Search Results (3,584)

Cucumis sativus L. is a globally important vegetable crop that occupies a significant position in protected agriculture due to its high nutritional value, short cultivation cycle, and considerable economic benefits. As a cold-sensitive plant, however, cucumber is highly susceptible to low-temperature stress. which can severely inhibit growth and development, hinder seed germination, and reduce photosynthetic efficiency. Under low-temperature stress, cucumber plants typically incur damage to cellular membrane structures, experience an accumulation of reactive oxygen species (ROS), exhibit a disruption in hormonal homeostasis, and suffer from the inhibition of pivotal metabolic pathways. In response, cucumber plants activate an array of resistance mechanisms, encompassing osmotic adjustment, reinforcement of the antioxidant system, and modulation of cold-responsive gene expression. This review summarizes the physiological and molecular mechanisms underlying cucumber’s response to low-temperature stress, aiming to provide effective strategies for improving abiotic stress resistance. The main findings are as follows: (1) Low-temperature stress damages cucumber cell membranes, suppresses photosynthesis and respiration, suppresses water and nutrient uptake/transport, and suppresses growth retardation. (2) Cucumber counters these adverse effects by orchestrating the accumulation of osmoregulators (e.g., soluble sugars, proline), activating activation defenses (e.g., SOD, CAT), and rebalancing its phytohormone network (e.g., ABA, GA, SA, ethylene). (3) At the molecular level, cucumber activates low-temperature-responsive genes (e.g., COR, GoIS) through transcription factors such as CBF, MYB, and WRKY, thereby enhancing cold tolerance. (4) Application of exogenous protectants (e.g., hydrogen sulfide, melatonin, oligosaccharides) significantly improves cucumber’s low-temperature tolerance by modulating the antioxidant system, promoting osmoregulatory substances accumulation, and regulating hormone signaling pathways. Future research should focus on elucidating the molecular regulatory network in cucumber under low-temperature stress and developing gene editing with multi-omics techniques to advance the development of cold-resistant cultivars and cultivation practices. This study offers a scientific foundation for research on cucumber cold tolerance and proposes potential solutions to agricultural challenges in the context of global climate change. Full article

Drought stress significantly impairs plant growth and productivity, which triggers complex adaptive responses mediated by diverse gene families. Among these, the TOPLESS (TPL)/TPL-related (TPR) family of transcriptional corepressors plays a crucial role by recruiting epigenetic modifiers through interactions with EAR motif-containing proteins. However, genome-wide studies of this corepressor family and its associated regulatory networks with EAR motif-containing repressors remain limited. This study aimed to characterize the TPL/TPR transcriptional corepressor family in Populus ussuriensis Kom., elucidate their regulatory networks with EAR motif-containing repressors, and validate their functional roles in drought stress adaptation. To this end, we identified 21 TPL/TPR genes in P. ussuriensis (PuTPLs), classified them into five subfamilies, and found they are evolutionarily conserved with Arabidopsis thaliana and Populus trichocarpa, harboring characteristic CTLH and WD40 domains. Given that TPL/TPR proteins are recruited by transcription factors containing repression motifs, we constructed a putative TPL/TPR-EAR motif interaction network representing a core paradigm of negative regulation. Expression profiling under drought stress showed significant upregulation of most PuTPLs in a tissue-specific and temporal manner. Functional validation using transgenic P. ussuriensis lines overexpressing five PuTPLs demonstrated enhanced drought tolerance, evidenced by reduced electrolyte leakage and malondialdehyde content and increased proline accumulation. Our study provides the first comprehensive genome-wide analysis of the TPL/TPR family in P. ussuriensis, establishes a core EAR-mediated negative regulatory network, and validates the critical role of these genes in drought stress adaptation, providing valuable resources for future mechanistic research and breeding of stress-resistant trees. Full article

Populus koreana emits a wide array of volatile organic compounds (VOCs) with potential ecological functions; however, the tissue-specific distribution and underlying regulatory mechanisms of these compounds remain poorly understood. This study employed an integrated approach combining gas chromatography-mass spectrometry (GC-MS)-based metabolomics and RNA-seq to systematically profile VOC composition and gene expression in terminal buds, stems and leaves of P. koreana. A total of 207 VOCs were identified, predominantly terpenes and aromatic compounds, exhibiting distinct tissue-specific accumulation patterns. Terminal buds were enriched in limonene and caryophyllene, while leaves showed higher concentrations of alcohols and phenolic aldehydes. Transcriptomic analysis revealed 12,733 differentially expressed genes (DEGs) among the three organs, with substantial enrichment in terpenoid and phenylpropanoid biosynthetic pathways. Notably, key upregulated genes in buds, including TPS21 and PAL1, correlated with observed VOC profiles. Weighted gene co-expression network analysis (WGCNA) further identified 6365 genes strongly associated with bud-specific VOC biosynthesis. Integrated omics analyses indicated coordinated regulation of phenylalanine metabolism and transcription factors in VOC production. These findings illuminate the molecular mechanisms underlying tissue-specific VOC accumulation in P. koreana, enhancing our understanding of metabolic specialization and ecological adaptation in woody plants. Full article

Transposable elements (TEs), once regarded as genomic “junk,” are now recognized as powerful regulators of gene expression, genome stability, and innate immunity. In the context of neurodegeneration, particularly Amyotrophic Lateral Sclerosis (ALS), accumulating evidence implicates TEs as active contributors to disease pathogenesis. ALS is a fatal motor neuron disease with both sporadic and familial forms, linked to genetic, epigenetic, and environmental factors. While coding mutations explain a subset of cases, advances in long-read sequencing and epigenomic profiling have unveiled the profound influence of non-coding regions—especially retrotransposons such as LINE-1, Alu, and SVA—on ALS onset and progression. TEs may act through multiple mechanisms: generating somatic mutations, disrupting chromatin architecture, modulating transcriptional networks, and triggering sterile inflammation via innate immune pathways like cGAS-STING. Their activity is normally repressed by epigenetic regulators, including DNA methylation, histone modifications, and RNA interference pathways; however, these controls are compromised in ALS. Taken together, these insights underscore the translational potential of targeting transposable elements in ALS, both as a source of novel biomarkers for patient stratification and disease monitoring, and as therapeutic targets whose modulation may slow neurodegeneration and inflammation. This review synthesizes the current knowledge of TE biology in ALS; integrates findings across molecular, cellular, and systems levels; and explores the therapeutic potential of targeting TEs as modulators of neurodegeneration. Full article

Peanut (Arachis hypogaea L.) is an important oil and cash crop, but its growth and productivity are severely constrained by low-temperature stress. Growth-regulating factors (GRFs) are plant-specific transcription factors involved in development and stress responses, yet their roles in peanut remain poorly understood. In this study, we identified AhGRF3b as a direct target of ahy-miR396 using degradome sequencing, which demonstrated precise miRNA-mediated cleavage sites within the AhGRF3b transcript. Expression profiling confirmed that ahy-miR396 suppresses AhGRF3b via post-transcriptional cleavage rather than translational repression. Functional analyses showed that overexpression of AhGRF3b in Arabidopsis thaliana promoted leaf expansion by enhancing cell proliferation. Specifically, leaf length, width, and petiole length increased by 104%, 22%, and 28%, respectively (p < 0.05). Under cold stress (0 °C for 7 days), transgenic lines (OE-2 and OE-6) exhibited significantly better growth than Col-0, with fresh weight increased by 158% and 146%, respectively (p < 0.05). Effect size analysis further confirmed these differences (Cohen’s d = 11.6 for OE-2 vs. Col-0; d = 6.3 for OE-6 vs. Col-0). Protein–protein interaction assays, performed using the yeast two-hybrid (Y2H) system and 3D protein–protein docking models, further supported that AhGRF3b interacts with Catalase 1 (AhCAT1), vacuolar cation/proton exchanger 3 (AhCAX3), probable polyamine oxidase 4 (AhPAO4), and ACT domain-containing protein 11 (AhACR11), which are involved in reactive oxygen species (ROS) scavenging and ion homeostasis. These interactions were associated with enhanced CAT and PAO enzymatic activities, reduced ROS accumulation, and upregulation of stress-related genes under cold stress. These findings suggest that the ahy-miR396/AhGRF3b module plays a potential regulatory role in leaf morphogenesis and cold tolerance, providing valuable genetic resources for breeding cold-tolerant peanut varieties. Full article

Microbial fermentation diversely modulates the bioactivity of green tea extracts (GTE), but its effects on anti-aging potential remain under-explored. This study investigated the effects of liquid-state fermentation by Aspergillus niger RAF106 on the anti-aging properties of GTE from Biluochun and identified its longevity-promoting metabolites. The unfermented GTE used herein showed no or limited effects, but the four-day fermented tea extracts (GTE-A4) significantly extended the mean lifespan in Caenorhabditis elegans, enhanced motility and stress resistance, and improved mitochondrial function and antioxidant properties, while reducing lipid accumulation and oxidative damage. The pro-longevity effect depended on insulin/IGF-1, MAPK, and p53 pathways and required transcription factors DAF-16 and HSF-1. Fermentation periods shorter or longer than 4 days led to reduced efficacy. Fermentation with RAF106 dynamically altered chemical composition and induced the enrichment of various longevity-promoting metabolites in GTE-A4, including proanthocyanidin A2, aromadendrin, and dalbergioidin—all newly identified as anti-aging agents. These findings demonstrate that RAF106 fermentation improves the anti-aging potential of green tea and provides a scientific basis for using precision fermentation to develop advanced anti-aging functional ingredients from tea extracts. Full article

Salt-tolerance improvement of tomatoes is largely a task of modern selection and plant molecular genetics because of cultivation on dry and irrigated lands under salt stress. To reveal the salt resistance gene, we need quantitative real-time polymerase chain reaction (qRT-PCR) normalization through reference genes analysis. Sometimes, housekeeping gene expression changes in response to various stress factors, especially salinity. In this manuscript, we evaluated expression changes of elongation factor 1α X53043.1 (EF1α), actin BT013707.1 (ACT), ubiquitin NM_001346406.1 (UBI), nuclear transcript factor XM_026030313.2 (NFT-Y), β-tubulin NM_001247878.2 (TUB), glyceraldehyde-3 phosphate dehydrogenase NM_001247874.2 (GAPDH), phosphatase 2A catalytic subunit NM_001247587.2 (PP2a), and phosphoglycerate kinase XM_004243920.4 (PGK) in salt-sensitive Solanum lycopersicum L. YaLF line and salt tolerance Rekordsmen cv. under 100 mM NaCl. We also suggested potential correlations between relative water content (RWC), ion accumulation, and reference gene expression in tomato genotypes with contrasting salinity tolerance. We used geNorm, NormFinder, BestKeeper, ∆Ct, and RefFinder algorithms to establish a set of the most reliable tomato candidate genes. The most stable genes for YaLF tomatoes were ACT, UBI, TUB, and PP2a. Despite differences in ranks, the NFT-Y was present in Rekordsmen’s stable set. Full article

Background: As a key contributor to metabolic disorders, obesity is recognized as a critical global health challenge. Adipocyte differentiation depends on the mitotic clonal expansion (MCE) phase, which is controlled by oxidative balance and transcription factors like C/EBPβ. Sesaminol, a lignan derived from Sesamum indicum, has potent antioxidant properties. This study aimed to investigate whether sesaminol suppresses adipogenesis by modulating ROS signaling, MCE, and the Nrf2-ARE pathway. Methods: In the early period of adipogenic induction, 3T3-L1 preadipocytes received treatment with sesaminol. Adipogenic development was evaluated through Oil Red O staining together with the assay of GPDH activity. Assays of cell proliferation and expression of cell cycle-related proteins, along with ROS measurement, qRT-PCR, Western blotting, and immunofluorescence, were performed to evaluate the effects on oxidative stress, transcriptional regulation, and AMPK-Nrf2 signaling. Results: Sesaminol significantly inhibited lipid accumulation and GPDH activity without cytotoxicity. It suppressed MCE by inhibiting DNA synthesis and reducing the expression of cyclin E1/E2 and CDK2. Sesaminol decreased C/EBPβ expression and its nuclear localization, resulting in lower levels of C/EBPα and PPARγ. It also reduced intracellular ROS, promoted nuclear translocation of Nrf2, and upregulated antioxidant genes HO-1 and GCLC. AMPK phosphorylation was concurrently enhanced. Conclusions: Sesaminol inhibits early adipogenesis by suppressing ROS-mediated MCE and activating the AMPK-Nrf2-ARE signaling pathway, leading to downregulation of key adipogenic transcription factors. The present study supports the potential of sesaminol as an effective strategy for obesity prevention. Full article

Human T-cell leukemia virus type 1 (HTLV-1) is the causative agent of adult T-cell leukemia/lymphoma (ATL). The trans-activator protein Tax of HTLV-1 is thought to play a crucial role in the early-stage transformation of the virus-infected cells. Tax is a multi-functional protein and modulates cellular signaling pathways that promote proliferation and survival of HTLV-1-infected cells, primarily through the trans-activation of cellular target genes. Tax interacts with a variety of host cell factors including signal transducers and transcription factors, leading to the activation of transcription factors such as CREB, NF-κB, and SRF and activates both its own promoter and those of a variety of host cellular genes. Tax activates its own promoter mainly through CREB and host cellular genes through NF-κB, SRF, and CREB. Accumulating evidence indicates that the Tax-mediated trans-activation of target genes through NF-κB plays an essential role in the transformation of HTLV-1 infected cells. However, the repertoire of Tax target genes, especially those crucial for leukemogenesis, are not known in detail. In this review, we summarize transcriptional activation mechanisms and target genes of Tax, especially focusing on transformation, to facilitate understanding of the underlying mechanisms of leukemogenesis induced by HTLV-1 infection. Full article

Background: High-fat diet (HFD)-induced hepatic inflammation impairs liver function, promotes fibrosis, and may progress to hepatocellular carcinoma, thereby posing a significant threat to human health. Meanwhile, fermented whole grains have attracted growing attention owing to their diverse beneficial biological properties. Methods: In this study, we investigated the effects of co-fermented quinoa and black barley (FG) on HFD-induced chronic hepatic inflammation using male C57BL/6J mice. Results: FG intervention significantly attenuated excessive body weight gain and reduced hepatic adipose accumulation in HFD-fed mice. Furthermore, FG alleviated hepatic inflammation by downregulating the transcriptional and protein levels of tumor necrosis factor-α (TNF-α), interleukin-1β (IL-1β), and interleukin-6 (IL-6), as well as the transcriptional levels of toll-like receptor 4 (Tlr4), cluster of differentiation 14 (CD14), and myeloid differentiation primary response gene 88 (Myd88). Metabolomic analysis identified several hepatic and fecal metabolites, such as vitamin A and L-tryptophan, that were upregulated by FG treatment. The strong negative correlation of these metabolites with hepatic inflammatory markers suggests their role as putative mediators of FG’s anti-inflammatory action. Additionally, FG enhanced the relative abundances of probiotic taxa, including g_Lawsonibacter, g_Acetatifactor, and s_Bifidobacterium cricetid, and upregulated the microbial bile acid (BA) biosynthesis pathway. Notably, these enriched probiotics exhibited a positive correlation with the aforementioned fecal metabolites. Conclusions: Our findings suggest that FG has the potential to alleviate HFD-induced hepatic inflammation by restoring gut microbiota imbalance and reversing metabolic disorders. Full article

MicroRNAs (miRNAs) are critical regulators of gene expression in cancer biology and cardiovascular disease. miR-106b-5p, a member of the miR-106b-25 cluster, has been widely studied for its oncogenic activity in various malignancies. However, its role as a direct molecular driver of anthracycline-induced cardiotoxicity has only recently been uncovered. This finding highlights new therapeutic possibilities at the intersection of oncology and cardiovascular medicine. This review outlines the dual role of miR-106b-5p as a key modulator in both tumor progression and chemotherapy-induced cardiac dysfunction. miR-106b-5p is upregulated in numerous cancers—including breast, prostate, lung, gastric, colorectal, hepatocellular, and esophageal—and promotes tumorigenesis via suppression of tumor suppressors such as PTEN, BTG3, p21, and SMAD7, leading to activation of oncogenic pathways like PI3K/AKT and TGF-β. Importantly, we present the first evidence that miR-106b-5p is significantly upregulated in the myocardium in response to doxorubicin treatment, where it drives left ventricular dysfunction by targeting PR55α, a key regulator of PP2A activity. This pathway results in cytoplasmic HDAC4 accumulation, aberrant activation of the YY1 transcription factor, and upregulation of sST2, a biomarker linked to adverse cardiac remodeling and poor prognosis. In response, we developed AM106, a novel locked nucleic acid antagomir that silences miR-106 b-5p. Preclinical studies demonstrate that AM106 restores PR55α/PP2A activity, reduces sST2 expression, and prevents structural and functional cardiac damage without compromising anti-tumor efficacy. In parallel, artificial intelligence (AI) tools could be leveraged in the future—based on established AI applications in miRNA cancer research—to accelerate the identification of miR-106b-5p-related biomarkers and guide personalized therapy selection. Our findings position miR-106b-5p as a previously unrecognized molecular bridge between cancer and doxorubicin-induced cardiotoxicity. The development of the AM106 antagomir represents a promising approach with potential clinical applicability in cardio-oncology, offering dual benefits: tumor control and cardioprotection. Coupling this innovation with AI-driven analysis of patient data may enable precision risk stratification, early intervention, and improved outcomes. miR-106b-5p thus emerges as a central therapeutic target and biomarker candidate for transforming the clinical management of cancer patients at risk for heart failure. Full article

Background: Brown adipose tissue (BAT) is indispensable for producing heat and contributes critically to the survival of neonatal mammals. MicroRNAs (miRNAs) are small noncoding RNAs that serve as key post-transcriptional regulators, playing a crucial role in regulating BAT development and thermogenesis. However, the role of miR-326-3p in goat brown adipocytes remains largely unclear. Methods: Primary brown adipocytes were isolated from goat perirenal adipose tissue and subjected to gain and loss-of-function assays using miR-326-3p mimics and inhibitors. Lipid accumulation, thermogenic-related genes, and mitochondrial gene expression were quantified by Oil Red O staining and qRT-PCR. Target prediction and dual-luciferase reporter assays were performed to validate direct interaction between miR-326-3p and FGF11. Results: Expression profiling demonstrated that miR-326-3p is more enriched in brown adipose tissue (BAT) than in white adipose tissue (WAT), and the expression level gradually decreases with adipocyte differentiation. miR-326-3p overexpression significantly inhibited lipid droplet accumulation and the expression of genes associated with differentiation, thermogenesis, and mitochondria, including PPARγ, FABP4, UCP1, and PGC1α, whereas inhibition produced the opposite effect. Bioinformatic prediction and dual-luciferase reporter assays further identified fibroblast growth factor 11 (FGF11) as a direct target of miR-326-3p. Conclusions: These findings reveal that miR-326-3p negatively regulates the differentiation and expression of thermogenic-related genes of goat brown adipocytes, uncovering a novel miR-326-3p-FGF11 regulatory axis. Full article

Refrigeration has become a common practice for preserving Dendrobium officinale products. The molecular mechanisms underlying chilling stress responses, particularly those linking physiological adaptation to flavor-related metabolite changes, remain unclear. This study aimed to explore the transcriptional and metabolic changes in D. officinale leaves during cold treatment and to identify key stress-responsive metabolites underlying flavor modulation and their roles in cold adaptation. Transcriptional clustering analysis revealed distinct expression profiles under varying temperatures, indicating that chilling temperatures affect pathways related to RNA processing, oxidative stress, and secondary metabolism. Metabolomics profiling demonstrated significant metabolite shifts over time, with lipids, organic acids, and phenylpropanoids being prominently altered. Notably, flavonoids like rutin and sugars like trehalose varied in their accumulation depending on the duration of cold exposure. Proteomic analysis indicated that proteins involved in amino acid metabolism and the TCA (tricarboxylic acid) cycle were significantly impacted by prolonged chilling, with amino acids (key osmoprotectants and flavor contributors) accumulating over time, linking cold stress adaptation to sensory quality enhancement. These findings suggest that a chilling temperature primarily affects metabolic flow at different time points, which could help control the quality of D. officinale leaves during cold storage. Full article

Cancer is a multifaceted disease characterized by uncontrolled cell division resulting from substantial disruptions of normal biological processes. Central to its development is cellular transformation, which involves a dynamic sequence of events including chromosomal translocations, genetic mutations, abnormal DNA methylation, post-translational protein modifications, and other genetic and epigenetic alterations. These changes compromise physiological regulatory mechanisms and contribute to accelerated tumor growth. A critical factor in this process is the dysregulation of transcription factors (TFs) which regulate gene expression and DNA transcription. Dysregulation of TFs initiates a cascade of biochemical events, such as abnormal DNA replication, that further enhance cell proliferation and increase genomic instability. This microenvironment not only sustains tumor growth but also promotes the accumulation of somatic mutations, thereby fueling tumor evolution and heterogeneity. In this study, we employed an in silico approach to identify TFs regulating 622 key genes whose mutations are implicated in carcinogenesis. Transcriptional regulatory networks were analyzed through bioinformatics methods to elucidate molecular pathways involved in cancer development. A thorough understanding of these processes may help to clarify the function of dysregulated TFs and facilitate the development of novel therapeutic approaches designed to make cancer treatments personalized and efficacious. Full article

‘Hainan Qingyou’ (Citrus maxima) Pomelo is one of the predominant local cultivars cultivated in Hainan Province, renowned for its high economic value and strong market competitiveness. However, during cultivation, it was observed that the fruit quality of ‘Hainan Qingyou’ grafted onto a ‘Sanhong’ interstock deteriorated, predominantly manifesting as vesicle granulation. This study was therefore conducted to investigate this phenomenon using ‘Sanhong’ Honey Pomelo as the interstock. Fruit quality indicators were measured, and pulp transcriptomic analysis was performed during the expansion and maturation stages. The results indicated that fruits grafted onto ‘Sanhong’ interstock (SHZ) exhibited increased peel thickness, yellower peel, reduced edible rate, higher pulp firmness, decreased total soluble solids (TSS), increased total acid content, and reduced total antioxidant capacity at maturity, all contributing to diminished fruit quality. Additionally, SHZ fruit accumulated higher lignin content in the pulp, leading to vesicle granulation, which severely compromised marketability. Transcriptomic analysis identified 42 structural genes involved in lignin biosynthesis in ‘Hainan Qingyou’ pulp, including 5 PAL, 2 C4H, 2 4CL, 6 CAD, 15 PER, 2 HCT, 1 C3′H, 1 CCoAOMT, 1 CCR, 1 COMT, 2 CSE, and 1 F5H genes. Most of these genes were highly expressed in SHZ fruit at maturity, with expression levels significantly higher than those in fruit grafted onto ‘Hainan Qingyou’ interstock (QYZ). The interstock also affected hormone signaling pathways. Weighted gene co-expression network analysis (WGCNA) identified transcription factors such as MYB, MIKC, ERF, and bZIP as key regulators involved in pulp lignin biosynthesis. This study provides insights into the effects of rootstocks on citrus fruit quality and offers valuable information for cultivar improvement in pomelo orchards. Full article