhanced Reductive Soil Disinfestation in Continuous Cropping Systems
by Risheng Xu, Haijiao Liu, Yafei Chen, Zhen Guo, Juan Liu, Yue Li, Jingyi Mei, Tengfei Ma and Yanlong Chen
Agronomy 2025, 15(8), 1775; https://doi.org/10.3390/agronomy15081775 - 24 Jul 2025
Abstract
Reductive soil disinfestation (RSD) significantly alters soil characteristics, yet its combined effects with bacterial inoculation on subsequent rhizospheric microbial community composition remains poorly understood. To address this knowledge gap, we investigated the effects of RSD and endophytic Brevibacillus laterosporus inoculation on the composition, [...] Read more.
Reductive soil disinfestation (RSD) significantly alters soil characteristics, yet its combined effects with bacterial inoculation on subsequent rhizospheric microbial community composition remains poorly understood. To address this knowledge gap, we investigated the effects of RSD and endophytic Brevibacillus laterosporus inoculation on the composition, network, and predicted function of peanut rhizospheric bacteria and fungi. Our results demonstrated that RSD and B. laterosporus inoculation substantially increased rhizospheric bacterial diversity while reducing fungal diversity. Specifically, B. laterosporus-enhanced RSD significantly reshaped the bacterial community, resulting in increased relative abundances of Chloroflexi, Desulfobacterota, and Myxococcota while decreasing those of Firmicutes, Gemmatimonadota, and Acidobacteriota. The fungal community exhibited a more consistent response to RSD and B. laterosporus amendment, with reduced proportions of Ascomycota and Gemmatimonadota but an increase in Chytridiomycota. Network analysis revealed that B. laterosporus inoculation and RSD enhanced the bacterial species complexity and keystone taxa. Furthermore, canonical correspondence analysis indicated strong associations between the soil bacterial community and soil properties, including Eh, EC, NO3-N, and SOC. Our findings highlight that the shifts in bacterial taxa induced by B. laterosporus inoculation and RSD, particularly the keystone taxa identified in the network, may contribute to the suppression of soil-borne pathogens. Overall, this study provides a novel insight into the shifts in rhizospheric bacterial and fungal communities and their ecological functions after bacteria inoculation and RSD treatment. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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19 pages, 2388 KiB  
Article
Impact of Grassland Management System Intensity on Composition of Functional Groups and Soil Chemical Properties in Semi-Natural Grasslands
by Urška Lisec, Maja Prevolnik Povše, Miran Podvršnik and Branko Kramberger
Plants 2025, 14(15), 2274; https://doi.org/10.3390/plants14152274 - 24 Jul 2025
Abstract
Semi-natural grasslands are some of the most species-rich habitats in Europe and provide important ecosystem services such as biodiversity conservation, carbon sequestration and soil fertility maintenance. This study investigates how different intensities of grassland management affect the composition of functional groups and soil [...] Read more.
Semi-natural grasslands are some of the most species-rich habitats in Europe and provide important ecosystem services such as biodiversity conservation, carbon sequestration and soil fertility maintenance. This study investigates how different intensities of grassland management affect the composition of functional groups and soil chemical properties. Five grassland management systems were analyzed: Cut3—three cuts per year; LGI—low grazing intensity; CG—combined cutting and grazing; Cut4—four cuts per year; and HGI—high grazing intensity. The functional groups assessed were grasses, legumes and forbs, while soil samples from three depths (0–10, 10–20 and 20–30 cm) were analyzed for their chemical properties (soil organic carbon—SOC; soil total nitrogen—STN; inorganic soil carbon—SIC; soil organic matter—SOM; potassium oxide—K2O; phosphorus pentoxide—P2O5; C/N ratio; and pH) and physical properties (volumetric soil water content—VWC; bulk density—BD; and porosity—POR). The results showed that less intensive systems had a higher proportion of legumes, while species diversity, as measured via the Shannon index, was the highest in the Cut4 system. The CG system tended to have the highest SOC and STN at a 0–10 cm depth, with a similar trend observed for SOCstock at a 0–30 cm depth. The Cut4, HGI and CG systems also had an increased STNstock. Both grazing systems had the highest P2O5 content. A tendency towards a higher BD was observed in the top 10 cm of soil in the more intensive systems. Choosing a management strategy that is tailored to local climate and site conditions is crucial for maintaining grassland stability, enhancing carbon sequestration and promoting long-term sustainability in the context of climate change. Full article
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21 pages, 13413 KiB  
Article
Three-Dimensional Modeling of Soil Organic Carbon Stocks in Forest Ecosystems of Northeastern China Under Future Climate Warming Scenarios
by Shuai Wang, Shouyuan Bian, Zicheng Wang, Zijiao Yang, Chen Li, Xingyu Zhang, Di Shi and Hongbin Liu
Forests 2025, 16(8), 1209; https://doi.org/10.3390/f16081209 - 23 Jul 2025
Viewed by 101
Abstract
Understanding the detailed spatiotemporal variations in soil organic carbon (SOC) stocks is essential for assessing soil carbon sequestration potential. However, most existing studies predominantly focus on topsoil SOC stocks, leaving significant knowledge gaps regarding critical zones, depth-dependent variations, and key influencing factors associated [...] Read more.
Understanding the detailed spatiotemporal variations in soil organic carbon (SOC) stocks is essential for assessing soil carbon sequestration potential. However, most existing studies predominantly focus on topsoil SOC stocks, leaving significant knowledge gaps regarding critical zones, depth-dependent variations, and key influencing factors associated with deeper SOC stock dynamics. This study adopted a comprehensive methodology that integrates random forest modeling, equal-area soil profile analysis, and space-for-time substitution to predict depth-specific SOC stock dynamics under climate warming in Northeast China’s forest ecosystems. By combining these techniques, the approach effectively addresses existing research limitations and provides robust projections of soil carbon changes across various depth intervals. The analysis utilized 63 comprehensive soil profiles and 12 environmental predictors encompassing climatic, topographic, biological, and soil property variables. The model’s predictive accuracy was assessed using 10-fold cross-validation with four evaluation metrics: MAE, RMSE, R2, and LCCC, ensuring comprehensive performance evaluation. Validation results demonstrated the model’s robust predictive capability across all soil layers, achieving high accuracy with minimized MAE and RMSE values while maintaining elevated R2 and LCCC scores. Three-dimensional spatial projections revealed distinct SOC distribution patterns, with higher stocks concentrated in central regions and lower stocks prevalent in northern areas. Under simulated warming conditions (1.5 °C, 2 °C, and 4 °C increases), both topsoil (0–30 cm) and deep-layer (100 cm) SOC stocks exhibited consistent declining trends, with the most pronounced reductions observed under the 4 °C warming scenario. Additionally, the study identified mean annual temperature (MAT) and normalized difference vegetation index (NDVI) as dominant environmental drivers controlling three-dimensional SOC spatial variability. These findings underscore the importance of depth-resolved SOC stock assessments and suggest that precise three-dimensional mapping of SOC distribution under various climate change projections can inform more effective land management strategies, ultimately enhancing regional soil carbon storage capacity in forest ecosystems. Full article
(This article belongs to the Special Issue Carbon Dynamics of Forest Soils Under Climate Change)
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15 pages, 2830 KiB  
Article
Predictive Framework for Lithium Plating Risk in Fast-Charging Lithium-Ion Batteries: Linking Kinetics, Thermal Activation, and Energy Loss
by Junais Habeeb Mokkath
Batteries 2025, 11(8), 281; https://doi.org/10.3390/batteries11080281 - 22 Jul 2025
Viewed by 97
Abstract
Fast charging accelerates lithium-ion battery operation but increases the risk of lithium (Li) plating—a process that undermines efficiency, longevity, and safety. Here, we introduce a predictive modeling framework that captures the onset and severity of Li plating under practical fast-charging conditions. By integrating [...] Read more.
Fast charging accelerates lithium-ion battery operation but increases the risk of lithium (Li) plating—a process that undermines efficiency, longevity, and safety. Here, we introduce a predictive modeling framework that captures the onset and severity of Li plating under practical fast-charging conditions. By integrating an empirically parameterized SOC threshold model with time-dependent kinetic simulations and Arrhenius based thermal analysis, we delineate operating regimes prone to irreversible Li accumulation. The framework distinguishes reversible and irreversible plating fractions, quantifies energy losses, and identifies a critical activation energy (0.25 eV) associated with surface-limited deposition. Visualizations in the form of severity maps and voltage-zone risk classifications enable direct application to battery management systems. This approach bridges electrochemical degradation modeling with real-time charge protocol design, offering a practical tool for safe, high-performance battery operation. Full article
(This article belongs to the Section Battery Modelling, Simulation, Management and Application)
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35 pages, 5898 KiB  
Article
A Unified Machine Learning Framework for Li-Ion Battery State Estimation and Prediction
by Afroditi Fouka, Alexandros Bousdekis, Katerina Lepenioti and Gregoris Mentzas
Appl. Sci. 2025, 15(15), 8164; https://doi.org/10.3390/app15158164 - 22 Jul 2025
Viewed by 110
Abstract
The accurate estimation and prediction of internal states in lithium-ion (Li-Ion) batteries, such as State of Charge (SoC) and Remaining Useful Life (RUL), are vital for optimizing battery performance, safety, and longevity in electric vehicles and other applications. This paper presents a unified, [...] Read more.
The accurate estimation and prediction of internal states in lithium-ion (Li-Ion) batteries, such as State of Charge (SoC) and Remaining Useful Life (RUL), are vital for optimizing battery performance, safety, and longevity in electric vehicles and other applications. This paper presents a unified, modular, and extensible machine learning (ML) framework designed to address the heterogeneity and complexity of battery state prediction tasks. The proposed framework supports flexible configurations across multiple dimensions, including feature engineering, model selection, and training/testing strategies. It integrates standardized data processing pipelines with a diverse set of ML models, such as a long short-term memory neural network (LSTM), a convolutional neural network (CNN), a feedforward neural network (FFNN), automated machine learning (AutoML), and classical regressors, while accommodating heterogeneous datasets. The framework’s applicability is demonstrated through five distinct use cases involving SoC estimation and RUL prediction using real-world and benchmark datasets. Experimental results highlight the framework’s adaptability, methodological transparency, and robust predictive performance across various battery chemistries, usage profiles, and degradation conditions. This work contributes to a standardized approach that facilitates the reproducibility, comparability, and practical deployment of ML-based battery analytics. Full article
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21 pages, 4580 KiB  
Article
Response of Patch Characteristics of Carex alatauensis S. R. Zhang to Establishment Age in Artificial Grasslands on the Qinghai–Tibet Plateau, China
by Liangyu Lyu, Chao Wang, Pei Gao, Fayi Li, Qingqing Liu and Jianjun Shi
Plants 2025, 14(15), 2257; https://doi.org/10.3390/plants14152257 - 22 Jul 2025
Viewed by 96
Abstract
To clarify the ecological mechanisms underlying the succession of artificial grasslands to native alpine meadows and systematically reveal the patterns of ecological restoration in artificial grasslands in the Qinghai–Tibet Plateau, this study provides a theoretical basis for alpine meadow ecological restoration. In this [...] Read more.
To clarify the ecological mechanisms underlying the succession of artificial grasslands to native alpine meadows and systematically reveal the patterns of ecological restoration in artificial grasslands in the Qinghai–Tibet Plateau, this study provides a theoretical basis for alpine meadow ecological restoration. In this study, artificial grassland and degraded grassland (CK) with different restoration years (20 years, 16 years, 14 years, and 2 years) in the Qinghai–Tibet Plateau were taken as research objects. We focused on the tillering characteristics, patch number, community structure evolution, and soil properties of the dominant species, C. alatauensis, and systematically explored the ecological restoration law by comparing and analyzing ecological indicators in different restoration years. The results showed the following: (1) With the extension of restoration years, the asexual reproduction ability of C. alatauensis was enhanced, the patches became large, and aboveground/underground biomass significantly accumulated. (2) Community structure optimization meant that the coverage and biomass of Cyperaceae plants increased with restoration age, while those of Poaceae plants decreased. The diversity of four species in 20A of restored grasslands showed significant increases (10.71–19.18%) compared to 2A of restored grasslands. (3) Soil improvement effect: The contents of soil organic carbon (SOC), total phosphorus (TP), nitrate nitrogen (NN), and available phosphorus (AP) increased significantly with the restoration years (in 20A, the SOC content in the 0–10 cm soil layer increased by 57.5% compared with CK), and the soil pH gradually approached neutrality. (4) In artificial grasslands with different restoration ages (20A, 16A, and 14A), significant or highly significant correlations existed between C. alatauensis tiller characteristics and community and soil properties. In conclusion, C. alatauensis in artificial grasslands drives population enhancement, community succession, and soil improvement through patch expansion. Full article
(This article belongs to the Section Plant–Soil Interactions)
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20 pages, 2546 KiB  
Article
Positive Relationships Between Soil Organic Carbon and Tree Physical Structure Highlights Significant Carbon Co-Benefits of Beijing’s Urban Forests
by Rentian Xie, Syed M. H. Shah, Chengyang Xu, Xianwen Li, Suyan Li and Bingqian Ma
Forests 2025, 16(8), 1206; https://doi.org/10.3390/f16081206 - 22 Jul 2025
Viewed by 187
Abstract
Increasing soil carbon storage is an important strategy for achieving sustainable development. Enhancing soil carbon sequestration capacity can effectively reduce the concentration of atmospheric carbon dioxide, which not only contributes to the carbon neutrality goal but also helps maintain ecosystem stability. Based on [...] Read more.
Increasing soil carbon storage is an important strategy for achieving sustainable development. Enhancing soil carbon sequestration capacity can effectively reduce the concentration of atmospheric carbon dioxide, which not only contributes to the carbon neutrality goal but also helps maintain ecosystem stability. Based on 146 soil samples collected at plot locations selected across Beijing, we examined relationships between soil organic carbon (SOC) and key characteristics of urban forests, including their spatial structure and species complexity. The results showed that SOC in the topsoil with a depth of 20 cm was highest over forested plots (6.384 g/kg–20.349 g/kg) and lowest in soils without any vegetation cover (5.586 g/kg–6.783 g/kg). The plots with herbaceous/shrub vegetation but no tree cover had SOC values in between (5.586 g/kg–15.162 g/kg). The plot data revealed that SOC was better correlated with the physical structure than the species diversity of Beijing’s urban trees. The correlation coefficients (r) between SOC and five physical structure indicators, including average diameter at breast height (DBH), average tree height, basal area density, and the diversity of DBH and tree height, ranged from 0.32 to 0.52, whereas the r values for four species diversity indicators ranged from 0.10 to 0.25, two of which were not statistically different from 0. Stepwise linear regression analyses revealed that the species diversity indicators were not very sensitive to SOC variations among a large portion of the plots and were about half as effective as the physical structure indicators for explaining the total variance of SOC. These results suggest that urban planning and greenspace management policies could be tailored to maximize the carbon co-benefits of urban land. Specifically, trees should be planted in urban areas wherever possible, preferably as densely as what can be allowed given other urban planning considerations. Protection of large, old trees should be encouraged, as these trees will continue to sequester and store large quantities of carbon in above- and belowground biomass as well as in soil. Such policies will enhance the contribution of urban land, especially urban forests and other greenspaces, to nature-based solutions (NBS) to climate change. Full article
(This article belongs to the Special Issue Ecosystem Services of Urban Forest)
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11 pages, 402 KiB  
Article
Antibiotic Effect on Clinical Response and Remission in Pediatric Inflammatory Bowel Disease
by Caeley Dye, Caroline M. Sierra, Khaled Bahjri, Mallory Cohen and Gautam Nagendra
Pediatr. Rep. 2025, 17(4), 77; https://doi.org/10.3390/pediatric17040077 - 21 Jul 2025
Viewed by 98
Abstract
Objective: Gut dysbiosis has been implicated in the pathology of inflammatory bowel disease (IBD). There is some evidence to suggest that the use of antibiotic treatment can incite an early clinical response or remission when used in conjunction with standard-of-care (SOC) therapy [...] Read more.
Objective: Gut dysbiosis has been implicated in the pathology of inflammatory bowel disease (IBD). There is some evidence to suggest that the use of antibiotic treatment can incite an early clinical response or remission when used in conjunction with standard-of-care (SOC) therapy to treat IBD-related flares. Furthermore, antibiotics have been historically investigated for use as a bridge when initiating biologic therapy while waiting for peak biologic treatment effect to occur. This study investigated and compared the time to clinical response when treated with combination antibiotics, metronidazole monotherapy, or SOC therapy in pediatric patients with an active IBD flare. Methods: This study was a retrospective, Institution Review Board-approved, single-centered cohort study which included patients who were less than 18 years of age with a confirmed diagnosis of IBD who received conventional treatment alone or with either combination antibiotic therapy or metronidazole monotherapy to treat an active IBD flare between March 2013 and January 2024. Patients were excluded if they received antibiotic therapy to treat an active infection, had positive stool cultures or enteric pathogen polymerase chain reaction panel, or had colonic disease limited to the rectum. Results: Fifty-nine patients were included and divided into metronidazole monotherapy (n = 18), SOC therapy (n = 20), and combination antibiotics (n = 21). The primary outcome of days to clinical response was not significantly different across all groups; however, patients who received combination antibiotics achieved the fastest time to clinical response (median (IRQ))—4 days (1, 65), compared to 7.5 days (1, 119) for the SOC group and 9 days (2, 217) for the metronidazole group. Secondary outcomes of achievement of clinical response, remission, or failure were determined to be non-significant between all groups. Conclusions: There is no significant difference in time to clinical response, attaining clinical response or remission, or treatment failure rate for patients treated with combination antibiotics, metronidazole monotherapy, or SOC. However, results of this study suggest that the use of combination antibiotics plus SOC may lead to a faster time to clinical response and remission compared to SOC therapy alone. Further studies are warranted to elucidate the role of antimicrobial therapy in management of pediatric IBD. Full article
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19 pages, 4329 KiB  
Article
Quantifying Soil Carbon Sequestration Potential Through Carbon Farming Practices with RothC Model Adapted to Lithuania
by Gustė Metrikaitytė Gudelė and Jūratė Sužiedelytė Visockienė
Land 2025, 14(7), 1497; https://doi.org/10.3390/land14071497 - 19 Jul 2025
Viewed by 264
Abstract
Climate change poses one of the greatest challenges of our time, with greenhouse gas (GHG) emissions significantly contributing to global warming. The agriculture, forestry, and land-use (AFOLU) sectors not only emit GHGs but also offer the potential for carbon sequestration, which can mitigate [...] Read more.
Climate change poses one of the greatest challenges of our time, with greenhouse gas (GHG) emissions significantly contributing to global warming. The agriculture, forestry, and land-use (AFOLU) sectors not only emit GHGs but also offer the potential for carbon sequestration, which can mitigate climate change. This study presents a methodological framework for estimating soil organic carbon (SOC) changes based on carbon farming practices in northern Lithuania. Using satellite-derived indicators of cover crops, no-till farming, and residue retention combined with soil and climate data, SOC dynamics were modeled across the Joniškis municipality for the period 2019–2020 using the Rothamsted Carbon Model (RothC) model. The integration of geospatial data and process-based modeling allowed for spatial estimation of SOC change, revealing positive trends ranging from 0.23 to 0.32 t C ha−1 year−1. Higher increases were observed in areas where multiple carbon farming practices overlapped. The proposed workflow demonstrates the potential of combining Earth observation and modeling approaches for regional-scale carbon assessment and provides a basis for future applications in sustainable land management and climate policy support. Full article
(This article belongs to the Special Issue Soils and Land Management Under Climate Change (Second Edition))
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19 pages, 17948 KiB  
Article
Temporal Transcriptome Analysis Reveals Core Pathways and Orphan Gene EARLY FLOWERING 1 Regulating Floral Transition in Chinese Cabbage
by Hong Lang, Yuting Zhang, Shouhe Zhao, Kexin Li, Xiaonan Li and Mingliang Jiang
Plants 2025, 14(14), 2236; https://doi.org/10.3390/plants14142236 - 19 Jul 2025
Viewed by 208
Abstract
The floral transition in Chinese cabbage (Brassica rapa ssp. pekinensis) is governed by a complex interplay of gene expression and hormonal regulation. Temporal transcriptome profiling was conducted across three developmental stages: pre-bolting (PBS), bolting (BS), and flowering stages (FS), to investigate [...] Read more.
The floral transition in Chinese cabbage (Brassica rapa ssp. pekinensis) is governed by a complex interplay of gene expression and hormonal regulation. Temporal transcriptome profiling was conducted across three developmental stages: pre-bolting (PBS), bolting (BS), and flowering stages (FS), to investigate the underlying molecular mechanisms. A total of 7092 differentially expressed genes (DEGs) were identified, exhibiting distinct expression trajectories during the transition. Moreover, functional enrichment analyses revealed strong associations with plant hormone signaling, MAPK pathways, and developmental regulation processes. Key flowering-related genes, such as BrFLM, BrAP2, BrFD, BrFT, and BrSOC1s displayed antagonistic expression patterns. Hormonal pathways involving auxin, ABA, ET, BR, GA, JA, CK, and SA showed stage-dependent modulation. Further, orphan genes (OGs), especially EARLY FLOWERING 1 (EF1), showed significant upregulation during the transition, which exhibited 1.84-fold and 1.93-fold increases at BS and FS compared to PBS, respectively (p < 0.05). Functional validation through EF1 overexpression (EF1OE) in Arabidopsis consistently promoted early flowering. The expression levels of AtFT and AtSOC1 were significantly upregulated in EF1OE lines compared to wild-type (WT) plants. The findings contribute to understanding the coordinated genetic and hormonal events driving floral development in Chinese cabbage, suggesting EF1 as a candidate for bolting resistance breeding. This work also expands the existing regulatory framework through the successful integration of OGs into the complex floral induction system of Brassica crops. Full article
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14 pages, 846 KiB  
Article
Uncovering Allele-Specific Expression Patterns Associated with Sea Lice (Caligus rogercresseyi) Burden in Atlantic Salmon
by Pablo Cáceres, Paulina López, Carolina Araya, Daniela Cichero, Liane N. Bassini and José M. Yáñez
Genes 2025, 16(7), 841; https://doi.org/10.3390/genes16070841 - 19 Jul 2025
Viewed by 217
Abstract
Background/Objetives: Sea lice (Caligus rogercresseyi) pose a major threat to Atlantic salmon (Salmo salar) aquaculture by compromising fish health and reducing production efficiency. While genetic variation in parasite load has been reported, the molecular mechanisms underlying this variation remain [...] Read more.
Background/Objetives: Sea lice (Caligus rogercresseyi) pose a major threat to Atlantic salmon (Salmo salar) aquaculture by compromising fish health and reducing production efficiency. While genetic variation in parasite load has been reported, the molecular mechanisms underlying this variation remain unclear. Methods: two sea lice challenge trials were conducted, achieving high infestation rates (47.5% and 43.5%). A total of 85 fish, selected based on extreme phenotypes for lice burden (42 low, 43 high), were subjected to transcriptomic analysis. Differential gene expression was integrated with allele-specific expression (ASE) analysis to uncover cis-regulatory variation influencing host response. Results: Sixty genes showed significant ASE (p < 0.05), including 33 overexpressed and 27 underexpressed. Overexpressed ASE genes included Keratin 15, Collagen IV/V, TRIM16, and Angiopoietin-1-like, which are associated with epithelial integrity, immune response, and tissue remodeling. Underexpressed ASE genes such as SOCS3, CSF3R, and Neutrophil cytosolic factor suggest individual variation in cytokine signaling and oxidative stress pathways. Conclusions: several ASE genes co-localized with previously identified QTLs for sea lice resistance, indicating that cis-regulatory variants contribute to phenotypic differences in parasite susceptibility. These results highlight ASE analysis as a powerful tool to identify functional regulatory elements and provide valuable candidates for selective breeding and genomic improvement strategies in aquaculture. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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