Search Results (101)

Tomato (Solanum lycopersicum L.) is valued for its versatile consumption and rich nutrients. Current research on functional metabolite distribution in tomatoes mostly focuses on a few varieties, limiting comprehensive understanding across different colored types. This study investigated metabolic characteristics and functional metabolite distribution in colored tomatoes via metabolomic analysis and functional metabolite quantification across diverse germplasm resources. Metabolomic analysis identified 910 metabolites from four colored cherry tomato varieties. Significantly differential metabolite analysis revealed most were flavonoids (27 in total) and alkaloids (14 in total). Additionally, KEGG enrichment analysis identified 4 significantly enriched pathways, mainly related to amino acid biosynthesis, degradation, and metabolism. Quantification across 113 tomato germplasm resources revealed that red tomatoes had higher lycopene; brown tomatoes were rich in lycopene, chlorophyll, and β-carotene; green tomatoes contained higher chlorophyll, saponin, vitamin E, and naringenin. This study provides an important reference for consumers to select colored tomatoes and for breeders to conduct targeted genetic improvement. Full article

Heat-induced β-carotene synthesis in Dunaliella salina typically compromises biomass accumulation, resulting in a biomass–β-carotene trade-off. This study demonstrates that exogenous putrescine (Put) alleviates this conflict through temperature-dependent mechanisms. At 28 °C (optimal for growth), 10⁻⁶ M Put increased biomass by 9.52% and β-carotene yield by 10.72%, probably by accelerating electron transport and relatively mitigating the loss of photosynthetic function. At 34 °C (optimal for β-carotene synthesis), 10⁻⁷ M Put enhanced biomass by 9.68% and β-carotene yield by 35.71% through a process associated with nitric oxide (NO) accumulation, involving antioxidant synergy and controlled reactive oxygen species (ROS) signaling, which activated photoprotective carotenogenesis. At 40 °C (extreme thermal stress), 10⁻⁷ M Put maintained β-carotene levels 44.99% above the control despite a 2.50% biomass reduction, reflecting a shift toward photoprotection via elevated non-photochemical quenching (NPQ) and sustained electron transport beyond photosystem II (δ_RO). Put’s hierarchical modulation of redox homeostasis, photosystem plasticity, and NO signaling underpinned its temperature-dependent efficacy. Peak NO levels correlated with β-carotene yield, while thermodynamic enzyme denaturation at 40 °C limited protection. These findings establish a temperature–concentration framework for Put application that alleviates the biomass–β-carotene trade-off under climate variability. Full article

Cyanidioschyzon merolae, an extremophilic unicellular red alga thriving in acidic hot springs at temperatures of 40–56 °C and pH 0.5–4.0, faces extreme oxidative stress conditions. This study presents a comprehensive genomic analysis of the carotenoid and vitamin E biosynthetic pathways, which are essential for antioxidant defense in this organism. Through comparative genomics using Arabidopsis thaliana sequences as queries, we identified and characterized genes encoding key enzymes involved in their metabolism. Our analysis reveals that C. merolae exclusively utilizes the methylerythritol-4-phosphate (MEP) pathway for isoprenoid biosynthesis and lacks a complete mevalonate (MVA) pathway. We identified eleven genes involved in terpenoid metabolism and seven genes specifically for carotenoid biosynthesis. Pigment analysis confirmed a streamlined carotenoid profile consisting solely of β-carotene, β-cryptoxanthin, and zeaxanthin, lacking the entire β,ε-branch and part of the β,β-branch. The complete tocopherol biosynthetic pathway produces exclusively α-tocopherol. The absence of the β,ε-carotenoid branch and the exclusive production of α-tocopherol demonstrate metabolic streamlining while maintaining antioxidant efficacy. These findings provide molecular blueprints for biotechnological applications, enabling targeted strategies to enhance antioxidant production through pathway optimization and metabolic engineering, while offering insights into developing stress-tolerant organisms and enhancing nutritional content in crops. Full article

Rosa rugosa is an important ornamental and edible species that is valued for its floral colors and essential oils in the cosmetic and pharmaceutical industries. Carotenoids, beyond their health-promoting roles, function as accessory pigments that influence petal coloration, flower quality, and stress responses. However, their accumulation patterns and molecular biosynthesis in R. rugosa remain poorly understood. Here, UPLC-APCI-MS/MS analysis across three developmental stages (bud, semi-open, and full bloom) revealed stage-specific carotenoid accumulation, with phytoene and phytofluene markedly increasing at the semi-open stage. In total, 11 carotenoids were identified, comprising four carotenes and seven xanthophylls. Differential accumulation of metabolites (DAMs) analysis indicated shifts in compounds, including (E/Z)-phytoene, phytofluene, and β-carotene across stages. Genetic complementation assays in Escherichia coli and transient overexpression in rose petals confirmed that RrPSY1 functions as a phytoene synthase. qRT-PCR results showed its upregulation under salt treatment, suggesting a role in enhancing stress tolerance through carotenoid-mediated antioxidant protection. Furthermore, sub-cellular localization experiments confirmed plastid targeting of RrPSY1. Together, these findings clarify the role of RrPSY1 in carotenoid biosynthesis and provide a foundation for future studies on metabolic regulation and biosynthesis of carotenoids in R. rugosa. Full article

Considering the importance of carotenoids in the human diet, their enhancement is a key trait in current breeding programs. This study assessed lutein, zeaxanthin, α-carotene, and β-carotene levels in the flesh of mature fruits from 257 global C. pepo accessions. Lutein and β-carotene were the most prevalent, with top accessions identified for each carotenoid. A panel of 120 accessions with reliable carotenoid contents and genetic diversity was analyzed using 23,111 GBS-generated SNPs in genome-wide association studies (GWAS). Three genomic regions (qtl1, qtl3, and qtl13) on chromosomes 1, 3, and 13 were significantly linked to carotenoid levels, with alternative alleles increasing the carotenoid content, leading to yellowish–orange flesh. Seven candidate genes were identified: CpTIC56, CpHSHP70, and CpPDL8, which regulate carotenoid biosynthesis in chloroplasts; CpSPX and CpPHO1, associated with phosphate homeostasis and carotenoid buildup; CpMYB106, co-expressed with carotenoid biosynthesis genes; and a CpPPR RNA-binding protein. RNA-seq data from yellow- and white-fleshed fruits supported their involvement in carotenoid accumulation. These results improve our understanding of the genetic control of carotenoid buildup in C. pepo fruit, supporting breeding efforts for improved nutritional quality. Full article

Spirulina’s (Arthrospira platensis) use in food applications is limited by its dark color and sulfurous odor. This study aimed to develop a preharvest bioprocessing strategy using Saccharomyces cerevisiae co-cultivation to address these limitations. At a yeast/microalgae biomass ratio of 10:1000 with 5 g/L of glucose supplementation, co-cultivation for 24 h induced a rapid color transition from dark blue–green to light green and imparted “floral–fruity” aromas. Major bioactive compounds, including β-carotene, linoleic acid, and γ-linolenic acid, increased significantly, while volatile sulfur compounds were eliminated. Chlorophyll a and carotenoid contents rose by over two fold, reflecting enhanced photosynthetic efficiency. Mechanistic analyses revealed that yeast-derived acetic acid upregulated genes involved in flavor precursor biosynthesis and promoted biomass accumulation. This strategy integrates sensory improvement with nutritional enhancement, providing a sustainable approach for developing spirulina-based functional foods. Full article

Carotenoid, chlorophyll and tocochromanol biosynthesis and accumulation are interrelated and age-dependent in plants. Model plants produce tocopherols, but do not produce significant amounts of tocotrienols; consequently, the regulation of tocotrienol biosynthesis in plants has been scarcely studied. The Hypericum genus produces a variety of prenyllipids naturally in all parts of the plant, allowing for a glimpse into the relationship between them without genetic or other interference. Consequently, five Hypericum species’ leaves of different ages were investigated—H. androsaemum, H. pseudohenryi, H. hookerianum, H. patulum and one hybrid H. × inodorum (H. androsaemum × H. hircinum). The leaves contained predominantly α-tocopherol, γ-tocotrienol and δ-tocotrienol (30.9–212.8, 8.13–22.43 and 1.87–20.8 mg 100 g⁻¹, respectively). Higher quantities of tocochromanols, a lower chlorophyll content and a higher a/b ratio were observed in the bottom (older) leaves. The predominant carotenoids were lutein (semi-quantitative) and β-carotene (7.60–28.63 and 2.33–12.43 mg 100 g⁻¹, respectively). Carotenoid contents were lower in bottom leaves than in middle or top leaves, and the highest carotenoid content was observed in H. hookerianum and H. patulum. Leaf tocopherol, tocotrienol, chlorophyll and carotenoid accumulation were section and leaf age-dependent, and distinct relationships can be observed between the accumulation of some prenyl lipids, but not others. Full article

The mismatch between the rapid expansion of breeding scale and outdated techniques has hindered the development of the sea cucumber (A. japonicus) industry. Our previous work revealed that ecological seedling breeding can produce red-colored A. japonicus, a phenotype not observed in traditional artificial breeding, where individuals are typically green. To investigate the molecular and genetic basis of this novel red coloration, we compared the growth conditions of red sea cucumbers and green sea cucumbers, as well as the differences in the pigment composition, gene expression and metabolites of their body walls. Red individuals showed higher body length and weight, and elevated levels of astaxanthin, lutein, canthaxanthin, and β-carotene in the body wall. Transcriptomic and metabolomic analyses identified differentially expressed genes and metabolites associated with pigmentation. In particular, FMO2 and WDR18, involved in the cytochrome P450 drug metabolism pathway, were significantly upregulated in red individuals and are known to play roles in pigment biosynthesis and light signal perception. Key metabolites such as astaxanthin and fucoxanthin were implicated in body color formation. Moreover, genes in the arachidonic acid metabolism pathway were highly expressed, suggesting that dietary factors may contribute to pigment synthesis and accumulation. These findings provide novel insights into the mechanisms underlying body color variation in A. japonicus and offer potential for improved breeding strategies. Full article

The aromatic C₁₃ apocarotenoid β-ionone is a high-value natural-flavor and -fragrance compound derived from the oxidative cleavage of carotenoids. Carotenoid cleavage dioxygenases (CCDs) play a pivotal role in the biosynthesis of volatile apocarotenoids, particularly β-ionone. In this study, we report the identification, cloning, and functional characterization of two CCD1 homologs: OeCCD1 from Olea europaea and InCCD1 from Ipomoea nil. These two species, which, respectively, represent a woody perennial and a herbaceous annual, were selected to explore the potential functional divergence of CCD1 enzymes across different plant growth forms. These CCD1 genes were synthesized using codon optimization for Escherichia coli expression, followed by heterologous expression and purification using a GST-fusion system. In vitro assays confirmed that both enzymes cleave β-carotene at the 9,10 (9′,10′) double bond to yield β-ionone, but only OeCCD1 exhibits detectable activity on zeaxanthin; InCCD1 shows no in vitro cleavage of zeaxanthin. Kinetic characterization using β-apo-8′-carotenal as substrate revealed, for OeCCD1, a K_m of 0.82 mM, V_max of 2.30 U/mg (k_cat = 3.35 s⁻¹), and k_cat/K_m of 4.09 mM⁻¹·s⁻¹, whereas InCCD1 displayed K_m = 0.69 mM, V_max = 1.22 U/mg (k_cat = 1.82 s⁻¹), and k_cat/K_m = 2.64 mM⁻¹·s⁻¹. The optimization of expression parameters, as well as the systematic evaluation of temperature, pH, solvent, and metal ion effects, provided further insights into the stability and functional diversity within the plant CCD1 family. Overall, these findings offer promising enzymatic tools for the sustainable production of β-ionone and related apocarotenoids in engineered microbial cell factories. Full article

This study aims to clarify the dose–response relationship between dietary β-carotene levels and gonadal pigment deposition and regulation mechanisms related to the carotenoid synthesis of Strongylocentrotus intermedius based on a 60-day feeding trial and subsequent transcriptome analysis. Adult sea urchins (initial weight: 9.33 ± 0.21 g) of three cages were given one of the dry feeds with different doses of β-carotene (0 mg/kg, 150 mg/kg, 300 mg/kg) or fresh kelp (Saccharina japonica). The results indicated that the weight gain rate (WGR) of sea urchins increased with the addition of β-carotene, with that of the C300 group being markedly higher than that of the C0 group. The addition of β-carotene significantly improved the redness (a*) and yellowness (b*) values of the gonads, with sea urchins in the C300 group exhibiting closest gonad coloration to those in the kelp-fed group. Meanwhile, β-carotene and echinenone in the gonads of the C300 group showed the highest contents, reaching 1.96 μg/kg and 11.97 μg/kg, respectively. Several differential genes, enriched in the pathways of steroid biosynthesis, oxidative phosphorylation, and ubiquitination, were screened based on transcriptome analysis. Real-time PCR further demonstrated that β-carotene significantly upregulated the expression of cholesterol 25-hydroxylase (CH25H), NADH dehydrogenase subunit 1 (ND1), NADH dehydrogenase subunit 2 (ND2), and NADH dehydrogenase subunit 4 (ND4) while it downregulated the expression of 24-dehydrocholesterol reductase (DHCR24). These results showed that 300 mg/kg β-carotene significantly increased the WGR, redness, and yellowness values, as well as the contents of β-carotene and echinenone in the gonads of S. intermedius. On the one hand, dietary β-carotene increased NADH enzyme activity, which participates in echinenone synthesis by donating electrons for the transformation of β-carotene to echinenone synthesis. On the other hand, the addition of β-carotene inhibited cholesterol synthesis by increasing the expression of CH25H and decreasing the expression of DHCR24, which could in turn increase the fluidity and permeability of the cell membranes and the transport efficiency of β-carotene and echinenone from the digestive tract to the gonads. These results provided fundamental insights into the production of sea urchin gonads with market-favored colors. Full article

In this study, pigment-producing yeast (Rhodotorula alborubescens) was isolated from the soil sample, demonstrating the potential for carotenoid biosynthesis. Physiological, morphological, biochemical, and molecular characterization confirmed the identity of the isolate. Optimization of the physical parameters for carotenoid production was achieved through batch shake flask experiments. The optimal conditions were determined to be 84 h of incubation at pH 6.0 and 28 °C under white light irradiation, utilizing the Yeast Peptone Dextrose (YPD) medium composed of 10 g/L yeast extract, 5 g/L of peptone, and 5 g/L dextrose, resulting in maximum carotenoid content. Further, the presence of β-carotene was confirmed using High-Performance Liquid Chromatography and Fourier Transform Infrared Spectroscopy. These findings highlight the potential of the isolated soil yeast (R. alborubescens) as a potential source of carotenoids, offering natural alternatives for various industrial applications. Full article

Microalgae have evolved a diverse carotenoid profile, enabling efficient light harvesting and photoprotection. Previous studies have demonstrated the feasibility of genome editing in the green algal model species Chlamydomonas reinhardtii, leading to significant modifications in carotenoid accumulation. By overexpressing a fully redesigned β-carotene ketolase (bkt), the metabolic pathway of C. reinhardtii was successfully redirected toward astaxanthin biosynthesis, a high-value ketocarotenoid with exceptional antioxidant properties, naturally found in only a few microalgal species. In this study, a tailor-made double knockout targeting lycopene ε-cyclase (LCYE) and zeaxanthin epoxidase (ZEP) was introduced as a background for bkt expression to ensure higher substrate availability for bkt enzyme. The increased zeaxanthin availability resulted in a 2-fold increase in ketocarotenoid accumulation compared to the previously engineered bkt1 or bkt5 strain in the UVM4 background. Specifically, the best Δzl-bkt-expressing lines reached 2.84 mg/L under low light and 2.58 mg/L under high light, compared to 1.74 mg/L and 1.26 mg/L, respectively, in UVM4-bkt strains. These findings highlight the potential of rationally designed microalgal host strains, developed through genome editing, for biotechnological applications and high-value compound production. Full article

Apocarotenoids are ancient signaling molecules that have played crucial roles in biological communication and adaptation across evolutionary history. Originating in cyanobacteria, these molecules have diversified significantly in plants, where they contribute to stress perception, developmental regulation, and environmental responses. While some apocarotenoids, such as abscisic acid (ABA) and strigolactones (SLs), have been formally classified as plant hormones due to the identification of specific receptors, many others remain functionally enigmatic despite their profound effects on gene regulation and plant physiology. In this study, we focus on β-carotene-derived apocarotenoids that lack identified receptors, shedding light on their potential signaling roles beyond traditional hormone pathways. By synthesizing current knowledge, we highlight key gaps in understanding their biosynthesis, transport, perception, and downstream effects. Addressing these gaps is essential for unraveling the full scope of apocarotenoid-mediated signaling networks in plants. A deeper understanding of these molecules could not only redefine plant hormone classification but also open new avenues for improving crop resilience and stress adaptation in the face of climate change. Full article

The increasing use of nanostructured silver-containing inorganic materials raises concerns about their impact on aquatic organisms. This study assessed the toxicity of silver-modified bentonite composites on Chlamydomonas sp. Two materials were tested: silver-exchanged bentonite (Ben-Ag) and its reduced form (Ben-Ag (H₂)).Microalgae were exposed to 0.5 IC₅₀, 1.5 IC₅₀, and 2 IC₅₀. Ben-Ag showed higher toxicity than Ben-Ag (H₂), which even promoted algal growth at low doses. Fluorescence microscopy revealed morphological shrinkage in treated cells. Increased phenol content, elevated malondialdehyde (MDA) levels, and altered antioxidant enzyme activities further confirmed Ben-Ag toxicity, along with reduced growth and photosynthetic pigments. Transcriptomic analysis revealed significant changes in gene expression under Ben-Ag exposure. Genes involved in photosynthesis (petB, psbL), caspase activity (casp), and carotenoid metabolism (Q2CHY) were down-regulated, indicating stress-induced damage. In contrast, genes encoding stress response enzymes (SOD, peroxidase), carbon metabolism enzymes (rbcL, PGQ1), and β-carotene biosynthesis (Q2BKT) were up-regulated, reflecting cellular defense mechanisms. Overall, the study highlights the high toxicity of Ben-Ag to Chlamydomonas sp., emphasizing the importance of evaluating environmental risks before using such materials in aquatic environments. Full article

This study aimed to characterize carotenoid profiles and unravel the genetic mechanisms underlying flesh color variation in white and yellow-fleshed peaches, with a focus on the hybrid cultivar ‘ZY29’ derived from two white-fleshed parents (‘Yulu’ and ‘Hujing Honey Dew’). Using UPLC-APCI-MS/MS, we quantified carotenoids in the pericarp (exocarp) and flesh (mesocarp) of parental and hybrid fruits. Results showed that ‘ZY29’ accumulated significantly higher levels of β-carotene and lutein compared to its white-fleshed parents. Transcriptome analysis revealed upregulation of carotenoid biosynthesis genes (PSY, LCYB, and ZDS) and downregulation of the carotenoid cleavage gene CCD4 in ‘ZY29’, explaining enhanced carotenoid accumulation. Integrative metabolome-transcriptome analysis identified core regulatory networks associated with metabolic shifts, including transcription factors (MYB and WRKY). These findings provide novel insights into the molecular basis of yellow flesh formation in peaches, offering potential targets (PSY and LCYB) and metabolic markers (β-carotene and lutein) for breeding nutritionally enriched cultivars. These findings contribute to a better understanding of the genetic factors and parental regulatory mechanisms involved in the formation of yellow flesh color in peaches. Our results have important implications for breeding new peach varieties with desirable color and nutritional qualities and may provide valuable insights for future research in this area. Full article