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26 pages, 3652 KB  
Article
Enhancing Resilience in Semi-Arid Smallholder Systems: Synergies Between Irrigation Practices and Organic Soil Amendments in Kenya
by Deborah M. Onyancha, Stephen M. Mureithi, Nancy Karanja, Richard N. Onwong’a and Frederick Baijukya
Sustainability 2026, 18(2), 955; https://doi.org/10.3390/su18020955 (registering DOI) - 17 Jan 2026
Abstract
Smallholder farmers in semi-arid regions worldwide face persistent water scarcity, declining soil fertility, and increasing climate variability, which constrain food production. This study investigated soil and water management practices and their effects on soil health, crop productivity, and adoption among smallholder vegetable farmers [...] Read more.
Smallholder farmers in semi-arid regions worldwide face persistent water scarcity, declining soil fertility, and increasing climate variability, which constrain food production. This study investigated soil and water management practices and their effects on soil health, crop productivity, and adoption among smallholder vegetable farmers in a semi-arid area in Kenya. A mixed-methods approach was employed, combining survey data from 397 farmers with a randomized field experiment. Results showed that hand watering (88.7%) and manure application (95.5%) were prevalent, while only 5.7% of farmers used drip irrigation. Compost and mulch treatments significantly improved soil organic carbon (p = 0.03), available water capacity (p = 0.01), and gravimetric moisture content (p = 0.02), with soil moisture conservation practices strongly correlated with higher yields in leafy green vegetables (R = 0.62). Despite these benefits, adoption was hindered by high water costs (42.6%) and unreliable sources (25.7%). Encouragingly, 96.2% of respondents expressed willingness to pay for improved water systems if affordable and dependable. The findings stress the need for integrated water–soil strategies supported by inclusive policy, infrastructure investment, and gender-responsive training to enhance resilience and productivity in smallholder farming under water-scarce conditions across sub-Saharan Africa and other regions globally, contributing to global sustainability targets such as SDG 6, 12 and 15. Full article
(This article belongs to the Section Development Goals towards Sustainability)
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18 pages, 950 KB  
Article
Selected Essential Oils Act as Repellents Against the House Cricket, Acheta domesticus
by Torben K. Heinbockel, Rasha O. Alzyoud, Shazia Raheel and Vonnie D. C. Shields
Insects 2026, 17(1), 106; https://doi.org/10.3390/insects17010106 - 16 Jan 2026
Abstract
The house cricket, Acheta domesticus, is found globally. It is an agricultural pest causing economic damage to a wide variety of crops including cereal seedlings, vegetable crops, fruit plants, and stored grains. Additionally, crickets act as mechanical vectors of pathogens by harboring [...] Read more.
The house cricket, Acheta domesticus, is found globally. It is an agricultural pest causing economic damage to a wide variety of crops including cereal seedlings, vegetable crops, fruit plants, and stored grains. Additionally, crickets act as mechanical vectors of pathogens by harboring bacteria, fungi, viruses, and toxins, causing foodborne illnesses. They can contaminate stored grains, packaged foods, or animal feed due to deposition of their feces, lowering the quality of the food and creating food safety risks. Synthetic insect repellents, such as pyrethroids and carbamates, have been used previously in integrated pest management practices to control crickets. Though successful as repellents, they have been associated with health and environmental risks and concerns. The use of organic green repellents, such as plant essential oils, may be a viable alternative in pest management practices. In this study, we tested the effects of 27 plant-based essential oils on the behavior of A. domesticus. A. domesticus were introduced into an open arena to allow them unrestricted movement. A transparent plastic bottle containing an essential oil treatment was placed in the arena to allow voluntary entry by the crickets. Following a predetermined observation period, the number of crickets that entered the bottle was recorded, and percent entry was calculated as the proportion of individuals inside the bottle relative to the total number in the arena. Analysis of the percentage entry into the bottles allowed for a comparative assessment of repellency of the selected essential oils examined in this study. Essential oils that elicited high levels of entry into the bottle were categorized as having weak or no repellency, while those that demonstrated reduced entry were classified as moderate or strong repellents. Our results indicated that A. domesticus responded with strong repellent behavior to nearly half of the essential oils tested, while four essential oils and two synthetic repellents evoked no significant repellent responses. Four strong repellent essential oils, namely peppermint, rosemary, cinnamon, and lemongrass, were tested at different concentrations and showed a clear dose-dependent repellent effect. The results suggest that selected essential oils can be useful in the development of more natural “green” insect repellents. Full article
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22 pages, 2580 KB  
Article
Variation in Soil Microbial Carbon Utilization Patterns Along a Forest Successional Series in a Degraded Wetland of the Sanjiang Plain
by Zhaorui Liu, Wenmiao Pu, Kaiquan Zhang, Rongze Luo, Xin Sui and Mai-He Li
Diversity 2026, 18(1), 48; https://doi.org/10.3390/d18010048 - 16 Jan 2026
Abstract
The Sanjiang Plain hosts the largest freshwater wetland in Northeastern China and plays a critical role in regional climate stability. However, climate change and human activities have degraded the wetland, forming a successional gradient from the original flooded wetland to dry shrub and [...] Read more.
The Sanjiang Plain hosts the largest freshwater wetland in Northeastern China and plays a critical role in regional climate stability. However, climate change and human activities have degraded the wetland, forming a successional gradient from the original flooded wetland to dry shrub and forest vegetation with a lower ground water level. This degradation has altered soil microbial structure and functions, reducing ecological and socio-economic benefits. Along this successional gradient, we used Biolog-ECO plates combined with soil enzyme assays (catalase, urease, sucrase, and acid phosphatase) to assess the dynamics of microbial carbon metabolic activity, measured by average well color development (AWCD). The results showed a systematic decline in AWCD values with advancing succession, revealing a pronounced reduction in overall microbial metabolic activity during wetland degradation. This trend correlated with loss of soil moisture, organic carbon, and nitrogen nutrients. Microbial communities in early successional wetland stages (i.e., original natural wetland and wetland edge) preferred labile carbon sources (e.g., carbohydrates, amino acids), while forested stages favored relatively more structural (e.g., polymers, phenolic compounds). These findings indicate that vegetation succession regulates microbial carbon metabolism by modifying soil physicochemical properties, providing insights for wetland restoration. Full article
(This article belongs to the Special Issue Microbial Diversity in Different Environments)
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27 pages, 11839 KB  
Article
Impact of Tropical Climate Anomalies on Land Cover Changes in Sumatra’s Peatlands, Indonesia
by Agus Dwi Saputra, Muhammad Irfan, Mokhamad Yusup Nur Khakim and Iskhaq Iskandar
Sustainability 2026, 18(2), 919; https://doi.org/10.3390/su18020919 - 16 Jan 2026
Abstract
Peatlands play a critical role in global and regional climate regulation by functioning as long-term carbon sinks, regulating hydrology, and modulating land–atmosphere energy exchange. Intact peat ecosystems store large amounts of organic carbon and stabilize local climate through high water retention and evapotranspiration, [...] Read more.
Peatlands play a critical role in global and regional climate regulation by functioning as long-term carbon sinks, regulating hydrology, and modulating land–atmosphere energy exchange. Intact peat ecosystems store large amounts of organic carbon and stabilize local climate through high water retention and evapotranspiration, whereas peatland degradation disrupts these functions and can transform peatlands into significant sources of greenhouse gas emissions and climate extremes such as drought and fire. Indonesia contains approximately 13.6–40.5 Gt of carbon, around 40% of which is stored on the island of Sumatra. However, tropical peatlands in this region are highly vulnerable to climate anomalies and land-use change. This study investigates the impacts of major climate anomalies—specifically El Niño and positive Indian Ocean Dipole (pIOD) events in 1997/1998, 2015/2016, and 2019—on peatland cover change across South Sumatra, Jambi, Riau, and the Riau Islands. Landsat 5 Thematic Mapper and Landsat 8 Operational Land Imager/Thermal Infrared Sensor imagery were analyzed using a Random Forest machine learning classification approach. Climate anomaly periods were identified using El Niño-Southern Oscillation (ENSO) and IOD indices from the National Oceanic and Atmospheric Administration. To enhance classification accuracy and detect vegetation and hydrological stress, spectral indices including the Normalized Difference Vegetation Index (NDVI), Modified Soil Adjusted Vegetation Index (MSAVI), Normalized Difference Water Index (NDWI), and Normalized Difference Drought Index (NDDI) were integrated. The results show classification accuracies of 89–92%, with kappa values of 0.85–0.90. The 2015/2016 El Niño caused the most severe peatland degradation (>51%), followed by the 1997/1998 El Niño (23–38%), while impacts from the 2019 pIOD were comparatively limited. These findings emphasize the importance of peatlands in climate regulation and highlight the need for climate-informed monitoring and management strategies to mitigate peatland degradation and associated climate risks. Full article
(This article belongs to the Special Issue Sustainable Development and Land Use Change in Tropical Ecosystems)
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28 pages, 765 KB  
Article
Long-Term Effects of Organo-Mineral Fertilization on Floristic Composition and Biodiversity in High Nature Value Mountain Grasslands of the Apuseni Mountains (Romania)
by Ioana Ghețe, Claudiu Șerban and Alexandru Ghețe
Plants 2026, 15(2), 271; https://doi.org/10.3390/plants15020271 - 16 Jan 2026
Abstract
This study evaluated the long-term effects of organo-mineral fertilization on floristic diversity, species diversity, and vegetation structure in an HNV grasslands of the Apuseni Mountains. The experiment included five fertilization variants (control, organic, organo-mineral, mineral, and intensive organo-mineral), applied over a period of [...] Read more.
This study evaluated the long-term effects of organo-mineral fertilization on floristic diversity, species diversity, and vegetation structure in an HNV grasslands of the Apuseni Mountains. The experiment included five fertilization variants (control, organic, organo-mineral, mineral, and intensive organo-mineral), applied over a period of more than 15 years. Floristic diversity was assessed using a modified Braun–Blanquet method and multivariate methods—cluster analysis, principal coordinate analysis (PCoA), MRPP procedure, and indicator species analysis (ISA). Our analysis showed a trophic gradient, from oligotrophic Festuca rubra grasslands to mesotrophic (Agrostis capillaris–Trisetum flavescens) and eutrophic (Agrostis capillaris–Centaurea pseudophrygia) communities, depending on the intensity of organo-mineral fertilization applied. Moderate organo-mineral fertilization maintained a balanced floristic diversity and higher Shannon and Simpson indices compared to variants fertilized only with mineral inputs. Organo-mineral inputs improved soil fertility and ecosystem resilience, supporting soil microbiota activity and reducing nutrient losses. Intensive mineral fertilization led to a reduction in floristic richness and the dominance of nitrophilic species. This study demonstrates that moderate organo-mineral fertilization (≤10 t ha−1 manure combined with N50P25K25) provides an optimal balance between grassland productivity and biodiversity conservation, offering practical guidance for the sustainable management of High Nature Value mountain grasslands. Full article
(This article belongs to the Section Plant Ecology)
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18 pages, 4114 KB  
Article
Hydrological Changes Drive the Seasonal Vegetation Carbon Storage of the Poyang Lake Floodplain Wetland
by Zili Yang, Shaoxia Xia, Houlang Duan and Xiubo Yu
Remote Sens. 2026, 18(2), 276; https://doi.org/10.3390/rs18020276 - 14 Jan 2026
Viewed by 90
Abstract
Wetlands are a critical component of the global biogeochemical cycle and have great potential for carbon sequestration under the changing climate. However, previous studies have mainly focused on the dynamics of soil organic carbon while paying little attention to the vegetation carbon storage [...] Read more.
Wetlands are a critical component of the global biogeochemical cycle and have great potential for carbon sequestration under the changing climate. However, previous studies have mainly focused on the dynamics of soil organic carbon while paying little attention to the vegetation carbon storage in wetlands. Poyang Lake is the largest freshwater lake in China, where intra-annual and inter-annual variations in water levels significantly affect the vegetation carbon storage in the floodplain wetland. Therefore, we assessed the seasonal distribution and carbon storage of six typical plant communities (Arundinella hirta, Carex cinerascens, Miscanthus lutarioriparius, Persicaria hydropiper, Phalaris arundinacea, and Phragmites australis) in Poyang Lake wetlands from 2019 to 2024 based on field surveys, the literature, and remote sensing data. Then, we used 16 preseason meteorological and hydrological variables for two growing seasons to investigate the impacts of environmental factors on vegetation carbon storage based on four correlation and regression methods (including Pearson and partial correlation, ridge, and elastic net regression). The results show that the C. cinerascens community was the most dominant contributor to vegetation carbon storage, occupying 12.68% to 44.22% of the Poyang Lake wetland area. The vegetation carbon storage in the Poyang Lake wetland was significantly (p < 0.01) higher in spring (87.75 × 104 t to 239.10 × 104 t) than in autumn (77.32 × 104 t to 154.78 × 104 t). Water body area emerged as a key explanatory factor, as it directly constrains the spatial extent available for vegetation colonization and growth by alternating inundation and exposure. In addition, an earlier start or end to floods could both enhance vegetation carbon storage in spring or autumn. However, preseason precipitation and temperature are negative to carbon storage in spring but exhibited opposite effects in autumn. These results assessed the seasonal dynamics of dominant vegetation communities and helped understand the response of the wetland carbon cycle under the changing climate. Full article
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15 pages, 7992 KB  
Article
Impact of Introduced Spatholobus suberectus and Dalbergia balansae on Soil N Accumulation and P Depletion in Chinese Fir Plantations
by Qiwu Sun, Chai Lin, Lingyu Hou, Yuhong Dong, Shumeng Wei, Xiangrong Liu and Qian Wang
Forests 2026, 17(1), 110; https://doi.org/10.3390/f17010110 - 13 Jan 2026
Viewed by 73
Abstract
The introduction of understory vegetation can increase species diversity and potential productivity in forest ecosystems, which is considered a viable solution to the global problem of declining soil quality caused by deteriorating climatic conditions and human activities. The forest management model that achieves [...] Read more.
The introduction of understory vegetation can increase species diversity and potential productivity in forest ecosystems, which is considered a viable solution to the global problem of declining soil quality caused by deteriorating climatic conditions and human activities. The forest management model that achieves economic and ecological benefits by introducing legumes is widely used. However, there have been rare studies on the effects of introducing legumes under Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.) plantations on soil nutrient content and microbial diversity. In this study, we investigated the soil chemical properties, microbial diversity, and enzymatic activities in Chinese fir plantations introduced with Spatholobus suberectus (SRS), Dalbergia balansae (DRS), both species (BS), and in a monoculture plantation (CK). As indicated by the results, soil pH, total phosphorus (TP), available phosphorus (AP), available potassium (AK), urease activities, and the ratios of C:P and N:P decreased in SRS, DRS, and BS treatments, whereas soil organic carbon (SOC), total nitrogen (TN), available nitrogen (AN), phosphatase, and sucrase activities increased. The decrease in soil pH and the effects of Chytridiomycota and Glomeromycota elevated phosphatase activity. Accordingly, the mineralization rate of soil phosphorus increased. This increase enhanced phosphorus availability and the risk of loss, resulting in the depletion of soil phosphorus and the inhibition of urease activity. The findings of this study reveal that the introduction of legumes effectively improves the soil microbial community and nitrogen accumulation in Chinese fir plantations while resulting in phosphorus depletion, highlighting the need for balanced nutrient management. Full article
(This article belongs to the Section Forest Soil)
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19 pages, 357 KB  
Review
Alicyclobacillus acidoterrestris Eradication Strategies with Physical Methods and Natural-Origin Substances Intended for Food Industry
by Agnieszka Tyfa and Alina Kunicka-Styczyńska
Molecules 2026, 31(2), 257; https://doi.org/10.3390/molecules31020257 - 12 Jan 2026
Viewed by 202
Abstract
Alicyclobacillus acidoterrestris is an acidothermophilic bacterium considered a significant challenge to the food industry, particularly in the production of fruit juices and concentrates. Its ability to survive pasteurization and form spores and biofilms makes it a persistent contaminant that can spoil products and [...] Read more.
Alicyclobacillus acidoterrestris is an acidothermophilic bacterium considered a significant challenge to the food industry, particularly in the production of fruit juices and concentrates. Its ability to survive pasteurization and form spores and biofilms makes it a persistent contaminant that can spoil products and generate off-flavors even during product storage. Recent studies have increasingly focused on developing new strategies to eliminate both vegetative cells and biofilms, with special attention on natural compounds such as plant extracts, essential oils and antimicrobial metabolites. These natural agents offer promising alternatives for controlling A. acidoterrestris and might contribute to improvement in safety and quality of juice products. This article presents a comprehensive overview of current strategies for controlling Alicyclobacillus species in food processing environments, with an emphasis on A. acidoterrestris as a major spoilage organism in the fruit juice industry. It summarizes the established physical and chemical control methods, as well as highlights emerging novel approaches involving natural-origin antimicrobial compounds considered useful for mitigating Alicyclobacillus contamination. Full article
(This article belongs to the Special Issue Antibacterial Agents from Natural Source, 3rd Edition)
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17 pages, 857 KB  
Article
Life Cycle Assessment of Laboratory Analytical Workflows for Microplastics Quantification in Environmental Matrices: Sargassum and Seagrass Approach
by Ramón Fernando Colmenares-Quintero, Laura Stefania Corredor-Muñoz, Juan Carlos Colmenares-Quintero and Sara Piedrahita-Rodriguez
Processes 2026, 14(2), 258; https://doi.org/10.3390/pr14020258 - 12 Jan 2026
Viewed by 159
Abstract
Microplastic quantification in marine vegetated ecosystems remains analytically demanding, yet little is known about the environmental footprint of the laboratory procedures required to isolate and measure these particles. This study applies Life Cycle Assessment (LCA) to laboratory analytical workflows for microplastics quantification, focusing [...] Read more.
Microplastic quantification in marine vegetated ecosystems remains analytically demanding, yet little is known about the environmental footprint of the laboratory procedures required to isolate and measure these particles. This study applies Life Cycle Assessment (LCA) to laboratory analytical workflows for microplastics quantification, focusing exclusively on sample preparation and analytical procedures rather than natural environmental absorption or fate processes, in two ecologically relevant matrices: (i) pelagic algae (Sargassum) and (ii) seagrass biomass. Using the openLCA 2.5 and the ReCiPe Midpoint (H) v1.13 methods, the analysis integrates foreground inventories of digestion, filtration, drying, and spectroscopic identification, combined with background datasets from OzLCI2019, ELCD 3.2 and USDA. Results show substantially higher impacts for the algae scenario, particularly for climate change, human toxicity, ionising radiation and particulate matter formation, largely driven by longer digestion times, increased reagent use and higher energy demand during sample pre-treatment. Conversely, the seagrass scenario exhibited lower burdens per functional unit due to reduced organic complexity and shorter laboratory processing requirements. These findings highlight the importance of matrix-specific methodological choices and the influence of background datasets on impact profiles. This study provides the first benchmark for the environmental performance of microplastic analytical workflows and underscores the need for harmonised, low-impact laboratory protocols to support sustainable monitoring of microplastic pollution in marine ecosystems. Full article
(This article belongs to the Section Environmental and Green Processes)
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25 pages, 3934 KB  
Article
Urban Heat Islands: Their Influence on Building Heating and Cooling Energy Demand Throughout Local Climate Zones
by Marta Lucas Bonilla, Cristina Nuevo-Gallardo, Jose Manuel Lorenzo Gallardo and Beatriz Montalbán Pozas
Urban Sci. 2026, 10(1), 43; https://doi.org/10.3390/urbansci10010043 - 11 Jan 2026
Viewed by 153
Abstract
The thermal influence of Urban Heat Islands (UHIs) is not limited to periods of high temperature but persists throughout the year. The present study utilizes hourly data collected over a period of one year from a network of hygrothermal monitoring stations with a [...] Read more.
The thermal influence of Urban Heat Islands (UHIs) is not limited to periods of high temperature but persists throughout the year. The present study utilizes hourly data collected over a period of one year from a network of hygrothermal monitoring stations with a high density, which were deployed across the city of Cáceres (Spain). The network was designed in accordance with the World Meteorological Organization’s guidelines for urban measurements (employing radiation footprints and surface roughness) and ensures representation of each Local Climate Zone (LCZ), characterized by those factors (such as building typology and density, urban fabric, vegetation, and anthropogenic activity, among others) that influence potential solar radiation absorption. The magnitude of the heat island effect in this city has been determined to be approximately 7 °C in summer and winter at the first hours of the morning. In order to assess the energy impact of UHIs, Cooling and Heating Degree Days (CDD and HDD) were calculated for both summer and winter periods across the different LCZs. Following the implementation of rigorous quality control procedures and the utilization of gap-filling techniques, the analysis yielded discrepancies in energy demand of up to 10% between LCZs within the city. The significance of incorporating UHIs into the design of building envelopes and climate control systems is underscored by these findings, with the potential to enhance both energy efficiency and occupant thermal comfort. This methodology is particularly relevant for extrapolation to larger and denser urban environments, where the intensification of UHI effects exerts a direct impact on energy consumption and costs. The following essay will provide a comprehensive overview of the relevant literature on the subject. Full article
(This article belongs to the Special Issue Urban Building Energy Analysis)
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24 pages, 4377 KB  
Article
Effects of Stratified Vegetation Volume on Understory Erosion and Soil Coarsening in the Red Soil Region of Southern China
by Yanzi He, Zhujun Gu, Qinghua Fu, Hui Yue, Gengen Lin, Jiasheng Wu, Guanghui Liao and Fei Wang
Land 2026, 15(1), 143; https://doi.org/10.3390/land15010143 - 10 Jan 2026
Viewed by 171
Abstract
Severe erosion persists in the red soil region of southern China despite dense vegetation. Stratified vegetation volume (SVV), which integrates horizontal and vertical vegetation density, better captures understory structure than fractional cover. Here, we established and surveyed 75 forest stands (10 m × [...] Read more.
Severe erosion persists in the red soil region of southern China despite dense vegetation. Stratified vegetation volume (SVV), which integrates horizontal and vertical vegetation density, better captures understory structure than fractional cover. Here, we established and surveyed 75 forest stands (10 m × 10 m) spanning an erosion-intensity gradient in Changting County, Fujian Province, China. Within each stand, soil was sampled by depth (0–20 cm), and living and dead vegetation volumes in the canopy, shrub–herb, and litter layers were quantified to derive SVV. Relative to slightly eroded soils, moderate and severe erosion reduced the soil water content by 38–41% and soil organic matter by 19–34%, while increasing bulk density by 25–30% and pH by 6–8%. Severe erosion increased the sand content by 20–31% and decreased the gravel content by ≤15%. SVV declined sharply with erosion, with the largest loss in the shrub–herb layer (66–97%). Erosion was most strongly associated with shrub–herb SVV, soil water content, organic matter, and bulk density (r = 0.5–0.6, p < 0.05). The shrub–herb layer was the key component resisting surface erosion. Overall, understory degradation accelerates erosion and soil coarsening, reinforcing a constrained vegetation–soil system; restoring native shrubs and grasses, coupled with targeted canopy thinning, may improve soil and water conservation. Full article
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17 pages, 2645 KB  
Article
Identification of a GA-Related Cis-Element Regulating Male Peduncle Elongation in Papaya
by Julie Nguyen-Edquilang, Jingjing Yue and Ray Ming
Plants 2026, 15(2), 209; https://doi.org/10.3390/plants15020209 - 9 Jan 2026
Viewed by 197
Abstract
Papaya (Carica papaya L.) is a tropical trioecious crop with males, hermaphrodites, and females. There is a sequence difference between male and hermaphrodite SHORT VEGETATIVE PHASE (CpSVP), making SVP a strong candidate gene controlling peduncle length in papaya. To study [...] Read more.
Papaya (Carica papaya L.) is a tropical trioecious crop with males, hermaphrodites, and females. There is a sequence difference between male and hermaphrodite SHORT VEGETATIVE PHASE (CpSVP), making SVP a strong candidate gene controlling peduncle length in papaya. To study the spatial and temporal expression and function of CpSVP in Arabidopsis, we constructed a translation fusion structure based on the native promoter of SVP in papaya. In the 2kb promoter, strong GUS staining was observed in the floral organs and pedicels. In the 1kb promoter, there is no GUS expression in the floral organs, and it is barely detectable in pedicels. Removal of a GA responsive P-box cis-element in the 1kb promoter enhanced expression in the floral organs and pedicels, and elongated pedicels. In the transgenic Arabidopsis plants expressing the male CpSVP allele, there was an increase in pedicel length, but not in the plants expressing the hermaphrodite CpSVP allele. CpSVP-Y is capable of pedicel elongation, with no defects in reproductive organs. These findings imply that CpSVP-Y and this P-box play a major role in peduncle elongation but not sex determination in papaya. Full article
(This article belongs to the Section Plant Development and Morphogenesis)
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28 pages, 8604 KB  
Article
The Proteome of Dictyostelium discoideum Across Its Entire Life Cycle Reveals Sharp Transitions Between Developmental Stages
by Sarena Banu, P. V. Anusha, Pedro Beltran-Alvarez, Mohammed M. Idris, Katharina C. Wollenberg Valero and Francisco Rivero
Proteomes 2026, 14(1), 3; https://doi.org/10.3390/proteomes14010003 - 8 Jan 2026
Viewed by 290
Abstract
Background: Dictyostelium discoideum is widely used in developmental and evolutionary biology due to its ability to transition from a single cell to a multicellular organism in response to starvation. While transcriptome information across its life cycle is widely available, only early-stage data exist [...] Read more.
Background: Dictyostelium discoideum is widely used in developmental and evolutionary biology due to its ability to transition from a single cell to a multicellular organism in response to starvation. While transcriptome information across its life cycle is widely available, only early-stage data exist at the proteome level. This study characterizes and compares the proteomes of D. discoideum cells at the vegetative, aggregation, mound, culmination and fruiting body stages. Methods: Samples were collected from cells developing synchronously on nitrocellulose filters. Proteins were extracted and digested with trypsin, and peptides were analyzed by liquid chromatography–tandem mass spectrometry. Data were processed using Proteome Discoverer™ for protein identification and label-free quantification. Results: A total of 4502 proteins were identified, of which 1848 (41%) were present across all stages. Pairwise comparisons between adjacent stages revealed clear transitions, the largest ones occurring between the culmination and fruiting body and between the fruiting body and vegetative stage, involving 29% and 52% of proteins, respectively. Hierarchical clustering assigned proteins to one of nine clusters, each displaying a distinct pattern of abundances across the life cycle. Conclusions: This study presents the first complete developmental proteomic time series for D. discoideum, revealing changes that contribute to multicellularity, cellular differentiation and morphogenesis. Full article
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19 pages, 2648 KB  
Article
Connection Between the Microbial Community and the Management Zones Used in Precision Agriculture Cultivation
by Mátyás Cserháti, Dalma Márton, Ádám Csorba, Milán Farkas, Neveen Almalkawi, Ádám Hegyi, Balázs Kriszt and Tamás Szegi
Agriculture 2026, 16(2), 156; https://doi.org/10.3390/agriculture16020156 - 8 Jan 2026
Viewed by 160
Abstract
In precision agriculture, the delineation of Management Zones (MZs) is essential for optimizing input use efficiency and site-specific nutrient management. MZs are established based on spatial variability derived from remote sensing data—such as Normalized Difference Vegetation Index (NDVI) from satellite or UAV-based imagery—and [...] Read more.
In precision agriculture, the delineation of Management Zones (MZs) is essential for optimizing input use efficiency and site-specific nutrient management. MZs are established based on spatial variability derived from remote sensing data—such as Normalized Difference Vegetation Index (NDVI) from satellite or UAV-based imagery—and yield maps collected during harvest. However, the microbial community composition of the soil is often overlooked in MZ delineation. To address this gap, we investigated the soil bacterial community structure across different MZs in an arable field. The zones were delineated using NDVI data, soil profiles were described, and bulk soil samples were collected. Soil physicochemical parameters were analyzed in parallel with 16S rRNA gene amplicon sequencing to characterize bacterial community composition and diversity. The results demonstrated that soil texture and soil organic matter content were the primary drivers influencing bacterial community structure across the field. Moreover, patterns in microbial composition aligned closely with MZ delineations, indicating that microbial profiles could aid in better understanding and supporting the nutrient management practices. Our findings suggest that soil microbiological data can enhance the stability and biological relevance of MZ definitions, thereby improving resource allocation, soil health management, and overall sustainability in precision farming systems. Full article
(This article belongs to the Section Artificial Intelligence and Digital Agriculture)
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18 pages, 18978 KB  
Article
The Gut Microbiome of the Goitered Gazelle Enables Plasticity by Responding to Environmental Factors in the Qaidam Basin
by Qing Zhao, Bin Li, Juan Ma, Jiaxin Wei and Wen Qin
Biology 2026, 15(2), 118; https://doi.org/10.3390/biology15020118 - 7 Jan 2026
Viewed by 172
Abstract
The Qaidam Basin on the Qinghai–Tibet Plateau is an extreme arid environment, posing severe survival challenges. The goitered gazelle (Gazella subgutturosa) is a keystone species in this fragile ecosystem, yet the ecological role of its gut microbiota and its associations with [...] Read more.
The Qaidam Basin on the Qinghai–Tibet Plateau is an extreme arid environment, posing severe survival challenges. The goitered gazelle (Gazella subgutturosa) is a keystone species in this fragile ecosystem, yet the ecological role of its gut microbiota and its associations with environmental drivers remain poorly understood. We collected fecal samples from gazelles across seven regions of the basin. Metagenomic sequencing was employed to characterize the gut microbiome. Statistical analyses (Mantel tests, multiple regression on matrices, co-occurrence networks) were used to link microbial composition and function with key environmental factors. The gut microbiota was dominated by fiber-degrading phyla (Firmicutes, Bacteroidota) and enriched in metabolic pathways, aligning with a high-fiber diet. Regarding environmental drivers of gut microbial composition variations, isothermality and soil organic carbon were significant predictors, likely via vegetation and environmental inoculation. Regarding environmental drivers of gut microbial function variations, winter solar radiation was uniquely associated with metabolic function without altering microbial composition, suggesting a functional plasticity—the capacity to shift metabolic profiles independently of taxonomic turnover—in response to environmental variation. The gut microbiota of the goitered gazelle exhibits a stable core composition alongside environmentally responsive functional modules. This suggests the microbiome may serve as a significant mediator of host resilience, highlighting adaptation as a dynamic interplay between host, microbiome, and environment. These insights are crucial for microbiome-assisted conservation. Full article
(This article belongs to the Section Microbiology)
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