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Search Results (1,705)

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Authors = Shan Liu ORCID = 0000-0002-8040-0367

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16 pages, 2097 KiB  
Article
Dual Bioconversion Strategy: Synergistic Germination and Lactobacillus Fermentation Engineering for a γ-Aminobutyric Acid-Enriched Beverage from Brown Rice
by Di Yuan, Shan Zhang, Bin Hong, Shan Shan, Jingyi Zhang, Dixin Sha, Shiwei Gao, Qing Liu, Shuwen Lu and Chuanying Ren
Foods 2025, 14(15), 2733; https://doi.org/10.3390/foods14152733 - 5 Aug 2025
Viewed by 16
Abstract
Growing demand for plant-based nutraceuticals drives the need for innovative bioprocessing strategies. This study developed an integrated approach combining germination and Lactobacillus-mediated fermentation to produce a γ-aminobutyric acid (GABA)-enriched functional beverage from brown rice. Systematic screening identified an optimal rice cultivar for germination. [...] Read more.
Growing demand for plant-based nutraceuticals drives the need for innovative bioprocessing strategies. This study developed an integrated approach combining germination and Lactobacillus-mediated fermentation to produce a γ-aminobutyric acid (GABA)-enriched functional beverage from brown rice. Systematic screening identified an optimal rice cultivar for germination. Sequential enzymatic liquefaction and saccharification were optimized to generate a suitable hydrolysate. Screening of 13 probiotic strains revealed that a 10-strain Lactobacillus–Bifidobacterium consortium maximized GABA synthesis (12.2 mg/100 g). Fermentation parameters were optimized to 0.25% monosodium glutamate, 4% inoculum, 10 μmol/L pyridoxine hydrochloride, 37 °C, and 24 h. The resulting beverage achieved significantly elevated GABA concentrations while exhibiting low fat (0.2 g/100 g), reduced caloric content (233.6 kJ/100 g), and high viable probiotic counts (2 × 108 CFU/g). This strategy demonstrates significant potential for the scalable production of multifunctional, plant-based nutraceuticals with targeted bioactive components. Full article
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20 pages, 4055 KiB  
Article
Biphasic Salt Effects on Lycium ruthenicum Germination and Growth Linked to Carbon Fixation and Photosynthesis Gene Expression
by Xinmeng Qiao, Ruyuan Wang, Lanying Liu, Boya Cui, Xinrui Zhao, Min Yin, Pirui Li, Xu Feng and Yu Shan
Int. J. Mol. Sci. 2025, 26(15), 7537; https://doi.org/10.3390/ijms26157537 - 4 Aug 2025
Viewed by 166
Abstract
Since the onset of industrialization, the safety of arable land has become a pressing global concern, with soil salinization emerging as a critical threat to agricultural productivity and food security. To address this challenge, the cultivation of economically valuable salt-tolerant plants has been [...] Read more.
Since the onset of industrialization, the safety of arable land has become a pressing global concern, with soil salinization emerging as a critical threat to agricultural productivity and food security. To address this challenge, the cultivation of economically valuable salt-tolerant plants has been proposed as a viable strategy. In the study, we investigated the physiological and molecular responses of Lycium ruthenicum Murr. to varying NaCl concentrations. Results revealed a concentration-dependent dual effect: low NaCl levels significantly promoted seed germination, while high concentrations exerted strong inhibitory effects. To elucidate the mechanisms underlying these divergent responses, a combined analysis of metabolomics and transcriptomics was applied to identify key metabolic pathways and genes. Notably, salt stress enhanced photosynthetic efficiency through coordinated modulation of ribulose 5-phosphate and erythrose-4-phosphate levels, coupled with the upregulation of critical genes encoding RPIA (Ribose 5-phosphate isomerase A) and RuBisCO (Ribulose-1,5-bisphosphate carboxylase/oxygenase). Under low salt stress, L. ruthenicum maintained intact cellular membrane structures and minimized oxidative damage, thereby supporting germination and early growth. In contrast, high salinity severely disrupted PS I (Photosynthesis system I) functionality, blocking energy flow into this pathway while simultaneously inducing membrane lipid peroxidation and triggering pronounced cellular degradation. This ultimately suppressed seed germination rates and impaired root elongation. These findings suggested a mechanistic framework for understanding L. ruthenicum adaptation under salt stress and pointed out a new way for breeding salt-tolerant crops and understanding the mechanism. Full article
(This article belongs to the Section Molecular Biology)
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22 pages, 3275 KiB  
Article
Research on Q-Learning-Based Cooperative Optimization Methodology for Dynamic Task Scheduling and Energy Consumption in Underwater Pan-Tilt Systems
by Shan Tao, Lei Yang, Xiaobo Zhang, Shengya Zhao, Kun Liu, Xinran Tian and Hengxin Xu
Sensors 2025, 25(15), 4785; https://doi.org/10.3390/s25154785 - 3 Aug 2025
Viewed by 285
Abstract
Given the harsh working conditions of underwater pan-tilt systems, their energy consumption management is particularly crucial. This study proposes an underwater pan-tilt operation method with an automatic wake-up mechanism, which activates only upon target detection, replacing conventional timer-based triggering. Furthermore, departing from fixed-duration [...] Read more.
Given the harsh working conditions of underwater pan-tilt systems, their energy consumption management is particularly crucial. This study proposes an underwater pan-tilt operation method with an automatic wake-up mechanism, which activates only upon target detection, replacing conventional timer-based triggering. Furthermore, departing from fixed-duration observation strategies, we introduce a Q-learning algorithm to optimize operational modes. The algorithm dynamically adjusts working modes based on surrounding biological activity frequency: employing a low-power mode (reduced energy consumption with lower monitoring intensity) during periods of sparse biological presence and switching to a high-performance mode (extended observation duration, higher energy consumption, and enhanced monitoring intensity) during frequent biological activity. Simulation results demonstrate that compared to fixed-duration observation schemes, the proposed optimization strategy achieves a 11.11% improvement in monitoring effectiveness while achieving 16.21% energy savings. Full article
(This article belongs to the Section Intelligent Sensors)
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17 pages, 5591 KiB  
Article
Pharmacological Investigation of Tongqiao Jiuxin Oil Against High-Altitude Hypoxia: Integrating Chemical Profiling, Network Pharmacology, and Experimental Validation
by Jiamei Xie, Yang Yang, Yuhang Du, Xiaohua Su, Yige Zhao, Yongcheng An, Xin Mao, Menglu Wang, Ziyi Shan, Zhiyun Huang, Shuchang Liu and Baosheng Zhao
Pharmaceuticals 2025, 18(8), 1153; https://doi.org/10.3390/ph18081153 - 2 Aug 2025
Viewed by 240
Abstract
Background: Acute mountain sickness (AMS) is a prevalent and potentially life-threatening condition caused by rapid exposure to high-altitude hypoxia, affecting pulmonary and neurological functions. Tongqiao Jiuxin Oil (TQ), a traditional Chinese medicine formula composed of aromatic and resinous ingredients such as sandalwood, [...] Read more.
Background: Acute mountain sickness (AMS) is a prevalent and potentially life-threatening condition caused by rapid exposure to high-altitude hypoxia, affecting pulmonary and neurological functions. Tongqiao Jiuxin Oil (TQ), a traditional Chinese medicine formula composed of aromatic and resinous ingredients such as sandalwood, agarwood, frankincense, borneol, and musk, has been widely used in the treatment of cardiovascular and cerebrovascular disorders. Clinical observations suggest its potential efficacy against AMS, yet its pharmacological mechanisms remain poorly understood. Methods: The chemical profile of TQ was characterized using UHPLC-Q-Exactive Orbitrap HRMS. Network pharmacology was applied to predict the potential targets and pathways involved in AMS. A rat model of AMS was established by exposing animals to hypobaric hypoxia (~10% oxygen), simulating an altitude of approximately 5500 m. TQ was administered at varying doses. Physiological indices, oxidative stress markers (MDA, SOD, GSH), histopathological changes, and the expression of hypoxia- and apoptosis-related proteins (HIF-1α, VEGFA, EPO, Bax, Bcl-2, Caspase-3) in lung and brain tissues were assessed. Results: A total of 774 chemical constituents were identified from TQ. Network pharmacology predicted the involvement of multiple targets and pathways. TQ significantly improved arterial oxygenation and reduced histopathological damage in both lung and brain tissues. It enhanced antioxidant activity by elevating SOD and GSH levels and reducing MDA content. Mechanistically, TQ downregulated the expression of HIF-1α, VEGFA, EPO, and pro-apoptotic markers (Bax/Bcl-2 ratio, Caspase-3), while upregulated Bcl-2, the anti-apoptotic protein expression. Conclusions: TQ exerts protective effects against AMS-induced tissue injury by improving oxygen homeostasis, alleviating oxidative stress, and modulating hypoxia-related and apoptotic signaling pathways. This study provides pharmacological evidence supporting the potential of TQ as a promising candidate for AMS intervention, as well as the modern research method for multi-component traditional Chinese medicine. Full article
(This article belongs to the Section Pharmacology)
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21 pages, 4314 KiB  
Article
Panoptic Plant Recognition in 3D Point Clouds: A Dual-Representation Learning Approach with the PP3D Dataset
by Lin Zhao, Sheng Wu, Jiahao Fu, Shilin Fang, Shan Liu and Tengping Jiang
Remote Sens. 2025, 17(15), 2673; https://doi.org/10.3390/rs17152673 - 2 Aug 2025
Viewed by 236
Abstract
The advancement of Artificial Intelligence (AI) has significantly accelerated progress across various research domains, with growing interest in plant science due to its substantial economic potential. However, the integration of AI with digital vegetation analysis remains underexplored, largely due to the absence of [...] Read more.
The advancement of Artificial Intelligence (AI) has significantly accelerated progress across various research domains, with growing interest in plant science due to its substantial economic potential. However, the integration of AI with digital vegetation analysis remains underexplored, largely due to the absence of large-scale, real-world plant datasets, which are crucial for advancing this field. To address this gap, we introduce the PP3D dataset—a meticulously labeled collection of about 500 potted plants represented as 3D point clouds, featuring fine-grained annotations for approximately 20 species. The PP3D dataset provides 3D phenotypic data for about 20 plant species spanning model organisms (e.g., Arabidopsis thaliana), potted plants (e.g., Foliage plants, Flowering plants), and horticultural plants (e.g., Solanum lycopersicum), covering most of the common important plant species. Leveraging this dataset, we propose the panoptic plant recognition task, which combines semantic segmentation (stems and leaves) with leaf instance segmentation. To tackle this challenge, we present SCNet, a novel dual-representation learning network designed specifically for plant point cloud segmentation. SCNet integrates two key branches: a cylindrical feature extraction branch for robust spatial encoding and a sequential slice feature extraction branch for detailed structural analysis. By efficiently propagating features between these representations, SCNet achieves superior flexibility and computational efficiency, establishing a new baseline for panoptic plant recognition and paving the way for future AI-driven research in plant science. Full article
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23 pages, 3580 KiB  
Article
Distributed Collaborative Data Processing Framework for Unmanned Platforms Based on Federated Edge Intelligence
by Siyang Liu, Nanliang Shan, Xianqiang Bao and Xinghua Xu
Sensors 2025, 25(15), 4752; https://doi.org/10.3390/s25154752 - 1 Aug 2025
Viewed by 321
Abstract
Unmanned platforms such as unmanned aerial vehicles, unmanned ground vehicles, and autonomous underwater vehicles often face challenges of data, device, and model heterogeneity when performing collaborative data processing tasks. Existing research does not simultaneously address issues from these three aspects. To address this [...] Read more.
Unmanned platforms such as unmanned aerial vehicles, unmanned ground vehicles, and autonomous underwater vehicles often face challenges of data, device, and model heterogeneity when performing collaborative data processing tasks. Existing research does not simultaneously address issues from these three aspects. To address this issue, this study designs an unmanned platform cluster architecture inspired by the cloud-edge-end model. This architecture integrates federated learning for privacy protection, leverages the advantages of distributed model training, and utilizes edge computing’s near-source data processing capabilities. Additionally, this paper proposes a federated edge intelligence method (DSIA-FEI), which comprises two key components. Based on traditional federated learning, a data sharing mechanism is introduced, in which data is extracted from edge-side platforms and placed into a data sharing platform to form a public dataset. At the beginning of model training, random sampling is conducted from the public dataset and distributed to each unmanned platform, so as to mitigate the impact of data distribution heterogeneity and class imbalance during collaborative data processing in unmanned platforms. Moreover, an intelligent model aggregation strategy based on similarity measurement and loss gradient is developed. This strategy maps heterogeneous model parameters to a unified space via hierarchical parameter alignment, and evaluates the similarity between local and global models of edge devices in real-time, along with the loss gradient, to select the optimal model for global aggregation, reducing the influence of device and model heterogeneity on cooperative learning of unmanned platform swarms. This study carried out extensive validation on multiple datasets, and the experimental results showed that the accuracy of the DSIA-FEI proposed in this paper reaches 0.91, 0.91, 0.88, and 0.87 on the FEMNIST, FEAIR, EuroSAT, and RSSCN7 datasets, respectively, which is more than 10% higher than the baseline method. In addition, the number of communication rounds is reduced by more than 40%, which is better than the existing mainstream methods, and the effectiveness of the proposed method is verified. Full article
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19 pages, 8583 KiB  
Article
Development and Immunogenic Evaluation of a Recombinant Vesicular Stomatitis Virus Expressing Nipah Virus F and G Glycoproteins
by Huijuan Guo, Renqiang Liu, Dan Pan, Yijing Dang, Shuhuai Meng, Dan Shan, Xijun Wang, Jinying Ge, Zhigao Bu and Zhiyuan Wen
Viruses 2025, 17(8), 1070; https://doi.org/10.3390/v17081070 - 31 Jul 2025
Viewed by 307
Abstract
Nipah virus (NiV) is a highly pathogenic bat-borne zoonotic pathogen that poses a significant threat to human and animal health, with fatality rates exceeding 70% in some outbreaks. Despite its significant public health impact, there are currently no licensed vaccines or specific therapeutics [...] Read more.
Nipah virus (NiV) is a highly pathogenic bat-borne zoonotic pathogen that poses a significant threat to human and animal health, with fatality rates exceeding 70% in some outbreaks. Despite its significant public health impact, there are currently no licensed vaccines or specific therapeutics available. Various virological tools—such as reverse genetics systems, replicon particles, VSV-based pseudoviruses, and recombinant Cedar virus chimeras—have been widely used to study the molecular mechanisms of NiV and to support vaccine development. Building upon these platforms, we developed a replication-competent recombinant vesicular stomatitis virus (rVSVΔG-eGFP-NiVBD F/G) expressing NiV attachment (G) and fusion (F) glycoproteins. This recombinant virus serves as a valuable tool for investigating NiV entry mechanisms, cellular tropism, and immunogenicity. The virus was generated by replacing the VSV G protein with NiV F/G through reverse genetics, and protein incorporation was confirmed via immunofluorescence and electron microscopy. In vitro, the virus exhibited robust replication, characteristic cell tropism, and high viral titers in multiple cell lines. Neutralization assays showed that monoclonal antibodies HENV-26 and HENV-32 effectively neutralized the recombinant virus. Furthermore, immunization of golden hamsters with inactivated rVSVΔG-eGFP-NiVBD F/G induced potent neutralizing antibody responses, demonstrating its robust immunogenicity. These findings highlight rVSVΔG-eGFP-NiVBD F/G as an effective platform for NiV research and vaccine development. Full article
(This article belongs to the Section Animal Viruses)
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18 pages, 1597 KiB  
Article
Influence Mechanism of Coexisting Ions on the Extraction Efficiency of Lithium from Oil and Gas Field Water
by Qiaoli Shan, Guocheng Zhu, Pengjun Fan, Mengyu Liang, Xin Zhang, Jie Liu and Guizhi Wu
Water 2025, 17(15), 2258; https://doi.org/10.3390/w17152258 - 29 Jul 2025
Viewed by 130
Abstract
Oil and gas field water not only contains low concentrations of lithium but also a lot of suspended matter, inorganic salt, and organic matter. Both inorganic ions and organic substances influence the extraction of lithium. To improve the extraction efficiency of low-concentration lithium [...] Read more.
Oil and gas field water not only contains low concentrations of lithium but also a lot of suspended matter, inorganic salt, and organic matter. Both inorganic ions and organic substances influence the extraction of lithium. To improve the extraction efficiency of low-concentration lithium in oil and gas field water, the effects of Na+, K+, Ca2+, Mg2+, Cl, Br, SO42−, NO3, and organic substances on the extraction efficiency of lithium were studied. The results showed that Na+ can promote the extraction of lithium to a certain extent, and lithium ions competed with K+ for extraction; however, the separation coefficient remained more than 13. Ca2+ and Mg2+ have a significant influence on the extraction of lithium and should be removed prior to extraction. Cl, SO42−, and NO3 have little influence on the extraction solution of lithium. Among the organic components, a high concentration of long-chain alkane has a certain effect on the extraction efficiency of lithium, while other substances have little effect. On this basis, the first step for precipitating impurity ions and the second step for solvent extraction of lithium were established. After removing the impurity ions, the extraction efficiency of lithium can reach over 90%. Taking 15L of oil and gas field water as the research object, after extraction, back extraction, concentration, depth impurities removal by extraction, and precipitation drying, the purity of the lithium carbonate product can be achieved at 99.28%. This study can provide technical support for the efficient extraction of low-concentration lithium from oil and gas field water. Full article
(This article belongs to the Special Issue Science and Technology for Water Purification, 2nd Edition)
11 pages, 768 KiB  
Article
The Efficacy and Central Remodeling Mechanism of a Composite TMS Pattern in First-Episode and Recurrent Depressive Disorders
by Li Pu, Jiang Wu, Shan Huang, Dandan Liu, Xi Tan, Hongmei Yan, Guojian Yan and Dezhong Yao
Brain Sci. 2025, 15(8), 801; https://doi.org/10.3390/brainsci15080801 - 28 Jul 2025
Viewed by 589
Abstract
Background: This study aims to evaluate the efficacy of a combined transcranial magnetic stimulation (TMS) protocol incorporating intermittent theta burst stimulation (iTBS) and low-frequency TMS in adults diagnosed with first-episode and recurrent depressive disorders. Methods: A prospective, double-blind, parallel-group trial was conducted involving [...] Read more.
Background: This study aims to evaluate the efficacy of a combined transcranial magnetic stimulation (TMS) protocol incorporating intermittent theta burst stimulation (iTBS) and low-frequency TMS in adults diagnosed with first-episode and recurrent depressive disorders. Methods: A prospective, double-blind, parallel-group trial was conducted involving 42 participants (21 with first-episode depressive disorder and 21 with recurrent depressive disorder) recruited from Chengdu, China. All subjects received 10 sessions of TMS over two weeks. The primary outcome measure was suicidal ideation, assessed using the Beck scale for suicide ideation. Secondary outcomes included sleep quality, depressive symptoms, anhedonia, and cognitive function. Event-related potentials (ERPs) were also recorded. Data were analyzed using SPSS V.21.0, with statistical significance defined as p < 0.05. Results: Both patient groups exhibited significant reductions in suicidal ideation following the composite TMS intervention. Secondary outcomes showed significant improvements in sleep quality, overall depressive symptoms, anhedonia, and cognitive function. Notably, a significant association was found between improvements in sleep quality and depressive symptoms in the first-episode group, suggesting differential underlying mechanisms compared to recurrent depression. Limitations: The relatively short intervention and follow-up period limits the ability to assess the long-term sustainability of the observed benefits. Future studies with extended follow-up periods are warranted to evaluate the persistence of TMS effects and the potential need for maintenance sessions. Conclusions: The combined protocol of iTBS and low-frequency TMS effectively reduces suicidal ideation and improves various clinical outcomes in both first-episode and recurrent depressive disorders, indicating the effectiveness of the physical intervention, especially for the first-episode patients. These findings underscore the importance of personalized treatment strategies based on the clinical history of depressive episodes. Further research with longer follow-up periods is warranted to assess the long-term sustainability of TMS effects. Full article
(This article belongs to the Special Issue Anxiety, Depression and Stress)
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15 pages, 1671 KiB  
Article
Study on Critical Gas Flow Velocity to Prevent Sulfur Particle Deposition in Vertical Wells Considering Adhesive Forces
by Lianjin Zhang, Dong Hui, Tao Li, Wei Liu, Ruiduo Zhang, Mengfei Zhou and Shan Yuan
Processes 2025, 13(8), 2380; https://doi.org/10.3390/pr13082380 - 27 Jul 2025
Viewed by 276
Abstract
Sulfur particle deposition and wellbore blockage significantly hinder the productivity of high-sulfur gas wells, necessitating accurate prediction of the critical gas flow velocity to prevent deposition. This study presents a comprehensive force-based model to determine the critical gas flow velocity in vertical wells, [...] Read more.
Sulfur particle deposition and wellbore blockage significantly hinder the productivity of high-sulfur gas wells, necessitating accurate prediction of the critical gas flow velocity to prevent deposition. This study presents a comprehensive force-based model to determine the critical gas flow velocity in vertical wells, explicitly incorporating adhesion, boundary layer effects, and particle detachment mechanisms. Through detailed analysis, the forces acting on sulfur particles of varying sizes and flow velocities, as well as the key factors influencing the critical gas flow velocity, were examined. The results demonstrated strong agreement with the experimental data, with a mean absolute percentage error of 6%, while revealing significant deviations from the conventional critical gas suspension velocity, validating the model’s enhanced accuracy and its necessity. This study identified adhesive forces as dominant for small particles (<100 µm) at low velocities (≤10 m/s), whereas gravitational and inertial forces prevailed for larger particles. Key parameters such as the particle size, sphericity, Hamaker constant, friction coefficient, and rolling arm length ratio critically influenced the deposition velocity and detachment mechanisms. These findings provide fundamental insights into sulfur deposition dynamics and establish a scientific basis for optimizing wellbore operations to mitigate sulfur accumulation and improve production efficiency in high-sulfur gas wells. Full article
(This article belongs to the Topic Petroleum and Gas Engineering, 2nd edition)
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19 pages, 4407 KiB  
Article
Mitochondrial Genome of Scutiger ningshanensis (Anura, Megophryidae, Scutiger): Insights into the Characteristics of the Mitogenome and the Phylogenetic Relationships of Megophryidae Species
by Siqi Shan, Simin Chen, Chengmin Li, Lingyu Peng, Dongmei Zhao, Yaqing Liao, Peng Liu and Lichun Jiang
Genes 2025, 16(8), 879; https://doi.org/10.3390/genes16080879 - 26 Jul 2025
Viewed by 326
Abstract
Background/Objectives: Scutiger ningshanensis (Fang, 1985) is an endemic Chinese amphibian species within the genus Scutiger (Megophryidae). Despite its ecological significance, its mitochondrial genome architecture and evolutionary relationships remain poorly understood. Given the high structural variability in Megophryidae mitogenomes and unresolved phylogenetic patterns [...] Read more.
Background/Objectives: Scutiger ningshanensis (Fang, 1985) is an endemic Chinese amphibian species within the genus Scutiger (Megophryidae). Despite its ecological significance, its mitochondrial genome architecture and evolutionary relationships remain poorly understood. Given the high structural variability in Megophryidae mitogenomes and unresolved phylogenetic patterns in Scutiger, this study aims to (1) characterize the complete mitogenome of S. ningshanensis, (2) analyze its molecular evolution, and (3) clarify its phylogenetic position and divergence history within Megophryidae. Methods: The complete mitochondrial genome was sequenced and annotated, followed by analyses of nucleotide composition, codon usage bias, and selection pressures (Ka/Ks ratios). Secondary structures of rRNAs and tRNAs were predicted, and phylogenetic relationships were reconstructed using maximum likelihood and Bayesian methods. Divergence times were estimated using molecular clock analysis. Results: The mitogenome of S. ningshanensis is 17,282 bp long, encoding 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, and a control region, with a notable AT bias (61.05%) with nucleotide compositions of T (32.51%), C (24.64%), G (14.3%), and A (28.54%). All tRNAs exhibited cloverleaf structures except trnS1, which lacked a DHU stem. Phylogenetic analysis confirmed the monophyly of Scutiger, forming a sister clade to Oreolalax and Leptobrachium, and that S. ningshanensis and S. liubanensis are sister species with a close evolutionary relationship. Positive selection was detected in Atp8 (Ka/Ks > 1), suggesting adaptation to plateau environments, while other PCGs underwent purifying selection (Ka/Ks < 1). Divergence time estimation placed the origin of Megophryidae at~47.97 MYA (Eocene), with S. ningshanensis diverging~32.67 MYA (Oligocene). Conclusions: This study provides the first comprehensive mitogenomic characterization of S. ningshanensis, revealing its evolutionary adaptations and phylogenetic placement. The findings enhance our understanding of Megophryidae’s diversification and offer a genomic foundation for future taxonomic and conservation studies. Full article
(This article belongs to the Section Cytogenomics)
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18 pages, 4202 KiB  
Article
Genetic Impacts of Sustained Stock Enhancement on Wild Populations: A Case Study of Penaeus penicillatus in the Beibu Gulf, China
by Yaxuan Wu, Dianrong Sun, Liangming Wang, Yan Liu, Changping Yang, Manting Liu, Qijian Xie, Cheng Chen, Jianwei Zou, Dajuan Zhang and Binbin Shan
Diversity 2025, 17(8), 511; https://doi.org/10.3390/d17080511 - 24 Jul 2025
Viewed by 186
Abstract
In recent decades, fishery stock enhancement has been increasingly utilized as a restoration tool to mitigate population declines and enhance the resilience of marine fisheries. Nevertheless, persistent enhancement efforts risk eroding the evolutionary potential of wild populations via genetic homogenization and maladaptive gene [...] Read more.
In recent decades, fishery stock enhancement has been increasingly utilized as a restoration tool to mitigate population declines and enhance the resilience of marine fisheries. Nevertheless, persistent enhancement efforts risk eroding the evolutionary potential of wild populations via genetic homogenization and maladaptive gene flow. Using long-term monitoring data (2017–2023), we quantified the effects of large-scale Penaeus penicillatus stock enhancement (~108 juveniles/yr) on wild population dynamics and genetic integrity in the Beibu Gulf ecosystem. Temporal genetic changes were assessed using eight highly polymorphic microsatellite loci, comparing founder (2017) and enhanced (2024) populations to quantify stocking impacts. Insignificantly lower expected heterozygosity was observed in the stocked population (He = 0.60, 2024) relative to natural populations (He = 0.62–0.66; p > 0.1), indicating genetic dilution effects from enhancement activities. No significant erosion of genetic diversity was detected post-enhancement, suggesting current stocking practices maintain short-term population genetic integrity. Despite conserved heterozygosity, pairwise Fst analysis detected significant genetic shifts between temporal cohorts (pre-enhancement—2017 vs. post-enhancement—2024; Fst = 0.25, p < 0.05), demonstrating stocking-induced population restructuring. Genetic connectivity analysis revealed that while the enhanced Beihai population (A-BH) maintained predominant self-recruitment (>90%), it experienced substantial stocking-derived gene flow (17% SW → A-BH). The post-stocking period showed both reduced genetic exchange with adjacent populations and increased asymmetric dispersal from A-BH (e.g., 5% to YJ), indicating that hatchery releases simultaneously enhanced population isolation while altering regional genetic structure. Our findings revealed the paradoxical dual effects of stock enhancement and allelic diversity while disrupting natural genetic architecture. This underscores the need for evolutionary-impact assessments in marine resource management. Full article
(This article belongs to the Special Issue Ecological Dynamics and Conservation of Marine Fisheries)
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40 pages, 50537 KiB  
Article
Newly Formulated General Solutions for the Navier Equation in Linear Elasticity
by Chein-Shan Liu and Chung-Lun Kuo
Mathematics 2025, 13(15), 2373; https://doi.org/10.3390/math13152373 - 24 Jul 2025
Viewed by 161
Abstract
The Navier equations are reformulated to be third-order partial differential equations. New anti-Cauchy-Riemann equations can express a general solution in 2D space for incompressible materials. Based on the third-order solutions in 3D space and the Boussinesq–Galerkin method, a third-order method of fundamental solutions [...] Read more.
The Navier equations are reformulated to be third-order partial differential equations. New anti-Cauchy-Riemann equations can express a general solution in 2D space for incompressible materials. Based on the third-order solutions in 3D space and the Boussinesq–Galerkin method, a third-order method of fundamental solutions (MFS) is developed. For the 3D Navier equation in linear elasticity, we present three new general solutions, which have appeared in the literature for the first time, to signify the theoretical contributions of the present paper. The first one is in terms of a biharmonic function and a harmonic function. The completeness of the proposed general solution is proven by using the solvability conditions of the equations obtained by equating the proposed general solution to the Boussinesq–Galerkin solution. The second general solution is expressed in terms of a harmonic vector, which is simpler than the Slobodianskii general solution, and the traditional MFS. The main achievement is that the general solution is complete, and the number of harmonic functions, three, is minimal. The third general solution is presented by a harmonic vector and a biharmonic vector, which are subjected to a constraint equation. We derive a specific solution by setting the two vectors in the third general solution as the vectorizations of a single harmonic potential. Hence, we have a simple approach to the Slobodianskii general solution. The applications of the new solutions are demonstrated. Owing to the minimality of the harmonic functions, the resulting bases generated from the new general solution are complete and linearly independent. Numerical instability can be avoided by using the new bases. To explore the efficiency and accuracy of the proposed MFS variant methods, some examples are tested. Full article
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15 pages, 9497 KiB  
Article
Tapered Quantum Cascade Laser Achieving Low Divergence Angle and High Output Power
by Zizhuo Liu, Hongxiao Li, Jiagang Chen, Anlan Chen, Shan Niu, Changlei Wu, Yongqiang Sun, Xingli Zhong, Hui Su, Hao Xu, Jinchuan Zhang, Jiang Wu and Fengqi Liu
Sensors 2025, 25(15), 4572; https://doi.org/10.3390/s25154572 - 24 Jul 2025
Viewed by 292
Abstract
In this work, we present a high-performance tapered quantum cascade laser (QCL) designed to achieve both high output power and low divergence angle. By integrating a tapered waveguide with a Fabry–Perot structure, significant improvements of tapered QCL devices in both output power and [...] Read more.
In this work, we present a high-performance tapered quantum cascade laser (QCL) designed to achieve both high output power and low divergence angle. By integrating a tapered waveguide with a Fabry–Perot structure, significant improvements of tapered QCL devices in both output power and beam quality are demonstrated. The optimized 50 µm wide tapered QCL achieved a maximum output power of 2.76 W in pulsed operation with a slope efficiency of 3.52 W/A and a wall-plug efficiency (WPE) of 16.2%, while reducing the divergence angle to 13.01°. The device maintained a maximum power of 1.34 W with a WPE exceeding 8.2%, measured under room temperature and continuous wave (CW) operation. Compared to non-tapered Fabry–Perot QCLs, the tapered devices exhibited a nearly 10-fold increase in output power and over 200% improvement in WPE. This work provides a promising pathway for advancing mid-infrared laser technology, particularly for applications requiring high power, low divergence, and temperature stability. Full article
(This article belongs to the Special Issue Recent Trends in Quantum Sensing)
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21 pages, 9690 KiB  
Article
Comparative Transcriptomic Analysis for Identification of Environmental-Responsive Genes in Seven Species of Threadfin Breams (Nemipterus)
by Zhaoke Dang, Qiaer Wu, Yanbo Zhou, Liangming Wang, Yan Liu, Changping Yang, Manting Liu, Qijian Xie, Cheng Chen, Shengwei Ma and Binbin Shan
Int. J. Mol. Sci. 2025, 26(15), 7118; https://doi.org/10.3390/ijms26157118 - 23 Jul 2025
Viewed by 253
Abstract
Members of the genus Nemipterus are economically important fish species distributed in the tropical and subtropical Indo-West Pacific region. The majority of species in this genus inhabit waters with sandy–muddy substrates on the continental shelf, although different species are found at slightly varying [...] Read more.
Members of the genus Nemipterus are economically important fish species distributed in the tropical and subtropical Indo-West Pacific region. The majority of species in this genus inhabit waters with sandy–muddy substrates on the continental shelf, although different species are found at slightly varying water depths. In this study, we sequenced seven species within the genus Nemipterus after identifying the specimens using complementary morphological analysis and DNA barcoding. Each species yielded over 40,000,000 clean reads, totaling over 300,000,000 clean reads across the seven species. A total of 276,389 unigenes were obtained after de novo assembly and a total of 168,010 (60.79%) unigenes were annotated in the protein database. The comprehensive functional annotation based on the KOG, GO, and KEGG databases revealed that these unigenes are mainly associated with numerous physiological, metabolic, and molecular processes, and that the seven species exhibit similarity in these aspects. By constructing a phylogenetic tree and conducting divergence time analysis, we found that N. bathybius and N. virgatus diverged most recently, approximately during the Neogene Period (14.9 Mya). Compared with other species, N. bathybius and N. virgatus are distributed in deeper water layers. Therefore, we conducted selection pressure analysis using these two species as the foreground branches and identified several environmental-responsive genes. The results indicate that genes such as aqp1, arrdc3, ISP2, Hip, ndufa1, ndufa3, pcyt1a, ctsk, col6a2, casp2 exhibit faster evolutionary rates during long-term adaptation to deep-water environments. Specifically, these genes are considered to be associated with adaptation to aquatic osmoregulation, temperature fluctuations, and skeletal development. This comprehensive analysis provides valuable insights into the evolutionary biology and environmental adaptability of threadfin breams, contributing to the conservation and sustainable management of these species. Full article
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