FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis
- Supplementary File 1:
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Externally hosted supplementary file 1
Link: https://github.com/heartlncrna/Analysis_of_FB_Studies
Description: Supplementary Table S1. RNA-seq data of fibroblasts from seven anatomical locales (abdomen, upper gingiva, lung, soft palate, scalp, trachea, and vocal fold; GEO accession number, GSE140523). The average CPM values of each anatomical locale are shown for each gene.; Sup-plementary Table S2. Differentially expressed genes in thrombus compared to pulmonary artery adventitia (control) of CTEPH patients at the threshold of 2-fold (logFC, fold change in logarithm of base 2) and p < 0.05 (PValue) (GEO accession number, GSE149413).; Supplementary Table S3. Differentially expressed genes in TGF-β treated MRC5 lung fibroblastic cell line compared to non-treated MRC5 cells at the threshold of 2-fold (logFC, fold change in logarithm of base 2) and FDR-adjusted p < 0.05 (FDR) (GEO accession number, GSE97829).; Supplementary Table S4. List of differentially expressed genes shared between two data sets: fibroblasts from CTEPH patients and MRC5 cells treated with TGF-β.; Supplementary Table S5. List of differentially expressed genes in pulmonary fibroblasts (CTEPH patients and MRC5 cells treated with TGF-β) and their expression changes in cardiac fibroblasts stimulated with TGF-β for 24 hours compared to the CFs before the TGF-β stimulation (baseline). The category column is based on the RNA-seq data of pulmonary fibroblasts. The logFC column shows the logarithm of base 2 of fold change, while the FDR column displays the FDR-adjusted p-values.; Supplementary Table S6. List of primers used in this study.; Supplementary Table S7. List of antibodies used in this study. -
Externally hosted supplementary file 2
Link: https://github.com/heartlncrna/Analysis_of_FB_Studies
Description: Supplementary Figure S1. Gene expression of tissue-specific human fibroblasts normalized to gene lengths.
Ilieva, M.; Miller, H.E.; Agarwal, A.; Paulus, G.K.; Madsen, J.H.; Bishop, A.J.R.; Kauppinen, S.; Uchida, S. FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis. Non-Coding RNA 2022, 8, 13. https://doi.org/10.3390/ncrna8010013
Ilieva M, Miller HE, Agarwal A, Paulus GK, Madsen JH, Bishop AJR, Kauppinen S, Uchida S. FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis. Non-Coding RNA. 2022; 8(1):13. https://doi.org/10.3390/ncrna8010013
Chicago/Turabian StyleIlieva, Mirolyuba, Henry E. Miller, Arav Agarwal, Gabriela K. Paulus, Jens H. Madsen, Alexander J.R. Bishop, Sakari Kauppinen, and Shizuka Uchida. 2022. "FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis" Non-Coding RNA 8, no. 1: 13. https://doi.org/10.3390/ncrna8010013