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19 pages, 11438 KB  
Article
First Fledgling Case Suggesting Re-Establishment of the Transmission Cycle of Chaunocephalus ferox (Digenea: Echinostomatidae) in the Reintroduced Sedentary Oriental Stork (Ciconia boyciana) Population in Japan, with Special Reference to Its Phylogenetic Relationships with Other Echinostomatid Flukes
by Toshiyuki Kuriyagawa, Chiaki Kita, Istiana Nur Vidayanti, Topas Wicaksono Priyo Jr and Hiroshi Sato
Conservation 2026, 6(3), 97; https://doi.org/10.3390/conservation6030097 - 10 Aug 2026
Viewed by 358
Abstract
The Oriental stork, Ciconia boyciana Swinhoe, 1873 (Ciconiiformes: Ciconiidae), once common as a sedentary stork species across Japan, experienced a marked population decline during the last century, reaching extinction in the country in 1971 as a result of anthropogenic alterations to the natural [...] Read more.
The Oriental stork, Ciconia boyciana Swinhoe, 1873 (Ciconiiformes: Ciconiidae), once common as a sedentary stork species across Japan, experienced a marked population decline during the last century, reaching extinction in the country in 1971 as a result of anthropogenic alterations to the natural environment. After the reintroduction of five captive descendants of continental pairs in 2005, the naturalized population of Oriental storks has steadily increased in Japan, reaching >500 wild storks by 2025. We recently encountered a case of apparent intestinal fluke infection with Chaunocephalus ferox (Echinostomata; Echinostomatidae) in a 2-month-old stork fledgling within a few days after leaving the nest on 29 June 2025. The parasite was subjected to morphological and molecular identification based on nucleotide sequences of the small- to large-subunit ribosomal RNA gene and mitochondrial cytochrome c oxidase subunit 1 gene and was identified as C. ferox, a parasite exhibiting high host specificity for ciconiid birds worldwide. This finding suggests the re-establishment of its natural transmission cycle in the field in Japan, accompanied by the dispersal of definitive hosts after a gap of at least 30 years. Following the establishment of a reintroduced sedentary Oriental stork population in Japan, this health-threatening chaunocephalosis may, by chance, have a pronounced impact on infection-susceptible stork chicks cared for and fed by parent birds inhabiting fields with dense C. ferox endemicity (hotspots). Another Oriental stork fledgling from the same nest in June 2025 survived and was observed in March 2026 in a paddy field at a distant locality. Parasites are natural components of healthy ecosystems that contribute to biodiversity and trophic balance; therefore, inappropriate anthropogenic habitat modification may create scenarios in which parasites become overly destructive rather than serving merely as ecological regulators. Full article
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23 pages, 3148 KB  
Article
Rising Reptile Trade from Kenya: Analysis of CITES-Listed Captive-Bred Wildlife Exports
by Angie Elwin, Ephraim Batungbacal and Patrick Muinde
Conservation 2026, 6(2), 56; https://doi.org/10.3390/conservation6020056 - 4 May 2026
Viewed by 1826
Abstract
Kenya has a long history of both legal and illegal wildlife trade, functioning as a source, consumer, and transit hub within global wildlife markets. Yet, despite its increasing prominence, the scale and composition of Kenya’s captive-bred and ranched wildlife trade sectors remain poorly [...] Read more.
Kenya has a long history of both legal and illegal wildlife trade, functioning as a source, consumer, and transit hub within global wildlife markets. Yet, despite its increasing prominence, the scale and composition of Kenya’s captive-bred and ranched wildlife trade sectors remain poorly characterized, particularly following the enactment of the Wildlife Conservation and Management Act (WCMA) in 2013. This study addresses this gap by analyzing Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) annual report data from 2013 to 2023 to: (1) identify trends in the volume and taxonomic composition of CITES-listed species exported as captive-bred or ranched from Kenya; (2) quantify the number of specimens and individuals traded; (3) assess their conservation status and legal classification; and (4) identify key export destinations. Between 2013 and 2023, Kenya reported 886 CITES export records involving captive-bred and ranched specimens from 28 vertebrate taxa across nine orders. Reptiles dominated exports (81% of records), followed by birds (15%) and mammals (4%). Live animals accounted for 80% of records (with reptiles comprising 96.1% of all live animal export records), totaling more than 870,000 individuals traded over the study period. The annual number of export records more than doubled across the decade, while exports of individual live reptiles increased more than tenfold, from 8551 individuals in 2013 to 86,330 in 2023. Most exports were commercial (93%) with the United States, Germany, Spain, Taiwan, and the Republic of Korea identified as major importers. 77% of exported species have unknown or declining wild population trends, and seven species are internationally threatened, including the Critically Endangered pancake tortoise (Malacochersus tornieri). We highlight the animal welfare, conservation, and biosecurity implications of this rapidly expanding trade, as well as consistent discrepancies between exporter- and importer-reported quantities that indicate substantial monitoring and regulatory challenges. The findings provide timely evidence to inform national wildlife management and protection measures, and ongoing policy discussions including those surrounding the forthcoming Wildlife Conservation and Management Bill (2025) and the role of captive breeding in Kenya’s wildlife trade. Full article
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14 pages, 1144 KB  
Article
Sociability Linked to Reproductive Status Affects Intestinal Parasite Infections in the Red-Billed Chough
by Guillermo Blanco, Maria M. Garijo-Toledo, José Luis González del Barrio, Óscar Frías, Raymundo Montoya Ayala and Iñigo Palacios-Martínez
Pathogens 2025, 14(9), 915; https://doi.org/10.3390/pathogens14090915 - 11 Sep 2025
Cited by 1 | Viewed by 1399
Abstract
Social behaviour plays a crucial role in the dynamics of parasitic infections in wild bird populations. The red-billed chough (Pyrrhocorax pyrrhocorax), a corvid undergoing notable population declines, shows contrasting social structures linked to reproductive status: non-breeding individuals aggregate in communal roosts [...] Read more.
Social behaviour plays a crucial role in the dynamics of parasitic infections in wild bird populations. The red-billed chough (Pyrrhocorax pyrrhocorax), a corvid undergoing notable population declines, shows contrasting social structures linked to reproductive status: non-breeding individuals aggregate in communal roosts during winter, whereas breeding pairs often maintain territorial pair-bonds and roost at nesting sites. This study tested whether differences in sociality (communal roosting vs. territorial pairs) affect intestinal parasite infections. Fresh faecal samples were collected during winter in central Spain and analysed using flotation and McMaster techniques to detect and quantify coccidian oocysts and helminth eggs. The results revealed a relatively high positive rate of Isospora (36.2%, n = 116) and a low positive rate of helminths (9.5%, n = 116) among communally roosting non-breeders, while no parasites were detected in samples from territorial pairs. One communal roost in the Southern Plateau showed higher coccidian positive rate, possibly influenced by structural features that facilitate faecal contact. Although sample size for pairs was limited, the absence of parasites in this group suggests reduced infection risk, likely reflecting superior condition and immune defences rather than differences in exposure alone. These findings highlight the value of non-invasive parasite monitoring as an early-warning tool in wildlife health assessments and stress the importance of considering social behaviour and environmental heterogeneity into conservation strategies for threatened species. Full article
(This article belongs to the Special Issue Parasitic Helminths and Control Strategies)
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19 pages, 2399 KB  
Article
Immunogenicity of a Recombinant Avian Influenza H2 Protein Using an Abdominal Inoculation Model in Chickens
by Juan Rondón-Espinoza, Gina Castro-Sanguinetti, Ana Apaza-Chiara, Rosa Gonzalez-Veliz, Alonso Callupe-Leyva, Vikram N. Vakharia, Eliana Icochea and Juan More-Bayona
Vaccines 2025, 13(9), 926; https://doi.org/10.3390/vaccines13090926 - 30 Aug 2025
Viewed by 1305
Abstract
Background/Objectives: Avian influenza represents a major threat to both animal and public health. Our group has tracked avian influenza viruses circulating in wild birds in Peru during the last 20 years. While most of these viruses are low-pathogenic avian influenza strains, some exhibit [...] Read more.
Background/Objectives: Avian influenza represents a major threat to both animal and public health. Our group has tracked avian influenza viruses circulating in wild birds in Peru during the last 20 years. While most of these viruses are low-pathogenic avian influenza strains, some exhibit genetic changes that significantly diverge from common circulating viruses. We selected a highly divergent hemagglutinin H2 gene from a genetically characterized avian influenza virus to develop a recombinant protein using a baculovirus system. Methods: We administered 5 µg and 20 µg doses of the recombinant H2 protein (rH2) into 3-week-old chickens using an abdominal cavity inoculation model to evaluate the activation of innate immune responses. Chickens were euthanized at 24 and 72 h post inoculation and an abdominal lavage was performed to harvest the abdominal cavity content. Results: Infiltrating cells were counted and their cell viability was measured using an Annexin V/PI staining. At 24 h, a large proportion of infiltrating leukocytes were identified as heterophils, monocyte/macrophages and lymphocytes. These proportions changed at 72 h, with a decrease in heterophils and increase in monocyte and lymphocyte pools. We observed strong cellular activity in abdominal leukocytes at 24 h, with a decline in activation levels at 72 h. Cytokine expression suggested a tightly regulated immune response during the 72 h period, while a more sustained response was observed at the 20 µg dose. Antibody levels demonstrated the capacity of the rH2 protein to induce long-term responses. Conclusions: These results revealed that the baculovirus-expressed rH2 protein induces a controlled immune activation, a long-term immune response, holding promise as a potential vaccine candidate for animal health. Full article
(This article belongs to the Section Veterinary Vaccines)
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18 pages, 1618 KB  
Article
Native Grass Enhances Bird, Dragonfly, Butterfly and Plant Biodiversity Relative to Conventional Crops in Midwest, USA
by Steven I. Apfelbaum, Susan M. Lehnhardt, Michael Boston, Lea Daly, Gavin Pinnow, Kris Gillespie and Donald M. Waller
Agriculture 2025, 15(15), 1666; https://doi.org/10.3390/agriculture15151666 - 1 Aug 2025
Cited by 2 | Viewed by 2583
Abstract
Conspicuous declines in native grassland habitats have triggered sharp reductions in grassland birds, dragonflies, butterflies, and native plant populations and diversity. We compared these biotic groups among three crop type treatments: corn, alfalfa, and a perennial native grass, Virginia wild rye, (Elymus [...] Read more.
Conspicuous declines in native grassland habitats have triggered sharp reductions in grassland birds, dragonflies, butterflies, and native plant populations and diversity. We compared these biotic groups among three crop type treatments: corn, alfalfa, and a perennial native grass, Virginia wild rye, (Elymus virginicus L.) or VWR. This crop type had 2-3X higher bird, dragonfly, butterfly and plant species richness, diversity, and faunal abundance relative to alfalfa and corn types. VWR crop fields also support more obligate grassland bird species and higher populations of dragonfly and butterfly species associated with grasslands and wet meadows. In contrast, the corn and alfalfa types support few or no obligatory grassland birds and mostly non-native insects such as the white cabbage looper (Artogeia rapae L.), the common yellow sulfur butterfly (Colias philodice Godart.), and the mobile and migratory common green darner dragonfly (Anax junius Drury.). In sum, the VWR perennial native grass crop type offers a special opportunity to improve the diversity and abundance of grassland bird species, beneficial insect species, and many native plant species within agricultural landscapes. Full article
(This article belongs to the Section Agricultural Systems and Management)
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15 pages, 684 KB  
Article
Bibliometric Analysis of Highly Pathogenic Avian Influenza Research Globally from 2003 to 2023
by Clement Meseko, Uwem Okon Edet, Okoroiwu Henshaw, Nicodemus Mkpuma, Kayode Abraham Olawuyi and Charles Archibong
Germs 2025, 15(1), 11-25; https://doi.org/10.18683/germs.2025.1451 (registering DOI) - 31 Mar 2025
Cited by 10 | Viewed by 532
Abstract
Introduction: Despite decades of research on highly pathogenic avian influenza, especially H5N1, an understanding of the impact of research outputs on policy, the impact of funding and policies, collaboration between authors, and other bibliometric measurable indices is elusive. Methods: H5N1 research data were [...] Read more.
Introduction: Despite decades of research on highly pathogenic avian influenza, especially H5N1, an understanding of the impact of research outputs on policy, the impact of funding and policies, collaboration between authors, and other bibliometric measurable indices is elusive. Methods: H5N1 research data were retrieved from the PubMed database using “H5N1”, “highly pathogenic”, and “influenza” as keywords, and combined with the Boolean operator, “OR”. The evaluated growth pattern of H5N1 research was analysed using Microsoft Excel, while the VOS viewer window version 1.6.15 was utilized in analyzing the keywords, authors’ inputs, and collaborations amongst research institutes/universities involved in H5N1 research. Results: A total of 8411 articles published within 2003 and 2023 were retrieved. The trend of the published articles indicates that 2003 to 2004 had the lowest number of articles, while the highest were observed for 2009 and 2010. Since then, there has been a gradual decline. The most dominant article type was original research article (89.80%), followed by reviews with 7.54%. The most productive countries were Japan, the United States of America, China, and Egypt in Africa. The top 15 authors accounted for 12.40% of the total published data. Keywords analysis revealed the emergence of newer keywords such as H5N8, wild birds, mammals, and Nigeria; however, as expected, influenza virus avian H5N1 subtype was the dominant keyword. Research institutes with backgrounds in agriculture and veterinary medicine dominated the top 15 organizations involved in H5N1 research. Conclusions: Our findings suggest that research aimed at developing therapeutics and vaccines, as well as continuous surveillance in high-risk areas is urgently needed. Furthermore, the findings provide baseline data for all the stakeholders involved in H5N1 research, which could inform future research, funding, and policies. Full article
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16 pages, 4111 KB  
Article
Parental Hacking—An Alternative Reintroduction Method for the White-Tailed Sea Eagle (Haliaeetus albicilla)
by Eva Meyrier, Jacques-Olivier Travers and Bernd-Ulrich Meyburg
Diversity 2025, 17(2), 89; https://doi.org/10.3390/d17020089 - 25 Jan 2025
Cited by 1 | Viewed by 2888
Abstract
In an age of rewilding and dramatic declines in biodiversity, we are developing a new way to reintroduce raptors: parental hacking. The principle behind it is similar to traditional hacking, where the birds are released without contact with adult conspecifics. In parental hacking, [...] Read more.
In an age of rewilding and dramatic declines in biodiversity, we are developing a new way to reintroduce raptors: parental hacking. The principle behind it is similar to traditional hacking, where the birds are released without contact with adult conspecifics. In parental hacking, our method, the parents feed their own offspring until the end of the post-fledgling dependency period. Our programme aims to reintroduce the white-tailed sea eagle (Haliaeetus albicilla) to the Upper Rhône Basin in France. It started in 2022 and will continue until 2030, with the release of 80 young eagles. We describe the method used in 2022, followed by the improvements made in 2023, and finally compare the two years. The young eagles were raised in aviaries at the reintroduction site by their captive-born parents in the Aigles du Léman Park (Haute-Savoie, France). In 2022, two young females and two young males were released as soon as they were able to fly at the age of three months, but they often ended up on the ground due to a lack of flying ability and attacks from wild black kites (Milvus migrans) defending their territory. Therefore, the young eagles were returned to their parents’ aviary before being released a second time at five months in August 2022. One month after release, one male was already 50 km from the reintroduction site, while the other three stayed close to the park. In 2023, five young females and five young males were released at five months. This came after four weeks in a large training aviary to learn how to fly, perch, and fish. The behaviour of the young eagles after release varied greatly between individuals. Overall, 4 out of 10 young eagles travelled long distances and did not return to the reintroduction site to feed within a month, while the other 6 chose to stay close (within 20 km) to the reintroduction site. Full article
(This article belongs to the Special Issue Conservation and Ecology of Raptors—2nd Edition)
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12 pages, 1328 KB  
Article
Highly Pathogenic Avian Influenza Contributes to the Population Decline of the Peregrine Falcon (Falco peregrinus) in The Netherlands
by Valentina Caliendo, Beatriz Bellido Martin, Ron A. M. Fouchier, Hans Verdaat, Marc Engelsma, Nancy Beerens and Roy Slaterus
Viruses 2025, 17(1), 24; https://doi.org/10.3390/v17010024 - 27 Dec 2024
Cited by 12 | Viewed by 4837
Abstract
Highly pathogenic avian influenza (HPAI) epizootics have caused repeated mass mortality events among wild birds. The effect of the infection is potentially detrimental for a variety of bird species, including the Peregrine Falcon (Falco peregrinus). The numbers of wintering and breeding [...] Read more.
Highly pathogenic avian influenza (HPAI) epizootics have caused repeated mass mortality events among wild birds. The effect of the infection is potentially detrimental for a variety of bird species, including the Peregrine Falcon (Falco peregrinus). The numbers of wintering and breeding Peregrine Falcons in the Netherlands have recently declined. We investigated the changes in population trends in relation to HPAI H5 virus outbreaks. For this purpose, we analyzed variations in annual numbers of wintering and breeding birds, the virology of reported dead birds, and the presence of the HPAI H5 virus in unhatched eggs. We showed that significant mortalities of Peregrine Falcons had occurred in 2016–2017 and 2020–2023, years of major HPAI H5 virus outbreaks. In particular, the highest rates of bird mortality and HPAI virus infection were reported in 2023. In this year, over 80% (28/32) of the tested birds were positive for HPAI H5 virus. No HPAI H5 virus was present in the eggs. Based on these findings, we concluded that HPAI represents a serious threat to the Peregrine Falcon population in the Netherlands, and, in combination with anthropogenic factors, may contribute to the decline of this species. Targeted HPAI surveillance and disease mitigation measures are necessary for the conservation of this species. Full article
(This article belongs to the Special Issue H5N1 Influenza Viruses)
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16 pages, 5637 KB  
Article
China’s International Trade of Parrots from 1981 to 2022 Based on the CITES Trade Database
by Jinming Zhang, Qingqing Wang and Jianbin Shi
Animals 2024, 14(21), 3076; https://doi.org/10.3390/ani14213076 - 25 Oct 2024
Cited by 6 | Viewed by 5215
Abstract
Parrots are popular with pet consumers and are one of the most traded groups of live birds around the world. China has been considered as an important country in bird trades, but we know little about China’s import and export of parrots. Using [...] Read more.
Parrots are popular with pet consumers and are one of the most traded groups of live birds around the world. China has been considered as an important country in bird trades, but we know little about China’s import and export of parrots. Using the latest data available from the CITES Trade Database, we analyzed China’s import and export of CITES-listed live parrots from 1981–2022 to better understand the patterns and dynamics of these trades. China imported 155,339 parrots of 173 species and exported 608,987 parrots of 42 species during the study period with an annual average of about 18,500 individuals, accounting for c. 5% of the global average number. The most imported parrots to China were Grey Parrot (Psittacus erithacus) and Monk Parakeet (Myiopsitta monachus), while the most exported ones were Fisher’s Lovebirds (Agapornis fischeri), Rosy-faced Lovebirds (Agapornis roseicollis), and Yellow-collared Lovebird (Agapornis personatus). Since the early 21st century, China’s imports of parrots gradually increased, but exports decreased more pronouncedly, making China’s international parrot trade volume declining in the past 20 years. China’s international parrot trade routes also changed over time, with the destination of parrot exports shifting from Europe to Africa and the Arabian region, while more parrots being gradually imported from countries in South America and Africa. The vast majority of parrots exported from China were captive-bred non-native species like Fisher’s Lovebirds, while a substantial proportion of imported parrots were wild-sourced and the proportion has been increasing in the last decade. The fact that China exported much more parrots than imported suggests existence of large-scale parrot farming and domestic parrot trade in China. Attention needs to be paid to monitoring China’s import of increasing proportion of wild-sourced parrots from South America countries and its potential impacts on their wild populations. Close monitoring of and more studies on domestic and illegal parrot trade are essential to fully understand the role China plays in the international trade of parrots. Full article
(This article belongs to the Section Birds)
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9 pages, 1531 KB  
Review
Review of the Highly Pathogenic Avian Influenza in Argentina in 2023: Chronicle of Its Emergence and Control in Poultry
by Ariel E. Vagnozzi
Pathogens 2024, 13(9), 810; https://doi.org/10.3390/pathogens13090810 - 19 Sep 2024
Cited by 3 | Viewed by 2415
Abstract
Highly pathogenic avian influenza (HPAI) is a highly contagious viral disease that represents a significant threat to poultry production worldwide. Variants of the HPAI virus (HPAIV) H5A/Goose/GuangDong/1/96 (H5 Gs/GD/96) lineage have caused five intercontinental epizootic waves, with the most recent, clade 2.3.4.4b, reaching [...] Read more.
Highly pathogenic avian influenza (HPAI) is a highly contagious viral disease that represents a significant threat to poultry production worldwide. Variants of the HPAI virus (HPAIV) H5A/Goose/GuangDong/1/96 (H5 Gs/GD/96) lineage have caused five intercontinental epizootic waves, with the most recent, clade 2.3.4.4b, reaching Argentina in February 2023. Initially detected in wild birds, the virus quickly spread to backyard and commercial poultry farms, leading to economic losses, including the loss of influenza-free status (IFS). By March/April 2023 the epidemic had peaked and vaccination was seriously considered. However, the success of strict stamping-out measures dissuaded the National Animal Health Authority (SENASA) from authorizing any vaccine. Suspected cases sharply declined by May, and the last detection in commercial poultry was reported in June. The effective control and potential eradication of HPAIV in Argentina were due to SENASA’s early detection and rapid response, supported by private companies, veterinarians, and other stakeholders. Stamping-out measures have been effective for virus elimination and reduced farm-to-farm transmission; however, as the virus of this clade may remain present in wild birds, the risk of reintroduction into poultry production is high. Therefore, maintaining continuous active surveillance will be crucial for promptly detecting any new HPAIV incursion and taking appropriate action to contain virus dissemination. Full article
(This article belongs to the Special Issue Pathogenesis, Epidemiology, and Control of Animal Influenza Viruses)
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17 pages, 2849 KB  
Article
Synergistic Threats to Wild Fauna in Ecuador: Using a Novel Data Source to Estimate the Impacts of Trafficking and Human–Wildlife Conflict
by Ricardo Villalba-Briones, Patricia Mendoza, Daniel Garces, Eliana Belen Molineros, Juan S. Monros and Sam Shanee
Diversity 2024, 16(8), 490; https://doi.org/10.3390/d16080490 - 11 Aug 2024
Cited by 1 | Viewed by 5792
Abstract
Wildlife trafficking and human–wildlife conflict are major causes of species decline. The illegal nature of wildlife trafficking makes it hard, and sometimes dangerous, to study. ‘Mansión Mascota’ is a veterinary clinic in Guayaquil, Ecuador, which, through agreement with the Ecuadorian Ministry of the [...] Read more.
Wildlife trafficking and human–wildlife conflict are major causes of species decline. The illegal nature of wildlife trafficking makes it hard, and sometimes dangerous, to study. ‘Mansión Mascota’ is a veterinary clinic in Guayaquil, Ecuador, which, through agreement with the Ecuadorian Ministry of the Environment, receives confiscated wildlife for treatment. Mansión Mascota also receives injured and abandoned wildlife brought in by the authorities and the public. Between January 2018 and September 2022, the clinic received 3212 wild animals from ≥171 taxa, including mammals, birds, reptiles, and amphibians. Through the classification of records based on reported use, native distribution, and evidence of capture/pet keeping, we were able to classify 1127 animals of 68 species as subject to wildlife trafficking. Turtles were the most abundant group (69%). The majority of turtles (91%) and primates (80%) were of Amazonian origin, whereas 90% of psittacines and 97% of carnivores had potential coastal origins. Threatened and conservation-dependent species were common in the traffic. Furthermore, ≥955 animals of 106 species were brought to the clinic due to anthropogenic wildlife conflict. Trafficking, combined with the high number of injured animals, highlights the synergistic threats facing wildlife in Ecuador. Full article
(This article belongs to the Special Issue Human Wildlife Conflict across Landscapes—Second Edition)
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16 pages, 9862 KB  
Article
Metagenomic and Antibiotic Resistance Analysis of the Gut Microbiota in Larus relictus and Anatidae Species Inhabiting the Honghaizi Wetland of Ordos, Inner Mongolia, from 2021 to 2023
by Ronglei Huang, Xue Ji, Lingwei Zhu, Chengyang Zhang, Tingting Luo, Bing Liang, Bowen Jiang, Ang Zhou, Chongtao Du and Yang Sun
Microorganisms 2024, 12(5), 978; https://doi.org/10.3390/microorganisms12050978 - 13 May 2024
Cited by 4 | Viewed by 2305
Abstract
Gut microbes thrive by utilising host energy and, in return, provide valuable benefits, akin to a symbiotic relationship. Here, metagenomic sequencing was performed to characterise and compare the community composition, diversity and antibiotic resistance of the gut microbiota of Relict gull (Larus [...] Read more.
Gut microbes thrive by utilising host energy and, in return, provide valuable benefits, akin to a symbiotic relationship. Here, metagenomic sequencing was performed to characterise and compare the community composition, diversity and antibiotic resistance of the gut microbiota of Relict gull (Larus relictus) and Anatidae species. Alpha diversity analysis revealed that the intestinal microbial richness of L. relictus was significantly lower than that of Anatidae, with distinct differences observed in microbial composition. Notably, the intestines of L. relictus harboured more pathogenic bacteria such as clostridium, which may contribute to the decline in their population and endangered status. A total of 117 strains of Escherichia coli were isolated, with 90.60% exhibiting full susceptibility to 21 antibiotics, while 25.3% exhibited significant biofilm formation. Comprehensive Antibiotic Resistance Database data indicated that glycopeptide resistance genes were the most prevalent type carried by migratory birds, alongside quinolone, tetracycline and lincosamide resistance genes. The abundance of resistance genes carried by migratory birds decreased over time. This metagenomic analysis provides valuable insights into the intestinal microbial composition of these wild bird species, offering important guidance for their conservation efforts, particularly for L. relictus, and contributing to our understanding of pathogen spread and antibiotic-resistant bacteria. Full article
(This article belongs to the Section Microbiomes)
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16 pages, 911 KB  
Article
Avian Haemosporidian Infection in Wildlife Rehabilitation Centres of Portugal: Causes, Consequences, and Genetic Diversity
by João T. Cruz, Luís Madeira de Carvalho, Mariana Ribeiro Ferreira, Carolina Nunes, María Casero and Alfonso Marzal
Animals 2024, 14(8), 1216; https://doi.org/10.3390/ani14081216 - 18 Apr 2024
Cited by 10 | Viewed by 3403
Abstract
In the last decade, over 40% of bird species in Europe have experienced poor and bad conservation status, with more than 30% of bird species in mainland Portugal threatened with extinction. Along with anthropogenic factors, parasites and pathogens such as avian haemosporidians have [...] Read more.
In the last decade, over 40% of bird species in Europe have experienced poor and bad conservation status, with more than 30% of bird species in mainland Portugal threatened with extinction. Along with anthropogenic factors, parasites and pathogens such as avian haemosporidians have been suggested to be responsible for these avian population declines. Wildlife rehabilitation centres play an essential role in species conservation and preservation. Moreover, animals admitted for rehabilitation can provide valuable information regarding transmission and pathogenicity of many diseases that affect wild birds that are rarely sampled in nature. However, reports of haemosporidians in captive birds are still limited. Here, we explored the prevalence and genetic diversity of avian haemosporidians in 89 birds from 29 species admitted to rehabilitation centres in Portugal, showing an overall infection prevalence of 30.3%. The prevalence of infection was higher in Strigiformes and in birds admitted to rehabilitation centres due to debilitating diseases. Remarkably, 30% of the infected bird species have not been found to harbour malaria parasites in preceding studies. We detected 15 different haemosporidian lineages infecting a third of bird species sampled. Notably, 2 out of these 15 detected haemosporidian lineages have not been obtained previously in other studies. Furthermore, we also identified nine new host–parasite interactions representing new host records for these haemosporidian parasites. Finally, our results revealed that birds infected with haemosporidians require longer rehabilitation treatments, which increase the economic costs for rehabilitation and may impair their survival prospects. These findings emphasise the importance of integrating haemosporidian infection considerations into rehabilitation protocols, highlighting the challenges posed by these infections in avian conservation and rehabilitation, including economic and logistical demands. Full article
(This article belongs to the Special Issue Avian Haemosporidian Parasites: Causes and Consequences of Infection)
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27 pages, 3427 KB  
Article
Trends in Admissions and Outcomes at a British Wildlife Rehabilitation Centre over a Ten-Year Period (2012–2022)
by Elizabeth Mullineaux and Chris Pawson
Animals 2024, 14(1), 86; https://doi.org/10.3390/ani14010086 - 26 Dec 2023
Cited by 24 | Viewed by 7735
Abstract
Millions of animals pass through wildlife rehabilitation centres (WRCs) globally each year, some dying in captivity, others euthanised, and some released into the wild. Those caring for these animals are generally well-intentioned, but skills, knowledge, and resources may be limited, potentially compromising animal [...] Read more.
Millions of animals pass through wildlife rehabilitation centres (WRCs) globally each year, some dying in captivity, others euthanised, and some released into the wild. Those caring for these animals are generally well-intentioned, but skills, knowledge, and resources may be limited, potentially compromising animal welfare. WRC databases provide an opportunity to provide an evidence base for treatment and conservation efforts. 42,841 records of animals admitted over a 10-year period to a British WRC were analysed. More birds (69.16%) were admitted than mammals (30.48%) and reptiles and amphibians (0.36%). Most admissions were in the summer (48.8%) and spring (26.0%) months. A total of 9 of the 196 species seen made up 57% of admissions, and hedgehogs were the most common species admitted (14% of all admissions and 20% of mammals). Juvenile animals (35.5%) were admitted more frequently than ‘orphans’ (26.0%) or adults (26.4%). ‘Orphaned’ was also the predominant reason for admission (28.3%), followed by ‘injured’ (25.5%). 42.6% of animals were eventually released back to the wild, 19.2% died in captivity, and 37.2% were euthanised; 1% of outcomes were unknown. The prognosis was better for orphaned animals than for those admitted because of injury. Unexpected natural deaths in captivity were found to decline over the period of study, consistent with improved early triage. These findings can be used to focus veterinary and WRC training and seasonal resources on the species and case types most likely to be successfully rehabilitated and released. The findings also have the potential to contribute to our understanding of anthropogenic impacts, historical and regional variations in ecosystem health, and resultant implications for animal welfare. Full article
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15 pages, 6636 KB  
Communication
Evolutionary Analysis of a Parrot Bornavirus 2 Detected in a Sulphur-Crested Cockatoo (Cacatua galerita) Suggests a South American Ancestor
by Ruy D. Chacón, Christian J. Sánchez-Llatas, Andrea J. Diaz Forero, Marta B. Guimarães, Sarah L. Pajuelo, Claudete S. Astolfi-Ferreira and Antonio J. Piantino Ferreira
Animals 2024, 14(1), 47; https://doi.org/10.3390/ani14010047 - 22 Dec 2023
Cited by 8 | Viewed by 3810
Abstract
Parrot bornavirus (PaBV) is an RNA virus that causes Proventricular Dilatation Disease (PDD), neurological disorders, and death in Psittaciformes. Its diversity in South America is poorly known. We examined a Cacatua galerita presenting neuropathies, PDD, and oculopathies as the main signs. We [...] Read more.
Parrot bornavirus (PaBV) is an RNA virus that causes Proventricular Dilatation Disease (PDD), neurological disorders, and death in Psittaciformes. Its diversity in South America is poorly known. We examined a Cacatua galerita presenting neuropathies, PDD, and oculopathies as the main signs. We detected PaBV through reverse transcription polymerase chain reaction (RT-PCR) and partial sequencing of the nucleoprotein (N) and matrix (M) genes. Maximum likelihood and Bayesian phylogenetic inferences classified it as PaBV-2. The nucleotide identity of the sequenced strain ranged from 88.3% to 90.3% against genotype PaBV-2 and from 80.2% to 84.4% against other genotypes. Selective pressure analysis detected signs of episodic diversifying selection in both the N and M genes. No recombination events were detected. Phylodynamic analysis estimated the time to the most recent common ancestor (TMRCA) as the year 1758 for genotype PaBV-2 and the year 1049 for the Orthobornavirus alphapsittaciforme species. Substitution rates were estimated at 2.73 × 10−4 and 4.08 × 10−4 substitutions per year per site for N and M, respectively. The analysis of population dynamics showed a progressive decline in the effective population size during the last century. Timescale phylogeographic analysis revealed a potential South American ancestor as the origin of genotypes 1, 2, and 8. These results contribute to our knowledge of the evolutionary origin, diversity, and dynamics of PaBVs in South America and the world. Additionally, it highlights the importance of further studies in captive Psittaciformes and the potential impact on endangered wild birds. Full article
(This article belongs to the Special Issue General Epidemiology of Animal Viruses)
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