Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Article Types

Countries / Regions

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Search Results (594)

Search Parameters:
Keywords = PAX9

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
27 pages, 3262 KiB  
Article
Energy-Efficient Gold Flotation via Coarse Particle Generation Using VSI and HPGR Comminution
by Sindhura Thatipamula and Sheila Devasahayam
Materials 2025, 18(15), 3553; https://doi.org/10.3390/ma18153553 - 29 Jul 2025
Viewed by 181
Abstract
This study investigates the impact of two comminution technologies—Vertical Shaft Impactors (VSI) and High-Pressure Grinding Rolls (HPGR)—on gold flotation performance, using ore samples from the Ballarat Gold Mine, Australia. The motivation stems from the growing need to improve energy efficiency and flotation recovery [...] Read more.
This study investigates the impact of two comminution technologies—Vertical Shaft Impactors (VSI) and High-Pressure Grinding Rolls (HPGR)—on gold flotation performance, using ore samples from the Ballarat Gold Mine, Australia. The motivation stems from the growing need to improve energy efficiency and flotation recovery in mineral processing, particularly under increasing economic and environmental constraints. Despite the widespread use of HPGR and VSI in the industry, limited comparative studies have explored their effects on downstream flotation behavior. Laboratory-scale experiments were conducted across particle size fractions (300–600 µm) using two collector types—Potassium Amyl Xanthate (PAX) and DSP002 (a proprietary dithiophosphate collector) to assess differences in flotation recovery, concentrate grade, and specific energy consumption. The results reveal that HPGR produces more fines and micro-cracks, enhancing liberation but also increasing gangue entrainment and energy demand. Conversely, VSI produces coarser, cubical particles with fewer slimes, achieving higher flotation grades and recoveries at lower energy input. VSI at 600 µm demonstrated the highest flotation efficiency (4241) with only 9.79 kWh/t energy input. These findings support the development of hybrid or tailored comminution strategies for improved flotation selectivity and sustainable processing. Full article
(This article belongs to the Section Construction and Building Materials)
Show Figures

Graphical abstract

18 pages, 14270 KiB  
Article
Long-Term Engraftment and Satellite Cell Expansion from Human PSC Teratoma-Derived Myogenic Progenitors
by Zahra Khosrowpour, Nivedha Ramaswamy, Elise N. Engquist, Berkay Dincer, Alisha M. Shah, Hossam A. N. Soliman, Natalya A. Goloviznina, Peter I. Karachunski and Michael Kyba
Cells 2025, 14(15), 1150; https://doi.org/10.3390/cells14151150 - 25 Jul 2025
Viewed by 280
Abstract
Skeletal muscle regeneration requires a reliable source of myogenic progenitor cells capable of forming new fibers and creating a self-renewing satellite cell pool. Human induced pluripotent stem cell (hiPSC)-derived teratomas have emerged as a novel in vivo platform for generating skeletal myogenic progenitors, [...] Read more.
Skeletal muscle regeneration requires a reliable source of myogenic progenitor cells capable of forming new fibers and creating a self-renewing satellite cell pool. Human induced pluripotent stem cell (hiPSC)-derived teratomas have emerged as a novel in vivo platform for generating skeletal myogenic progenitors, although in vivo studies to date have provided only an early single-time-point snapshot. In this study, we isolated a specific population of CD82+ ERBB3+ NGFR+ cells from human iPSC-derived teratomas and verified their long-term in vivo regenerative capacity following transplantation into NSG-mdx4Cv mice. Transplanted cells engrafted, expanded, and generated human Dystrophin+ muscle fibers that increased in size over time and persisted stably long-term. A dynamic population of PAX7+ human satellite cells was established, initially expanding post-transplantation and declining moderately between 4 and 8 months as fibers matured. MyHC isoform analysis revealed a time-based shift from embryonic to neonatal and slow fiber types, indicating a slow progressive maturation of the graft. We further show that these progenitors can be cryopreserved and maintain their engraftment potential. Together, these findings give insight into the evolution of teratoma-derived human myogenic stem cell grafts, and highlight the long-term regenerative potential of teratoma-derived human skeletal myogenic progenitors. Full article
Show Figures

Figure 1

13 pages, 573 KiB  
Review
Developmental Programming and Postnatal Modulations of Muscle Development in Ruminants
by Kiersten Gundersen and Muhammad Anas
Biology 2025, 14(8), 929; https://doi.org/10.3390/biology14080929 - 24 Jul 2025
Viewed by 322
Abstract
Prenatal and postnatal skeletal muscle development in ruminants is coordinated by interactions between genetic, nutritional, epigenetic, and endocrine factors. This review focuses on the influence of maternal nutrition during gestation on fetal myogenesis, satellite cell dynamics, and myogenic regulatory factors expression, including MYF5 [...] Read more.
Prenatal and postnatal skeletal muscle development in ruminants is coordinated by interactions between genetic, nutritional, epigenetic, and endocrine factors. This review focuses on the influence of maternal nutrition during gestation on fetal myogenesis, satellite cell dynamics, and myogenic regulatory factors expression, including MYF5, MYOD1, and MYOG. Studies in sheep and cattle indicate that nutrient restriction or overnutrition alters muscle fiber number, the cross-sectional area, and the transcriptional regulation of myogenic genes in offspring. Postnatally, muscle hypertrophy is primarily mediated by satellite cells, which are activated via PAX7, MYOD, and MYF5, and regulated through mechanisms such as CARM1-induced chromatin remodeling and miR-31-mediated mRNA expression. Hormonal signaling via the GH–IGF1 axis and thyroid hormones further modulate satellite cell proliferation and protein accretion. Genetic variants, such as myostatin mutations in Texel sheep and Belgian Blue cattle, enhance muscle mass but may compromise reproductive efficiency. Nutritional interventions, including the plane of nutrition, supplementation strategies, and environmental stressors such as heat and stocking density, significantly influence muscle fiber composition and carcass traits. This review provides a comprehensive overview of skeletal muscle programming in ruminants, tracing the developmental trajectory from progenitor cell differentiation to postnatal growth and maturation. These insights underscore the need for integrated approaches combining maternal diet optimization, molecular breeding, and precision livestock management to enhance muscle growth, meat quality, and production sustainability in ruminant systems. Full article
Show Figures

Figure 1

20 pages, 1692 KiB  
Article
Molecular Mechanism of Metformin Regulating the Regeneration of Planarian Dugesia japonica Through miR-27b
by Kexin Yang, Minmin Feng, Chunmei Zhang, Zelong Zhao, Dandan Yin, Linxia Song and Zhenbiao Xu
Int. J. Mol. Sci. 2025, 26(15), 7092; https://doi.org/10.3390/ijms26157092 - 23 Jul 2025
Viewed by 189
Abstract
Metformin is one of the most commonly used medications to treat type 2 diabetes. In addition to lowering blood sugar, it can also promote the regeneration of certain organs or tissues. Planarian Dugesia japonica, with its remarkable regenerative capacity, has become an [...] Read more.
Metformin is one of the most commonly used medications to treat type 2 diabetes. In addition to lowering blood sugar, it can also promote the regeneration of certain organs or tissues. Planarian Dugesia japonica, with its remarkable regenerative capacity, has become an important model organism for studying pharmacology and regenerative medicine. Planarian eyespot regeneration involves precise tissue regeneration via mechanisms like cell proliferation, differentiation, and gene regulation following body damage. Experiments on planarian eyespot regeneration have confirmed that 1 mM metformin significantly promotes regeneration. Through analysis of the regenerating planarian miRNA database and the metformin-treated transcriptome database, combined with target gene prediction by TargetScan, the DjmiR-27b/DjPax6 axis was finally determined as the research focus. qPCR showed that metformin significantly affects the expression levels of DjmiR-27b and DjPax6. DjPax6 was identified as the target gene of DjmiR-27b through dual luciferase reporter gene analysis. Functional experiments revealed that metformin regulates the expression of DjPax6 via DjmiR-27b, thereby influencing the regeneration of planarian eyespots. In situ hybridization showed that both DjmiR-27b and DjPax6 are expressed throughout the entire body. This study reveals the molecular mechanism of metformin regulating planarian regeneration through miRNA, providing further insights into its role in the field of regeneration. Full article
(This article belongs to the Section Molecular Biology)
Show Figures

Figure 1

14 pages, 1077 KiB  
Article
Identification of Molecular Subtypes of B-Cell Acute Lymphoblastic Leukemia in Mexican Children by Whole-Transcriptome Analysis
by Norberto Sánchez-Escobar, María de los Ángeles Romero-Tlalolini, Haydeé Rosas-Vargas, Elva Jiménez-Hernández, Juan Carlos Núñez Enríquez, Angélica Rangel-López, José Manuel Sánchez López, Daniela Rojo-Serrato, América Mariana Jasso Mata, Efraín Abimael Márquez Aguilar, Janet Flores-Lujano, Juan Carlos Bravata-Alcántara, Jorge Alfonso Martín-Trejo, Silvia Jiménez-Morales, José Arellano-Galindo, Aurora Medina Sanson, Jose Gabriel Peñaloza Gonzalez, Juan Manuel Mejía-Aranguré and Minerva Mata-Rocha
Int. J. Mol. Sci. 2025, 26(14), 7003; https://doi.org/10.3390/ijms26147003 - 21 Jul 2025
Viewed by 312
Abstract
B-lineage acute lymphoblastic leukemia (B-ALL) is classified into more than 20 molecular subtypes, and next-generation sequencing has facilitated the identification of these with high sensitivity. Bulk RNA-seq analysis of bone marrow was realized to identify molecular subtypes in Mexican pediatric patients with B-ALL. [...] Read more.
B-lineage acute lymphoblastic leukemia (B-ALL) is classified into more than 20 molecular subtypes, and next-generation sequencing has facilitated the identification of these with high sensitivity. Bulk RNA-seq analysis of bone marrow was realized to identify molecular subtypes in Mexican pediatric patients with B-ALL. High hyperdiploidy (27.3%) was the most frequent molecular subtype, followed by DUX4 (13.6%), TCF3::PBX1 (9.1%), ETV6::RUNX1 (9.1%), Ph-like (9.1%), ETV6::RUNX1-like (9.1%), PAX5alt (4.5%), Ph (4.5%), KMT2A (4.5%), and ZNF384 (4.5%), with one patient presenting both the PAX5alt and low hypodiploidy subtypes (4.5%). The genes TYK2, SEMA6A, FLT3, NRAS, SETD2, JAK2, NT5C2, RAG1, and SPATS2L harbor deleterious missense variants across different B-ALL molecular subtypes. The Ph-like subtype exhibited mutations in STAT2, ADGRF1, TCF3, BCR, JAK2, and NRAS with overexpression of the CRLF2 gene. The DUX4 subtype showed mutually exclusive missense variants in the PDGRFA gene. Here, we have demonstrated the importance of using RNA-seq to facilitate the differential diagnosis of B-ALL with successful detection of gene fusions and mutations. This will aid both patient risk stratification and precision medicine. Full article
(This article belongs to the Special Issue Novel Agents and Molecular Research in Multiple Myeloma)
Show Figures

Figure 1

16 pages, 2549 KiB  
Article
An Engine Load Monitoring Approach for Quantifying Yearly Methane Slip Emissions from an LNG-Powered RoPax Vessel
by Benoit Sagot, Raphael Defossez, Ridha Mahi, Audrey Villot and Aurélie Joubert
J. Mar. Sci. Eng. 2025, 13(7), 1379; https://doi.org/10.3390/jmse13071379 - 21 Jul 2025
Viewed by 484
Abstract
Liquefied natural gas (LNG) is increasingly used as a marine fuel due to its capacity to significantly reduce emissions of particulate matter, sulfur oxides (SOx), and nitrogen oxides (NOx), compared to conventional fuels. In addition, LNG combustion produces less [...] Read more.
Liquefied natural gas (LNG) is increasingly used as a marine fuel due to its capacity to significantly reduce emissions of particulate matter, sulfur oxides (SOx), and nitrogen oxides (NOx), compared to conventional fuels. In addition, LNG combustion produces less carbon dioxide (CO2) than conventional marine fuels, and the use of non-fossil LNG offers further potential for reducing greenhouse gas emissions. However, this benefit can be partially offset by methane slip—the release of unburned methane in engine exhaust—which has a much higher global warming potential than CO2. This study presents an experimental evaluation of methane emissions from a RoPax vessel powered by low-pressure dual-fuel four-stroke engines with a direct mechanical propulsion system. Methane slip was measured directly during onboard testing and combined with a year-long analysis of engine operation using an Engine Load Monitoring (ELM) method. The yearly average methane slip coefficient (Cslip) obtained was 1.57%, slightly lower than values reported in previous studies on cruise ships (1.7%), and significantly lower than the default values specified by the FuelEU (3.1%) Maritime regulation and IMO (3.5%) LCA guidelines. This result reflects the ship’s operational profile, characterized by long crossings at high and stable engine loads. This study provides results that could support more representative emission assessments and can contribute to ongoing regulatory discussions. Full article
(This article belongs to the Special Issue Performance and Emission Characteristics of Marine Engines)
Show Figures

Figure 1

20 pages, 2516 KiB  
Article
Utilisation of Pyrometallurgical Wastes: Recovery of Copper from the Spent Refractory Bricks from a Smelter in Namibia
by Titus Nghipulile, Godfrey Dzinomwa, Benjamin Mapani, Jaquiline Tatenda Kurasha and Chanda Anamela Kambobe
Minerals 2025, 15(7), 722; https://doi.org/10.3390/min15070722 - 10 Jul 2025
Viewed by 280
Abstract
The reprocessing of metallurgical wastes to recover much-needed metals such as copper not only ensures an adequate supply of metals but also contributes to the cleaning of the environment. A copper smelter in Namibia accumulated significant amounts of spent refractory bricks that are [...] Read more.
The reprocessing of metallurgical wastes to recover much-needed metals such as copper not only ensures an adequate supply of metals but also contributes to the cleaning of the environment. A copper smelter in Namibia accumulated significant amounts of spent refractory bricks that are enriched with metal values including copper. This supposedly waste material can potentially serve as a supplement to the ore concentrate, as a smelter feedstock for this toll smelter. Representative samples of crushed bricks, designated as Sample 1 and Sample 2, were used for mineralogical characterisation and flotation test work. The assays for Sample 1 and Sample 2 were 14% Cu and 18% Cu, respectively. Microscopy results identified various copper phases including metallic Cu, bornite, malachite and chalcopyrite. Batch flotation tests were conducted to investigate the effect of grind size (P80 of 53, 75 and 106 μm), pulp pH (natural pulp pH, 10, 10.5 and 11) and collector (potassium amyl xanthate, PAX) dosage (70, 100 and 130 g/t) on the recovery of copper, concentrate grade and weight recovery. In some tests, a co-collector (dithiophosphate, DTP) and sulphidiser (Na2S) were also added in the quest to maximise the recovery of copper. Based on the test conditions investigated in this study, the grind size is the key variable affecting the recovery of copper. The best copper recovery of 86% (with a weight recovery in the range of 42 to 45% (w/w) and concentrate grade of 37% Cu) was achieved for the finest grind size of 53 μm. The reagent suite that yielded the best recovery was 70 g/t PAX with no addition of the sulphidiser while the pH was 10. There is scope for developing the process routes to recover other valuable metals such as iron, lead and zinc that are also in the spent bricks, as well as potential reuse of the spent bricks (after recovering valuable metals) to make new refractory bricks. Full article
(This article belongs to the Special Issue Circular Economy of Remining Secondary Raw Materials)
Show Figures

Figure 1

24 pages, 52994 KiB  
Article
The Naturally Bioactive Vicine Extracted from Faba Beans Is Responsible for the Transformation of Grass Carp (Ctenopharyngodon idella) into Crisp Grass Carp
by Xinyu Zheng, Minyi Luo, Bing Fu, Gen Kaneko, Jingjing Tian, Jun Xie, Jilun Hou and Ermeng Yu
Antioxidants 2025, 14(7), 813; https://doi.org/10.3390/antiox14070813 - 1 Jul 2025
Viewed by 465
Abstract
While faba bean feeding improves grass carp muscle texture via reactive oxygen species (ROS), the main bioactive compound was unclear. In this study, vicine—a pro-oxidant glycoside—was isolated from faba beans using cation-exchange column chromatography and supplemented into the feed of grass carp at [...] Read more.
While faba bean feeding improves grass carp muscle texture via reactive oxygen species (ROS), the main bioactive compound was unclear. In this study, vicine—a pro-oxidant glycoside—was isolated from faba beans using cation-exchange column chromatography and supplemented into the feed of grass carp at 0.6%. To assess the impact of vicine on muscle texture, the grass carp were fed for 150 days with three treatments: control group, faba bean group, and vicine group. The results showed that vicine improved muscle texture similarly to faba beans but caused fewer adverse effects on muscle, liver, and intestinal health. Vicine improved grass carp muscle texture in the following ways: (1) induced ROS overproduction, activating the Caspase apoptosis pathway and downregulating Pax-7 to promote satellite cell-mediated myofiber regeneration; (2) vicine-mediated intestinal microbiota alterations increased lipopolysaccharide (LPS) levels, indirectly elevating muscle ROS via the gut–muscle axis to further affect muscle structure. This study demonstrated that vicine improved muscle texture by activating ROS-dependent myofiber regeneration but also induced oxidative stress and gut microbiota perturbation. While vicine mitigated the severe toxicity of faba beans, its application requires careful evaluation of its toxicological properties to balance benefits and risks. This study offers new insights for enhancing the quality of aquatic animals. Full article
(This article belongs to the Special Issue The Role of Oxidative Stress in Aquaculture)
Show Figures

Figure 1

13 pages, 1106 KiB  
Article
The Influence of Coagulation on the Fertilizing Properties of Treated Wastewater
by Justyna Czajkowska, Alicja Knap-Bałdyga and Monika Żubrowska-Sudoł
Water 2025, 17(13), 1937; https://doi.org/10.3390/w17131937 - 28 Jun 2025
Viewed by 341
Abstract
Treated wastewater (TW) is a valuable source of water for plant irrigation, helping to protect water resources. However, to use it, a preliminary treatment is necessary, typically involving coagulation to reduce turbidity and then disinfection to ensure microbiological safety. The aim of this [...] Read more.
Treated wastewater (TW) is a valuable source of water for plant irrigation, helping to protect water resources. However, to use it, a preliminary treatment is necessary, typically involving coagulation to reduce turbidity and then disinfection to ensure microbiological safety. The aim of this research was to determine changes in the concentrations of basic fertilizer components (N, P, and K) in TW after the coagulation process. The tests were carried out in three measurement series for volumetric and surface coagulation using three coagulants: Al2(SO4)3, PAX-XL 19F, and PAX-XL 1911. Four doses of aluminum were used for each coagulation method (volumetric coagulation: 1, 2, 4, and 8 mg Al/L; surface coagulation: 0.25, 0.5, 1, and 2 mg Al/L). Studies have shown that despite the reduction in the concentration of nutrients during the coagulation process, the reclaimed water used for grass irrigation would cover the entire K requirement of this plant. In the case of N and P, the demand would be covered by 14.34% and 8.55%, depending on the coagulant used and its dose. It was also documented that the type of coagulant significantly influences the reduction of fertilizing properties during wastewater treatment. PAX-XL19F was found to cause the least reduction in P and K concentrations, while Al2(SO4)3 had the least negative impact on N regardless of coagulation method or dose. Full article
(This article belongs to the Section Wastewater Treatment and Reuse)
Show Figures

Graphical abstract

24 pages, 7732 KiB  
Review
The Morphogenesis, Pathogenesis, and Molecular Regulation of Human Tooth Development—A Histological Review
by Dorin Novacescu, Cristina Stefania Dumitru, Flavia Zara, Marius Raica, Cristian Silviu Suciu, Alina Cristina Barb, Marina Rakitovan, Antonia Armega Anghelescu, Alexandu Cristian Cindrea, Szekely Diana and Pusa Nela Gaje
Int. J. Mol. Sci. 2025, 26(13), 6209; https://doi.org/10.3390/ijms26136209 - 27 Jun 2025
Viewed by 543
Abstract
Odontogenesis, the development of teeth, is a complex, multistage process that unfolds from early embryogenesis through tooth eruption and maturation. It serves as a classical model of organogenesis due to the intricate reciprocal interactions between cranial neural crest-derived mesenchyme and oral epithelium. This [...] Read more.
Odontogenesis, the development of teeth, is a complex, multistage process that unfolds from early embryogenesis through tooth eruption and maturation. It serves as a classical model of organogenesis due to the intricate reciprocal interactions between cranial neural crest-derived mesenchyme and oral epithelium. This narrative review synthesizes current scientific knowledge on human tooth development, tracing the journey from the embryological origins in the first branchial arch to the formation of a fully functional tooth and its supporting structures. Key morphogenetic stages—bud, cap, bell, apposition, and root formation—are described in detail, highlighting the cellular events and histological features characterizing each stage. We discuss the molecular and cellular regulatory networks that orchestrate odontogenesis, including the conserved signaling pathways (Wnt, BMP, FGF, SHH, EDA) and transcription factors (e.g., PAX9, MSX1/2, PITX2) that drive tissue patterning and cell differentiation. The coordinated development of supporting periodontal tissues (cementum, periodontal ligament, alveolar bone, gingiva) is also examined as an integral part of tooth organogenesis. Finally, developmental anomalies (such as variations in tooth number, size, and form) and the fate of residual embryonic epithelial cells are reviewed to underscore the clinical significance of developmental processes. Understanding the normal course of odontogenesis provides crucial insight into congenital dental disorders and lays a foundation for advances in regenerative dental medicine. Full article
Show Figures

Figure 1

17 pages, 5158 KiB  
Article
Centrifugal Pumping Force in Oil Injection-Based TMS to Cool High-Power Aircraft Electric Motors
by Giuseppe Di Lorenzo, Diego Giuseppe Romano, Antonio Carozza and Antonio Pagano
Energies 2025, 18(13), 3390; https://doi.org/10.3390/en18133390 - 27 Jun 2025
Viewed by 318
Abstract
One of the challenges of our age is climate change and the ways in which it affects the Earth’s global ecosystem. To face the problems linked to such an issue, the international community has defined actions aimed at the reduction in greenhouse gas [...] Read more.
One of the challenges of our age is climate change and the ways in which it affects the Earth’s global ecosystem. To face the problems linked to such an issue, the international community has defined actions aimed at the reduction in greenhouse gas emissions in several sectors, including the aviation industry, which has been requested to mitigate its environmental impact. Conventional aircraft propulsion systems depend on fossil fuels, significantly contributing to global carbon emissions. For this reason, innovative propulsion technologies are needed to reduce aviation’s impact on the environment. Electric propulsion has emerged as a promising solution among the several innovative technologies introduced to face climate change challenges. It offers, in fact, a pathway to more sustainable air travel by eliminating direct greenhouse gas emissions, enhancing energy efficiency. Unfortunately, integrating electric motors into aircraft is currently a big challenge, primarily due to thermal management-related issues. Efficient heat dissipation is crucial to maintain optimal performance, reliability, and safety of the electric motor, but aeronautic applications are highly demanding in terms of power, so ad hoc Thermal Management Systems (TMSs) must be developed. The present paper explores the design and optimization of a TMS tailored for a megawatt electric motor in aviation, suitable for regional aircraft (~80 pax). The proposed system relies on coolant oil injected through a hollow shaft and radial tubes to directly reach hot spots and ensure effective heat distribution inside the permanent magnet cavity. The goal of this paper is to demonstrate how advanced TMS strategies can enhance operational efficiency and extend the lifespan of electric motors for aeronautic applications. The effectiveness of the radial tube configuration is assessed by means of advanced Computational Fluid Dynamics (CFD) analysis with the aim of verifying that the proposed design is able to maintain system thermal stability and prevent its overheating. Full article
(This article belongs to the Special Issue Power Electronics Technology and Application)
Show Figures

Figure 1

18 pages, 3115 KiB  
Article
Comparative Analysis of Different Body Composition, Mucus Biochemical Indices, and Body Color in Five Strains of Larimichthys crocea
by Hongjin Deng, Quanyou Guo, Banghong Wei, Jiehui Zhong, Mengyao Zheng, Yao Zheng, Na Lin and Shengyang Zheng
Fishes 2025, 10(7), 305; https://doi.org/10.3390/fishes10070305 - 25 Jun 2025
Viewed by 285
Abstract
The large yellow croaker, or Larimichthys crocea, is highly prized for its golden color and nutritional content. The purpose of this study was to investigate the differences in body composition, mucus biochemical indices and body color in five strains of large yellow [...] Read more.
The large yellow croaker, or Larimichthys crocea, is highly prized for its golden color and nutritional content. The purpose of this study was to investigate the differences in body composition, mucus biochemical indices and body color in five strains of large yellow croakers (body weight: 347.01 ± 5.86 g). To conduct genetic diversity analyses of the populations, a total of 50 tailfin samples were randomly chosen from the following populations of large yellow croakers: wild (LYC1), Dai-qu population (LYC2), Yongdai 1 (LYC3), Min-yuedong population (LYC4), and Fufa 1 (LYC5). The findings demonstrated that the LYC3 group’s pigment contents, crude protein, crude lipid, and chromatic values were comparable to those of the LYC1 group (p > 0.05). There was no significant difference between the LYC1 and LYC5 groups’ mucus superoxide dismutase (SOD) and catalase (CAT) activities (p > 0.05). The alkaline phosphatases (ALP), acid phosphatases (ACP), and lysozyme (LYS) activities of the mucus in the LYC1 group were not significantly different from the LYC3 group (p > 0.05). The back skin mRNA expressions of tyrosinase (tyr), tyrosinase-related protein 1 (tyrp1), dopachrome tautomerase (dct), microphtalmia-associated transcription factor (mitf), and melanocortin 1 receptor (mc1r) were significantly up-regulated in the LYC2 and LYC4 groups compared to the LYC1, LYC3, and LYC5 groups (p < 0.05). Forkhead box d3 (foxd3), paired box 3 (pax3), purine nucleoside phosphorylase 4a (pnp4a), aristaless-like homeobox 4a (alx4a), cAMP dependent protein kinase (pka), anaplastic lymphoma kinase (alk), leukocyte receptor tyrosine kinase (ltk), and colony stimulating factor (fms) were among the mRNA expressions of the abdominal skin in the LYC1, LYC3, and LYC5 groups significantly higher than those in the LYC2 and LYC4 groups (p < 0.05). In conclusion, the LYC3 group’s crude protein, crude lipid, carotenoid, and lutein contents were most similar to those of the large yellow croaker found in the wild. Furthermore, the molecular mechanism underlying the variations in body color among the various strains of large yellow croakers was supplied for additional research. Full article
(This article belongs to the Section Genetics and Biotechnology)
Show Figures

Figure 1

22 pages, 3029 KiB  
Article
Epigenetic Remodeling of Regulatory Regions by Indicaxanthin Suggests a Shift in Cell Identity Programs in Colorectal Cancer Cells
by Maria Antonietta Ragusa, Carla Gentile, Aldo Nicosia, Salvatore Costa, Sara Volpes, Laura Greco, Flores Naselli and Fabio Caradonna
Int. J. Mol. Sci. 2025, 26(13), 6072; https://doi.org/10.3390/ijms26136072 - 24 Jun 2025
Viewed by 368
Abstract
Aberrant DNA methylation is a hallmark of colorectal cancer (CRC), contributing to tumor progression through the silencing of tumor suppressor genes and activation of oncogenes. Indicaxanthin (IND), a dietary betalain pigment from Opuntia ficus indica, has shown antiproliferative effects in CRC models, [...] Read more.
Aberrant DNA methylation is a hallmark of colorectal cancer (CRC), contributing to tumor progression through the silencing of tumor suppressor genes and activation of oncogenes. Indicaxanthin (IND), a dietary betalain pigment from Opuntia ficus indica, has shown antiproliferative effects in CRC models, yet its epigenetic impact remains unexplored. In this study, we investigated the effects of IND on the methylome of Caco-2 cells using Reduced Representation Bisulfite Sequencing (RRBS). IND induced a global hypermethylation profile, particularly at gene promoters and CpG islands. Among the differentially methylated genes, 60% were protein-coding, and 10% encoded transcription factors, including PAX5 and TFAP4, both hypermethylated at active enhancers. Functional enrichment analysis revealed pathways beyond canonical intestinal functions, suggesting altered cell identity and plasticity. Transcription factor targets (SOX10, NFKB1, AHR, ARNT) were significantly enriched among the affected genes, several of which are involved in transdifferentiation processes. Methylation changes also indicated potential reprogramming toward epithelial cell types from pulmonary or neuroectodermal origin. Moreover, IND induced selective hypomethylation of Alu elements on chromosome 21 and hypermethylation of rDNA loci, hinting at suppressed ribosomal biogenesis. Overall, these findings highlight the epigenetic remodeling potential of IND and its possible role in modulating cell fate and metabolism in CRC cells. Full article
(This article belongs to the Special Issue Fundamental and Translational Insights into Colorectal Cancer)
Show Figures

Figure 1

13 pages, 2865 KiB  
Article
Effect of Maternal Hyperglycemia on Fetal Pancreatic Islet Development
by Carina Pereira Dias, Michel Raony Teixeira Paiva de Moraes, Fernanda Angela Correia Barrence, Camila Stephanie Balbino da Silva, Basilio Smuckzec, Fernanda Ortis and Telma Maria Tenório Zorn
Biology 2025, 14(6), 728; https://doi.org/10.3390/biology14060728 - 19 Jun 2025
Viewed by 533
Abstract
Hyperglycemia during fetal development disturbs extracellular matrix (ECM) synthesis and deposition patterns, which disrupts organogenesis and adult organ function. Although the ECM cooperates in pancreas development, little is known about the effects of hyperglycemia on the pancreatic ECM during development. This study investigates [...] Read more.
Hyperglycemia during fetal development disturbs extracellular matrix (ECM) synthesis and deposition patterns, which disrupts organogenesis and adult organ function. Although the ECM cooperates in pancreas development, little is known about the effects of hyperglycemia on the pancreatic ECM during development. This study investigates the effect of severe maternal hyperglycemia on ECM composition and endocrine pancreas development in E19.0 mouse fetuses. Deposition patterns of pan-laminin, laminin (alpha 1 and gamma 1 chains) and integrin alpha 3 were evaluated by immunostaining. The proliferative index of islet cells and alpha and beta cell distribution were evaluated by PCNA, glucagon and insulin immunostaining, respectively. Pdx1 and Pax4 expressions were analyzed by RT-qPCR. While for pan-laminin and laminin (alpha1 and gamma1 chains) deposition was weaker in the endocrine pancreas of hyperglycemic mothers’ fetuses, integrin alpha 3 deposition in the basement membrane was increased. The proliferative index of endocrine cells was lower in the hyperglycemic group, while the beta-cell area was increased. In addition, there was a tendency towards lower Pdx1 and increased Pdx4 expression. These data suggest that maternal hyperglycemia alters fetal endocrine pancreas morphogenesis by modifying peri-islet basement membrane molecule patterns, promoting a decrease in endocrine cell proliferation associated with changes in the expression of important growth factors for the beta cells differentiated and the proliferative state. Full article
(This article belongs to the Section Cell Biology)
Show Figures

Graphical abstract

17 pages, 2154 KiB  
Article
Application of Optical Genome Mapping for the Diagnosis and Risk Stratification of Myeloid and Lymphoid Malignancies
by Lucía Ballesta-Alcaraz, Mónica Bernal, Jose Ramón Vilchez, Jorge Antonio Palacios, Pilar Jiménez, Pilar Garrido, Juan Francisco Gutiérrez-Bautista and Francisco Ruiz-Cabello
Int. J. Mol. Sci. 2025, 26(12), 5763; https://doi.org/10.3390/ijms26125763 - 16 Jun 2025
Viewed by 538
Abstract
Optical genome mapping (OGM) is a novel, high-resolution technology for genome-wide detection of structural variants, offering clear advantages over conventional cytogenetics in hematologic malignancies. We applied OGM to a large cohort of patients with acute myeloid leukemia (AML), myelodysplastic syndromes (MDSs), and B-cell [...] Read more.
Optical genome mapping (OGM) is a novel, high-resolution technology for genome-wide detection of structural variants, offering clear advantages over conventional cytogenetics in hematologic malignancies. We applied OGM to a large cohort of patients with acute myeloid leukemia (AML), myelodysplastic syndromes (MDSs), and B-cell acute lymphoblastic leukemia (B-ALL) to evaluate its clinical utility. In AML and MDS, it revealed high-risk alterations such as deletions in 5q31–5q32 and 7q22, and cryptic fusions like NUP98::NSD1 that were missed by karyotyping or FISH. It also identified chromoanagenesis, a catastrophic chromosomal event linked to poor prognosis and often undetectable by standard methods. In B-ALL, OGM uncovered clinically relevant deletions in CDKN2A/B, PAX5, and IKZF1, as well as high-risk ploidy changes like hypodiploidy and hyperdiploidy, all important for risk assessment and frequently underdetected. OGM not only refines diagnosis and improves risk stratification but can also uncover cryptic and complex genomic abnormalities. Our findings support its integration into routine diagnostics to enhance classification, guide treatment decisions, and improve patient outcomes. Full article
(This article belongs to the Special Issue Molecular Diagnosis and Treatment of Hematological Malignancies)
Show Figures

Figure 1

Back to TopTop