Genetic Diversity and Molecular Marker Development for Cotton Breeding and Crop Improvement

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Genetics, Genomics and Biotechnology".

Deadline for manuscript submissions: 31 October 2025 | Viewed by 663

Special Issue Editors


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Guest Editor
Department of Plant and Environmental Sciences, New Mexico State University, Las Cruces, NM 88003, USA
Interests: cotton breeding; genetics and genomics
Special Issues, Collections and Topics in MDPI journals

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Guest Editor
BASF, 8850 59th Ave NE, Salem, OR 97305, USA
Interests: plant genetics; plant breeding; disease resistance

Special Issue Information

Dear Colleagues,

Tetraploid Upland cotton (Gossypium hirsutum) is the world’s most important fiber crop, is grown in more than 80 countries, and provides 35% of the total fiber used worldwide. It is also one of the most important oilseed crops, providing oil for food and fuel. Furthermore, cottonseed meal can be an important protein food source for human consumption after the toxic gossypol is removed, in addition to being used as animal feed. The low level of genetic variation within Upland cotton has hampered progress in breeding, although high genetic diversity exists within the cotton genus, it consisting of 48 diploid and 7 tetraploid species. There have been extensive genetic and breeding activities to introduce desirable genes from diploid and other tetraploid species into Upland cotton through interspecific crossing and backcrossing. However, introgression breeding is a long-term task and requires a better understanding of the genetic differences between Upland cotton and other species. This Special Issue aims to publish research and review papers dealing with all aspects of the study of the genetic diversity of cotton at the morphological, physiological, genetic, and molecular levels. That is, towards the improvement of cotton in terms of yield, fiber quality, seed quality, and abiotic and biotic stress tolerance/resistance. Manuscripts in relevant areas from other crop species are also welcome. 

Prof. Dr. Jinfa Zhang
Dr. Yi Zhu
Guest Editors

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Keywords

  • upland cotton
  • genetic diversity
  • molecular marker
  • cotton breeding
  • crop improvement
  • cotton
  • disease resistance

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Published Papers (1 paper)

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Research

19 pages, 2218 KiB  
Article
Phenotypic Validation of the Cotton Fiber Length QTL, qFL-Chr.25, and Its Impact on AFIS Fiber Quality
by Samantha J. Wan, Sameer Khanal, Nino Brown, Pawan Kumar, Dalton M. West, Edward Lubbers, Neha Kothari, Donald Jones, Lori L. Hinze, Joshua A. Udall, William C. Bridges, Christopher Delhom, Andrew H. Paterson and Peng W. Chee
Plants 2025, 14(13), 1937; https://doi.org/10.3390/plants14131937 - 24 Jun 2025
Viewed by 426
Abstract
Advances in spinning technology have increased the demand for upland cotton (Gossypium hirsutum L.) cultivars with superior fiber quality. However, progress in breeding for traits such as fiber length is constrained by limited phenotypic and genetic diversity within upland cotton. Introgression from [...] Read more.
Advances in spinning technology have increased the demand for upland cotton (Gossypium hirsutum L.) cultivars with superior fiber quality. However, progress in breeding for traits such as fiber length is constrained by limited phenotypic and genetic diversity within upland cotton. Introgression from Gossypium barbadense, a closely related species known for its superior fiber traits, offers a promising strategy. Sealand 883 is an obsolete upland germplasm developed through G. barbadense introgression and is known for its long and fine fibers. Previous studies have identified a fiber length quantitative trait locus (QTL) on Chromosome 25, designated qFL-Chr.25, in Sealand 883, conferred by an allele introgressed from G. barbadense. This study evaluated the effect of qFL-Chr.25 in near-isogenic introgression lines (NIILs) using Advanced Fiber Information System (AFIS) measurements. Across four genetic backgrounds, NIILs carrying qFL-Chr.25 consistently exhibited longer fibers, as reflected in multiple length parameters, including UHML, L(n), L(w), UQL(w), and L5%. Newly developed TaqMan SNP diagnostic markers flanking the QTL enable automated, reproducible, and scalable screening of large populations typical in commercial breeding programs. These markers will facilitate the incorporation of qFL-Chr.25 into commercial breeding pipelines, accelerating fiber quality improvement and enhancing the competitiveness of cotton against synthetic fibers. Full article
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