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Genes, Volume 14, Issue 4

April 2023 - 179 articles

Cover Story: As the global population soars, plant breeders turn to advanced tech like Omics and AI to accelerate crop improvement. This review explores how big data and ML revolutionize plant breeding, providing efficient tools for developing superior varieties. By generating vast amounts of complex data using Omics, breeders employ ML to analyze and manipulate key traits to improve crop performance. We delve into the functions of commonly used ML algorithms, showcasing their role in optimizing the breeding process. Challenges of integrating diverse datasets are addressed with common data integration ML-based strategies. Future prospects of ML in breeding are highlighted, paving the way for innovative approaches to tackle climate change-related agricultural challenges. Overall, AI and big data have profound impacts on breeding, accelerating variety development and enhancing global food security. View this paper
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Articles (179)

  • Article
  • Open Access
10 Citations
2,598 Views
12 Pages

FDXR-Associated Oculopathy: Congenital Amaurosis and Early-Onset Severe Retinal Dystrophy as Common Presenting Features in a Chinese Population

  • Shutong Yi,
  • Yuxi Zheng,
  • Zhen Yi,
  • Yingwei Wang,
  • Yi Jiang,
  • Jiamin Ouyang,
  • Shiqiang Li,
  • Xueshan Xiao,
  • Wenmin Sun and
  • Panfeng Wang
  • + 1 author

21 April 2023

Variants in FDXR reportedly cause autosomal recessive auditory neuropathy and optic atrophy, expanding to retinal dystrophy. This study aimed to further clarify associated phenotypes. FDXR variants were selected from our in-house whole-exome sequenci...

  • Article
  • Open Access
8 Citations
2,537 Views
12 Pages

The Glutathione Peroxidase Gene Family in Nitraria sibirica: Genome-Wide Identification, Classification, and Gene Expression Analysis under Stress Conditions

  • Ziming Lian,
  • Jingbo Zhang,
  • Zhaodong Hao,
  • Liming Zhu,
  • Yuxin Liu,
  • Hao Fang,
  • Ye Lu,
  • Xinle Li,
  • Jisen Shi and
  • Jinhui Chen
  • + 1 author

21 April 2023

Plant glutathione peroxidases (GPXs) are the main enzymes in the antioxidant defense system that sustain H2O2 homeostasis and normalize plant reaction to abiotic stress conditions. However, the genome-wide identification of the GPX gene family and it...

  • Feature Paper
  • Article
  • Open Access
6 Citations
2,550 Views
14 Pages

21 April 2023

Radix bupleuri is one of the bulk medicinal materials in China and it is widely adopted in clinical applications and drug discovery. The investigation of agronomic traits, active component content and genetic diversity in diverse Radix bupleuri germp...

  • Review
  • Open Access
5 Citations
5,868 Views
20 Pages

21 April 2023

Operons represent one of the leading strategies of gene organization in prokaryotes, having a crucial influence on the regulation of gene expression and on bacterial chromosome organization. However, there is no consensus yet on why, how, and when op...

  • Brief Report
  • Open Access
7 Citations
4,091 Views
11 Pages

21 April 2023

Microalgae biotechnology has the potential to produce high quality bioproducts in a sustainable manner. Here, Chlamydomonas reinhardtii has shown great potential as a host for biotechnological exploitation. However, low expression of nuclear transgen...

  • Communication
  • Open Access
1 Citations
3,022 Views
11 Pages

Contribution of LRP1 in Human Congenital Heart Disease Correlates with Its Roles in the Outflow Tract and Atrioventricular Cushion Development

  • Angelo B. Arrigo,
  • Wenjuan Zhu,
  • Kylia A. Williams,
  • Carla Guzman-Moreno,
  • Cecilia Lo and
  • Jiuann-Huey I. Lin

21 April 2023

Due to the prevalence of congenital heart disease in the human population, determining the role of variants in congenital heart disease (CHD) can give a better understanding of the cause of the disorder. A homozygous missense mutation in the LDL rece...

  • Article
  • Open Access
3 Citations
2,983 Views
14 Pages

RNA-Sequencing Characterization of lncRNA and mRNA Functions in Septic Pig Liver Injury

  • Jing Zhang,
  • Zhihui Xue,
  • Qingbo Zhao,
  • Keke Zhang,
  • Ao Zhou,
  • Liangyu Shi and
  • Yulan Liu

20 April 2023

We assessed differentially expressed (DE) mRNAs and lncRNAs in the liver of septic pigs to explore the key factors regulating lipopolysaccharide (LPS)-induced liver injury. We identified 543 DE lncRNAs and 3642 DE mRNAs responsive to LPS. Functional...

  • Article
  • Open Access
6 Citations
2,729 Views
15 Pages

Intrafollicular Retinoic Acid Signaling Is Important for Luteinizing Hormone-Induced Oocyte Meiotic Resumption

  • Fupeng Wang,
  • Yawen Tang,
  • Yijie Cai,
  • Ran Yang,
  • Zongyu Wang,
  • Xiaodong Wang,
  • Qianying Yang,
  • Wenjing Wang,
  • Jianhui Tian and
  • Lei An

20 April 2023

It has been clear that retinoic acid (RA), the most active vitamin A (VA) derivative, plays a central role in governing oocyte meiosis initiation. However, it has not been functionally determined if RA participates in luteinizing hormone (LH)-induced...

  • Article
  • Open Access
3 Citations
2,777 Views
15 Pages

20 April 2023

Clear-cell renal cell carcinoma (ccRCC) is the most common and aggressive type of renal-cell carcinoma (RCC). Sperm-associated antigen 9 (SPAG9) has been reported to promote the progression of a variety of tumors and is thus a potential prognostic ma...

  • Article
  • Open Access
9 Citations
2,798 Views
14 Pages

Gene Losses and Homology of the Chloroplast Genomes of Taxillus and Phacellaria Species

  • Liwei Wu,
  • Panhui Fan,
  • Jianguo Zhou,
  • Yonghua Li,
  • Zhichao Xu,
  • Yulin Lin,
  • Yu Wang,
  • Jingyuan Song and
  • Hui Yao

19 April 2023

Research on the chloroplast genome of parasitic plants is limited. In particular, the homology between the chloroplast genomes of parasitic and hyperparasitic plants has not been reported yet. In this study, three chloroplast genomes of Taxillus (Tax...

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Genes - ISSN 2073-4425