Search Results (339)

This review provides a comprehensive synthesis of phosphorus (P) dynamics relevant to salmonid aquaculture, with a particular focus on Atlantic salmon. It explores the global P cycle, the chemical forms of P in aquatic systems, and the implications of P sourcing, processing, and availability in aquafeeds. The review distinguishes between digestibility and availability of P, summarizes requirement studies, and evaluates the contribution of marine, animal, vegetable, and inorganic sources to dietary P. It also examines how aquaculture system design, particularly recirculating aquaculture systems (RASs), influences P accumulation and emissions. By integrating nutritional, physiological, and environmental perspectives, this review offers a uniquely holistic view of P efficiency and sustainability in salmonid aquaculture. Full article

This study examined the effects of rearing, physiological, and processing conditions on the volatile profile of Atlantic salmon. Fish were reared under two different temperature and light conditions, and three harvests were conducted at different time points for male and female fish. Fish were processed to yield fillets with or without skin. Volatiles were analyzed using SIFT-MS headspace analysis. Atlantic salmon reared in cooler temperatures under a 12 h light/dark cycle exhibited significantly lower concentrations of off-odor volatiles compared to those reared in warm conditions under continuous light, suggesting that cooler temperatures with a dark cycle help maintain freshness. A temperature shift from cool to warm further increased volatile accumulation. Longer rearing time resulted in higher volatile concentrations, attributed to greater biochemical products, increased susceptibility to lipid oxidation, protein degradation, and contaminant accumulation from the rearing environment. Males had higher volatile levels at 202 days, while females surpassed males by 242 days, likely due to increased biochemical accumulation associated with reproductive development. Fillets with skin exhibited significantly higher concentration of off-odor volatiles. These findings highlight the role of all studied factors in establishing optimum conditions to minimize spoilage-related volatiles and preserve the freshness of Atlantic salmon, with rearing temperature being the most critical factor. Full article

Background/Objetives: Sea lice (Caligus rogercresseyi) pose a major threat to Atlantic salmon (Salmo salar) aquaculture by compromising fish health and reducing production efficiency. While genetic variation in parasite load has been reported, the molecular mechanisms underlying this variation remain unclear. Methods: two sea lice challenge trials were conducted, achieving high infestation rates (47.5% and 43.5%). A total of 85 fish, selected based on extreme phenotypes for lice burden (42 low, 43 high), were subjected to transcriptomic analysis. Differential gene expression was integrated with allele-specific expression (ASE) analysis to uncover cis-regulatory variation influencing host response. Results: Sixty genes showed significant ASE (p < 0.05), including 33 overexpressed and 27 underexpressed. Overexpressed ASE genes included Keratin 15, Collagen IV/V, TRIM16, and Angiopoietin-1-like, which are associated with epithelial integrity, immune response, and tissue remodeling. Underexpressed ASE genes such as SOCS3, CSF3R, and Neutrophil cytosolic factor suggest individual variation in cytokine signaling and oxidative stress pathways. Conclusions: several ASE genes co-localized with previously identified QTLs for sea lice resistance, indicating that cis-regulatory variants contribute to phenotypic differences in parasite susceptibility. These results highlight ASE analysis as a powerful tool to identify functional regulatory elements and provide valuable candidates for selective breeding and genomic improvement strategies in aquaculture. Full article

Sea lice have been a persistent pest of the salmon farming industry for more than 50 years. In this study, we aimed to identify if different strains of Atlantic salmon with discrete long-term lice exposure histories had variable resistance to copepodid attachment and/or different attachment-specific transcriptome patterns. We additionally sought to characterize lice distributions on fins, head, and skin and identify if attachment location influenced transcriptomic profiles of lice. Lice counts were correlated with body size and highest on St. John River (SJR; open ocean-run) relative to Grand Lakes Stream (GLS; 200-year restricted ocean-run) or Sebago Lake (CAS; ~11,000 years landlocked) Atlantic salmon. However, lice density was similar between strains. Skin and fins had expectedly different transcriptomic profiles; however, notable differences were not observed between salmon strains. Variance in lice transcriptomes was minimally affected by attachment location even though lice strongly preferred fins relative to head or body. Attached lice did have different transcriptomic profiles on GLS relative to CAS or SJR. This study cumulatively identified a minimal host evolutionary component for sea lice attachment resistance, although lice behavior post-attachment appeared somewhat affected by strain. Non-uniform settlement distributions and tank-specific variability in lice attachment were observed across populations. Full article

Standard blood agar medium with 2% NaCl (BAS) and Marine Agar (MA) are commonly used in bacteriological investigations of winter ulcers in farmed Atlantic salmon (Salmo salar Linnaeus) in Norway and allow easy recovery of Moritella viscosa based on its characteristic viscous colonies and β-hemolytic activity. However, the recent increase in cases of winter ulcers involving Tenacibaculum spp. and the potential emergence of T. maritimum due to rising temperatures highlight the need for improved methods of isolation and identification. Indeed, the recovery of Tenacibaculum spp. from outbreaks of winter ulcers or tenacibaculosis can be challenging. Despite the development of several agar media over the years to overcome this issue, such as Flexibacter maritimus medium (FMM), it remains difficult to differentiate Tenacibaculum species. We evaluated the growth dynamics and phenotypic characteristics of 13 bacterial isolates commonly associated with ulcer outbreaks on five different agar media, including two new formulations: kanamycin-supplemented marine blood agar for the selective isolation of Tenacibaculum spp. (KABAMA) and general blood agar for marine bacteria (BAMA). These new media facilitate the identification of Tenacibaculum spp., including T. maritimum, by distinguishing colonies based on their specific color, shape, and hemolytic activity. Full article

Melanosis, or melanized focal changes (MFCs), is a significant issue in the Atlantic salmon (Salmo salar) farming industry, causing economic losses due to fillet downgrading. Nevertheless, molecular mechanisms underlying melanosis remain poorly understood, particularly in Chilean aquaculture. This study aimed to characterize transcriptional regulation associated with melanogenesis and inflammation in salmon muscle tissues exhibiting melanosis. Samples were collected from fish at three productive stages, all with MFCs in muscle in common: freshwater at two different origins and accumulated thermal units “ATUs” (300 ATUs post-antibiotic overdose, “Security”; 600 ATUs post-vaccination, “Vaccination”) and seawater harvest (“Harvest”). Gene expression analysis by qPCR targeted melanogenesis-related genes (mitf, tyr, and dct) and immune markers (arg2, inos2, and il-1β). Results revealed significant transcriptional modulation in freshwater samples, including downregulation of mitf, upregulation of dct, and changes in immune-related genes (arg2 and inos2). In contrast, seawater (“Harvest”) samples showed significant upregulation of tyr and dct, but no significant immune gene modulation. These findings indicate distinct molecular responses depending on the MFCs’ development stage, emphasizing early stages as critical points for intervention. Unlike recent studies, which have predominantly focused on samples from the harvest stage, this work uniquely integrates results from both the freshwater phase and the harvest stage. Full article

Enzymatic hydrolysis of Atlantic salmon processing discards, including heads and frames, was carried out using Alcalase, Flavourzyme, and their combination. The degree of hydrolysis varied depending on the enzyme and substrate, ranging from approximately 5% to 15%. Alcalase was more effective than Flavourzyme for the hydrolysis of salmon frames and heads. The results also indicated that 1% enzyme concentrations had slightly higher mean DH than 2%. The bioactivity testing indicated that the head hydrolysates had superior DPPH scavenging activity, while frame hydrolysates demonstrated higher ABTS and hydroxyl radical scavenging activity. The correlation between DH and bioactivities indicated that the degree of hydrolysis did not have any significant effect on the DPPH and hydroxyl radical scavenging activities while demonstrating a significant positive correlation against ABTS scavenging activity. Full article

This study investigated the effects of dietary supplementation with the probiotic Pediococcus acidilactici on the reproductive performance and offspring viability of male Atlantic salmon (Salmo salar). A total of 48 mature males were divided into three groups—Group A (control, no probiotic), Group B (60-day supplementation), and Group C (120-day supplementation). The fish were kept in 10 m³ tanks at a constant temperature of 9 °C under a natural photoperiod and evaluated for multiple reproductive and physiological parameters. The results demonstrate that Group C exhibited significantly higher gonad weight, gonadosomatic index (GSI), and sperm concentration than Groups A and B. The blood biochemistry revealed reduced bilirubin and alanine aminotransferase (ALT) levels in Group C; however, values were within normal reference ranges for the species in all groups. While sperm quality parameters such as membrane integrity and motility showed no significant differences, fertility and embryo viability were significantly higher in Group C across all three developmental stages (180, 300, and 380 accumulated thermal units, ATUs). Additionally, Group C showed lower rates of embryonic malformation and mortality at later stages of development. Statistical analyses confirmed a significant interaction between treatment duration and embryo viability, with the 120-day probiotic treatment (Group C) producing the best outcomes. These findings support the hypothesis that P. acidilactici supplementation positively influences male reproductive parameters and improves embryo quality and survival in Atlantic salmon. Full article

Andrographolide, fucoidan, or a combination of both compounds were evaluated to determine their effects on the antiviral response in the Atlantic salmon macrophage-like cell line (SHK-1) infected with infectious pancreatic necrosis virus (IPNV). We assessed the transcript expression levels of key molecules involved in the interferon (IFN)-dependent antiviral response, as well as the viral load in cells treated with these compounds. In non-infected cells, incubation with either fucoidan, andrographolide, or a mixture of both resulted in an increase in the transcript expression of IFNα1 and various interferon-stimulated genes (ISGs). In IPNV-infected cells, treatment with either fucoidan or andrographolide separately did not significantly enhance the antiviral response compared to that of infected cells that had not previously been treated with these compounds. In contrast, the combination of andrographolide and fucoidan led to a marked increase in the transcript expression of viperin and a significant reduction in viral load. Overall, combining andrographolide and fucoidan resulted in a greater reduction in IPNV viral load in infected cells than that noted when the compounds were administered individually. Our findings suggest that pre-incubation with this mixture promotes the establishment of a protective antiviral state against IPNV, likely mediated by an IFN-dependent response. Full article

Routine aquaculture practices such as capture, transportation, and handling can disrupt the relationship between commensal and opportunistic bacteria in the fish skin microbiome. Anesthetic baths are a common welfare practice in aquaculture to reduce stress during handling. However, to date, no studies assessed the effect of anesthetics on bacterial communities in fish skin mucus. This study is the first to evaluate the influence of benzocaine, a widely used anesthetic, on the skin mucus bacterial microbiome of Atlantic salmon reared in a recirculating aquaculture system (RAS). Using Illumina high-throughput 16S rRNA gene sequencing, we found that bacterial richness and diversity were significantly reduced in skin mucus samples from fish with anesthesia (ANE) when compared with those without anesthesia (CTR). The predominant bacterial classes in both groups were Gammaproteobacteria (54.1–62.6%) and Betaproteobacteria (22.6–22.9%). However, significant dissimilarities in beta diversity were observed between the bacterial community structure of salmon skin mucus samples from ANE and CTR. These findings demonstrate that benzocaine exposure alters skin mucus microbiome of Atlantic salmon potentially leading to dysbiosis. This study also provides baseline information on the bacterial communities of Atlantic salmon skin mucus microbiome in an RAS. As no temporal resampling was performed, the duration and persistence of these changes remain unknown and warrant further investigation. Full article

Fish red blood cells (RBCs) are nucleated, transcriptionally active, and key players in both gas transport and immune responses. They are the primary targets of Orthoreovirus piscis (PRV), the etiological agent of heart and skeletal muscle inflammation (HSMI), which includes three genotypes (PRV-1, PRV-2, and PRV-3), linked to circulatory disorders in farmed salmon. In Chile, PRV-3 affects the coho salmon (Oncorhynchus kisutch), but host–pathogen interactions remain poorly characterized. This study compared the interactions of PRV-3 in coho salmon and PRV-1 in Atlantic salmon (Salmo salar) using RBC infection models. RBCs were isolated from healthy juvenile salmon (n = 3) inoculated with either PRV-1 (Ct = 18.87) or PRV-3 (Ct = 21.86). Poly I:C (50 µg/mL) was used as a positive control for the antiviral response. Cells were monitored for up to 14 days post-infection (dpi). PRV-3 infection in coho salmon RBCs caused significant metabolic disruption, apoptosis from 7 dpi, and correlated with increasing viral loads. In contrast, PRV-1 infection in Atlantic salmon RBCs showed limited apoptosis and maintained cell viability. Coho salmon RBCs upregulated rig-i, mx, and pkr transcripts, indicating activation of the type I interferon pathway, whereas Atlantic salmon RBCs exhibited a more attenuated response. PRV-3 induced notable morphological changes in coho salmon RBCs, although neither PRV-3 nor PRV-1 caused hemolysis. These findings highlight species-specific differences in RBC responses to PRV infection and provide new insights into the pathogenesis of PRV-3 and PRV-1. Full article

Aquaculture is currently the fastest-growing sector in animal production, with an average annual growth rate of 7.5% since 1970. In Chile, the industry is largely driven by salmonid farming, with Salmo salar (Atlantic salmon) accounting for over 65% of national production. This species has shown the most significant growth within the sector. This growth is achieved by having high-density farming, which results in high levels of stress due to overcrowding and the appearance of pathogens such as the Infectious Salmon Anemia (ISA) virus, Bacterial Kidney Disease (BKD), Caligus sea lice (Caligus rogercresseyi), and Piscirickettsiosis (SRS) caused by Piscirickettsia salmonis, among others. This study evaluated the toxicity of the two most commonly used antibiotics in the salmon industry—oxytetracycline and florfenicol—at four concentrations each, using primary liver cell cultures of Atlantic salmon (Salmo salar). Oxidative stress was assessed through enzymatic activity and gene expression of oxidative markers, including cytochrome P450, catalase (CAT), superoxide dismutase (SOD), glutathione reductase (GR), and glutathione peroxidase (GPx). Samples were analyzed at 1, 3, 6, 12, and 48 h post-exposure. These findings reveal time- and dose-dependent oxidative responses in salmon liver cells to OTC and FLO, providing critical insights into the sublethal cellular effects of antibiotics commonly used in aquaculture, which indicates the presence of a high amount of free radicals in the liver cells, indicating toxicity of both antibiotics. Full article

Modified atmosphere packaging (MAP) is commonly used to prolong the shelf life and maintain the quality of perishable food. However, it may contribute to more severe juice loss and texture changes in salmon. To explore the reasons why, this study designed different ratios of O₂ (to inhibit anaerobic bacteria), CO₂ (to inhibit Gram-negative bacteria), and N₂ (to maintain the packaging shape) in order to investigate the effects of MAP on the properties, structure, and oxidation of salmon proteins. The experiments’ results showed that MAP with about 60% CO₂ could slow bacterial growth effectively, as well as the accumulation of total volatile basic nitrogen and cooking loss. The carbonyl content decreased with increasing CO₂ contents but increased with high contents of O₂. A low concentration of O₂ (10%) was also beneficial for the inhibition of oxidation and degradation of proteins, and the lowest carbonyl content was found in 60%CO₂/10%O₂/30%N₂ conditions, with 2.01 μmol/g protein on day 12. Overall, we report that MAP with 60%CO₂ and 10%O₂ is properly able to limit structure changes in the myofibrils of salmon fillets during cold storage. Full article

Sustainably farmed Atlantic salmon could drive global food system solutions by contributing essential nutrients to the human diet while delivering high-quality protein. One of the biggest obstacles to sustainable salmon aquaculture in Chile is the prevalence of piscirickettsiosis disease caused by the Gram-negative bacteria Piscirickettsia salmonis and the excessive amount of antibiotics used to eradicate this disease. Farmed salmon products can be consumed without prior processing and therefore present a substantial risk for the transfer of resistant pathogens to humans. Antibiotics also carry the risk of antibiotic residues and damage to the environment. An alternative to antibiotics is the use of natural antimicrobials without the negative influence on the consumer’s microbiome. Here, we evaluate the potential antimicrobial activity against P. salmonis of the marine microalgae Microchloropsis gaditana. A non-genetically modified M. gaditana was grown with nitrogen deprivation to improve the synthesis of the eicosapentaenoic fatty acid (EPA). A spray-dried M. gaditana concentrate (Mg) was elaborated and given to Atlantic salmon for a period of 49 days, and serum and fillet samples were collected. Our results showed a significant increase in the nutritional quality improving the levels of EPA+ Docosapentaenoic acid (DPA) (23%) and Vitamin D₃ (106%) of the fillets treated with Mg. Fish fed serum were challenged with P. salmonis, and serum antibacterial activity was measured. Sera from fish fed Mg-enriched diets showed a significant increase in antibacterial activity (85.68%) against P. salmonis. Our results indicate that Mg can be used as a viable alternative to address the critical problem of microbial resistance and to assure consumers that farm-raised Atlantic salmon is safe. Full article

Robust, healthy, and fast-growing smolt is of high importance for fish farmers as a way of reducing the mortality and production time of Atlantic salmon (Salmo salar) in open sea pens. Lowering the water temperature in flow-through systems (FTSs) compared to recirculating aquaculture systems (RASs) has shown promising results for the growth and health of fish post-transfer to sea; unfortunately, limited information is available on the same parameters in replicated RAS setups. Hence, the current study aimed to compare the performance of Atlantic salmon reared at 12 and 14 °C over a 9-week RAS period and a subsequent 10-week post-transfer period, while also investigating the accumulation pattern of minerals in RASs. The results showed a 100% survival and comparable condition factors and cardiosomatic index (CSI) across both temperatures. During the RAS period, the thermal growth coefficient (TGC) was higher at 12 °C, but body weight gain and feed consumption were lower. No differences in mineral retention or fecal stability were observed. However, the production water accumulated more dissolved phosphorus (DP) and total iron (Fe) at 12 °C. Post-transfer, the TGC remained higher for fish with a rearing history of 12 °C. This fish also had higher body weight gain and feed consumption while exhibiting a lower hepatosomatic index (HSI) and viscerosomatic index (VSI), indicating improved muscle growth. Overall, lower water temperature reduced growth and increased DP and Fe in RASs. However, it improved post-transfer weight gain of muscle tissue, highlighting its benefits for seawater performance. Full article