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Non-Coding RNA, Volume 7, Issue 2

2021 June - 14 articles

Cover Story: Box C/D small nucleolar RNAs (C/D snoRNAs) represent an ancient family of small non-coding RNAs that are classically viewed as housekeeping guides for the 2′-O-methylation of ribosomal RNA in Archaea and Eukaryotes. However, an extensive set of studies now reveals the unexpected diversity of the expression and maturation of C/D snoRNAs, of the regulation of C/D snoRNP biogenesis and of the C/D snoRNP composition, partners and targets. Consequently, the need for an important effort of molecular dissection has emerged, as currently too few mechanisms are in hand to understand this overt variety. Here, we present the data and point out how these advances are necessary for a renewed understanding of C/D snoRNA functions ranging from classical ones (white left part of the figure) to novel ones (red right part of the figure). View this paper
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Articles (14)

  • Commentary
  • Open Access
15 Citations
5,489 Views
6 Pages

Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), a member of the genus Betacoronavirus in the family Coronaviridae, possesses an unusually large single-stranded viral RNA (ssvRNA) genome of about ~29,811 nucleotides (nt) that causes seve...

(This article belongs to the Collection Non-Coding RNAs, COVID-19, and Long-COVID)
  • Review
  • Open Access
133 Citations
14,014 Views
25 Pages

Development is a complex process regulated both by genetic and epigenetic and environmental clues. Recently, long non-coding RNAs (lncRNAs) have emerged as key regulators of gene expression in several tissues including the brain. Altered expression o...

(This article belongs to the Section Long Non-Coding RNA)
  • Review
  • Open Access
9 Citations
6,174 Views
14 Pages

Long non-coding RNAs (lncRNAs) contribute to cell fate decisions by modulating genome expression and stability. In the fission yeast Schizosaccharomyces pombe, the transition from mitosis to meiosis results in a marked remodeling of gene expression p...

(This article belongs to the Special Issue Non-coding RNA: 5th Anniversary)
  • Review
  • Open Access
11 Citations
5,736 Views
11 Pages

Emerging Role of MicroRNA-200 Family in Dentistry

  • Pei-Ling Hsieh,
  • Chun-Chung Huang and
  • Cheng-Chia Yu

MicroRNAs (miRNAs) are endogenous non-coding RNAs ~22 nucleotides in length, which have been shown to participate in various biological processes. As one of the most researched miRNAs, the miR-200 family has been found to regulate several factors tha...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Review
  • Open Access
21 Citations
8,059 Views
20 Pages

Phenotypes are driven by regulated gene expression, which in turn are mediated by complex interactions between diverse biological molecules. Protein–DNA interactions such as histone and transcription factor binding are well studied, along with RNA–RN...

(This article belongs to the Section Computational Biology)
  • Article
  • Open Access
4 Citations
6,263 Views
15 Pages

Changes of the tRNA Modification Pattern during the Development of Dictyostelium discoideum

  • Anne Hoffmann,
  • Lieselotte Erber,
  • Heike Betat,
  • Peter F. Stadler,
  • Mario Mörl and
  • Jörg Fallmann

Dictyostelium discoideum is a social amoeba, which on starvation develops from a single-cell state to a multicellular fruiting body. This developmental process is accompanied by massive changes in gene expression, which also affect non-coding RNAs. H...

(This article belongs to the Section RNA Modifications)
  • Feature Paper
  • Review
  • Open Access
18 Citations
6,954 Views
16 Pages

It is now commonly accepted that most of the mammalian genome is transcribed as RNA, yet less than 2% of such RNA encode for proteins. A majority of transcribed RNA exists as non-protein-coding RNAs (ncRNAs) with various functions. Because of the lac...

(This article belongs to the Special Issue Non-coding RNA: 5th Anniversary)
  • Review
  • Open Access
23 Citations
8,338 Views
22 Pages

Emerging Data on the Diversity of Molecular Mechanisms Involving C/D snoRNAs

  • Laeya Baldini,
  • Bruno Charpentier and
  • Stéphane Labialle

Box C/D small nucleolar RNAs (C/D snoRNAs) represent an ancient family of small non-coding RNAs that are classically viewed as housekeeping guides for the 2′-O-methylation of ribosomal RNA in Archaea and Eukaryotes. However, an extensive set of studi...

(This article belongs to the Special Issue Non-coding RNA: 5th Anniversary)
  • Editorial
  • Open Access
21 Citations
5,012 Views
2 Pages

The discovery of thousands of non-coding RNAs (ncRNAs) pervasively transcribed from the eukaryotic genome has revolutionized the “central dogma” of biology and shifted the attention on the role of RNAs as regulatory molecules, more than simply tradit...

(This article belongs to the Special Issue Post-transcriptional Regulation through Long Non-coding RNAs (lncRNAs))
  • Article
  • Open Access
13 Citations
7,539 Views
19 Pages

RNA silencing pathways control eukaryotic gene expression transcriptionally or posttranscriptionally in a sequence-specific manner. In RNA silencing, the production of double-stranded RNA (dsRNA) gives rise to various classes of 20–24 nucleotide (nt)...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Article
  • Open Access
6 Citations
7,050 Views
13 Pages

Exon–Intron Differential Analysis Reveals the Role of Competing Endogenous RNAs in Post-Transcriptional Regulation of Translation

  • Nicolas Munz,
  • Luciano Cascione,
  • Luca Parmigiani,
  • Chiara Tarantelli,
  • Andrea Rinaldi,
  • Natasa Cmiljanovic,
  • Vladimir Cmiljanovic,
  • Rosalba Giugno,
  • Francesco Bertoni and
  • Sara Napoli

Stressful conditions induce the cell to save energy and activate a rescue program modulated by mammalian target of rapamycin (mTOR). Along with transcriptional and translational regulation, the cell relies also on post-transcriptional modulation to q...

(This article belongs to the Special Issue Post-transcriptional Regulation through Long Non-coding RNAs (lncRNAs))
  • Review
  • Open Access
7 Citations
6,007 Views
15 Pages

Up until recently, it was believed that pharmaceutical drugs and their metabolites enter into the cell to gain access to their targets via simple diffusion across the hydrophobic lipid cellular membrane, at a rate which is based on their lipophilicit...

(This article belongs to the Section Clinical Applications of Non-Coding RNA)
  • Article
  • Open Access
9 Citations
6,326 Views
15 Pages

Long Non-Coding PROX1-AS1 Expression Correlates with Renal Cell Carcinoma Metastasis and Aggressiveness

  • Magdalena Rudzinska,
  • Karolina H. Czarnecka-Chrebelska,
  • Ekaterina B. Kuznetsova,
  • Sofya V. Maryanchik,
  • Alessandro Parodi,
  • Dmitry O. Korolev,
  • Nataliya Potoldykova,
  • Yulia Svetikova,
  • Andrey Z. Vinarov and
  • Andrey A. Zamyatnin
  • + 1 author

Long non-coding RNAs (lncRNAs) can be specifically expressed in different tissues and cancers. By controlling the gene expression at the transcriptional and translational levels, lncRNAs have been reported to be involved in tumor growth and metastasi...

(This article belongs to the Section Long Non-Coding RNA)
  • Review
  • Open Access
30 Citations
8,844 Views
42 Pages

Colorectal Cancer (CRC) is one of the most common gastrointestinal malignancies which has quite a high mortality rate. Despite the advances made in CRC treatment, effective therapy is still quite challenging, particularly due to resistance arising th...

(This article belongs to the Section Clinical Applications of Non-Coding RNA)
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Non-Coding RNA - ISSN 2311-553X