Search Results (3,542)

As the principal dietary source of lipids, edible oils (notably vegetable oils) exist in crude form predominantly as triacylglycerols (about 95%), with the remainder comprising impurities and diverse minor components. Therefore, the refining processes of vegetable oil are particularly important. The application potential of safflower seed oil (SSO) in both nutraceutical and pharmaceutical domains is attributed to its exceptionally high linoleic acid concentration and abundant polyphenolic constituents. However, a systematic analysis of SSO during physical refining has yet to be conducted. This study aims to investigate the effects of refining processes on the fatty acids of SSO compared with flaxseed oil (FSO). In this study, chemical analysis, gas chromatography and ultra-high-performance liquid chromatography were used to analyze and compare the physicochemical indexes, fatty acid composition, and the lipidomics of SSO and FSO. Results indicated that optimized refining significantly enhances quality parameters in both SSO and FSO. A total of 40 and 43 fatty acids were identified in SSO and FSO, respectively. Deacidification significantly altered their fatty acid profiles, particularly polyunsaturated fatty acids, with C18:2 and C18:3 being the most affected. A total of 20 significantly different lipids were screened (variable importance in projection > 1.5, p < 0.05) and were mainly classified as glycerophospholipids and glycerolipids, of which two lipids (C18:2 and C18:3 (9, 12, 15)) demonstrated particularly marked differences, suggesting that these lipid species represent significant discriminators between SSO and FSO groups; these two lipids exhibited significant alterations during the refining processes of SSO and FSO, respectively. Full article

Hippophae rhamnoides ssp. sinensis Rousi a species of significant ecological and economic value that is native to the Qinghai–Tibet Plateau and arid/semi-arid regions. Investigating the mitochondrial genome can elucidate stress adaptation mechanisms, population genetic structure, and hybrid evolutionary history, offering molecular insights for ecological restoration and species conservation. However, the genetic information and evolutionary mechanisms of its mitochondrial genome remain poorly understood. This study aimed to assemble the complete mitochondrial genome of H. rhamnoides L. ssp. sinensis using Illumina sequencing, uncovering its structural features, evolutionary pressures, and environmental adaptability and addressing the research gap regarding mitochondrial genomes within the Hippophae genus. The study assembled a 454,444 bp circular mitochondrial genome of H. rhamnoides ssp. sinensis, with a GC content of 44.86%. A total of 73 genes and 3 pseudogenes were annotated, with the notable absence of the rps2 gene, which is present in related species. The genome exhibits significant codon usage bias, particularly with high-frequency use of the alanine codon GCU and the isoleucine codon AUU. Additionally, 449 repetitive sequences, potentially driving genome recombination, were identified. Our evolutionary pressure analysis revealed that most genes are under purifying selection, while genes such as atp4 and nad4 exhibit positive selection. A nucleotide diversity analysis revealed that the sdh4 gene exhibits the highest variation, whereas rrn5 is the most conserved. Meanwhile, phylogenetic analysis showed that H. rhamnoides ssp. sinensis from China is most closely related to Hippophae tibetana, with extensive homologous sequences (49.72% of the chloroplast genome) being identified between the chloroplast and mitochondrial genomes, indicating active inter-organellar gene transfer. Furthermore, 539 RNA editing sites, primarily involving hydrophilic-to-hydrophobic amino acid conversions, were predicted, potentially regulating mitochondrial protein function. Our findings establish a foundation for genetic improvement and research on adaptive evolutionary mechanisms in the Hippophae genus, offering a novel case study for plant mitochondrial genome evolution theory. Full article

Green spaces are essential for urban environments, but urban expansion often results in fragmented patches and narrow pavements unsuitable for tree growth. Consequently, there is a pressing need for alternative vegetation in urban landscapes where tree planting is impractical. Urban spontaneous vegetation (USV)—plants that establish naturally without cultivation—shows promise for urban landscaping, and yet has been underexplored in urban ecology. This study was the first systematic survey to examine the composition of USV in Chiang Mai, Thailand, across seven urban locations. The survey was conducted along 13 sidewalk routes (totaling 33.24 km), documenting all non-tree vascular plant species. A total of 63 USV species from 24 families were recorded, predominantly colonizing pavement gaps, cracks, and curbside cracks. The most diverse family was Poaceae, with 15 species. Among the 61 identified species, 32 species (52%) were non-native. Seven species were found in all surveyed locations, highlighting their adaptability to challenging urban conditions. Fifty USV species are medicinal plants. Many species exhibit characteristics that are ideal for sustainable landscaping, such as drought tolerance, low maintenance requirements, and ornamental value. This study highlights USV as a key component of green infrastructure and provides new insights for urban sustainable landscaping. Full article

Myriophyllum heterophyllum is an aquatic macrophyte that is invasive to the northeastern United States and several western European countries. Spreading by vegetative clonal propagation, especially fragmentation, extensive resources are devoted to limiting its growth and spread; however, genetic assessments are not typically included in management strategies. Reduction in genetic (clonal) diversity should accompany biomass reduction, yet without genetic assessment, the efficacy of plant removal remains unclear. This paper is the first to describe a microsatellite marker library and its use in the characterization of Myriophyllum heterophyllum. Eighty-seven tissue samples were collected across the invasive distribution of Myriophyllum heterophyllum in Maine, USA. DNA was extracted, and PCR amplification was employed to screen 13 published microsatellites. Sequencing of the amplified loci was performed to characterize repeat motifs and confirm primer binding sites. Fragment sizing of PCR amplicons was employed to determine microsatellite lengths across the 87 samples. A total of 7 of the 13 tested markers were amplified, with six of those seven found to be variable. Polyploidy was evident from allelic diversity within individuals, although precise ploidy could not be determined. Observed heterozygosity ranged from 0.16 to 1.00 across variable markers. This seven-marker library was effective in characterizing the genetic diversity of both newly discovered (<5 years) and older (>50 years) infestations and is expected to be suitable for assessment of genetic diversity in populations within the native range of M. heterophyllum. The marker library also shows potential for use in several other Myriophyllum species. Full article

The objective of this work was to analyse the genetic diversity of a population of Citrus spp. in the south of the State of Espírito Santo, Brazil, for pre-breeding studies. For that, a total of sixty genotypes were analysed, including ten citrus varieties from four species of the Citrus genus. The methodology involved DNA extraction, amplification via polymerase chain reaction, and the use of a set of 16 Simple Sequence Repeat markers. These markers identified 42 alleles, with a variation of one to four alleles per locus, an average heterozygosity value of 0.53, and an average polymorphic information content of up to 0.29 per species. After the analysis, a dissimilarity matrix was generated using Jaccard distance and a dendrogram, revealing the formation of two groups: Group I, comprising Citrus sinensis varieties, and Group II, comprising varieties of Citrus latifolia, Citrus aurantifolia, and Citrus reticulata. Our study demonstrated that the combination of these markers allowed for the differentiation of genotypes within the collection. The results obtained are valuable for the future management of the collection and the efficient use of genetic diversity estimation in Citrus spp. Full article

Microbial communities, as critical functional components of riverine ecosystems, play a pivotal role in biogeochemical cycles and water quality regulation. The South-to-North Water Diversion Middle Route Project (SNWD-MRP) is a major cross-basin water transfer initiative, and bacteria are essential for the stability of water quality in the project. This study employed environmental DNA (eDNA) metabarcoding targeting the 16S rRNA gene to investigate spatiotemporal variations in water quality and bacterial communities along the SNWD-MRP during summer and winter. Integrated analyses, including redundancy analysis (RDA), Mantel tests, and ecological network modeling, were applied to unravel the driving mechanisms of microbial succession. The water quality along the SNWD-MRP is generally classified as Grade I, with significant seasonal variations in water quality parameters and microbial community composition. In the summer, higher temperatures lead to an increased abundance of cyanobacteria. In contrast, during the winter, lower water temperatures and higher dissolved oxygen levels result in the dominance of Pseudomonas and Bacillota species. RDA identified the permanganate index as the primary driver of microbial composition across seasons, with total phosphorus and total nitrogen having a greater influence in winter. Mantel tests highlighted significant correlations between Cyanobacteria and total phosphorus during winter. Ecological network analysis revealed that the complexity and connectivity of the winter network increased, likely due to suitable nutrient levels rendering the microbial network more complex and stable. These findings underscore the synergistic effects of temperature and nutrient availability on microbial succession, providing actionable insights for optimizing water quality management and ecological stability in large-scale water diversion systems. Full article

Histamine can damage the antioxidant and immune systems in fish and crustaceans. Rutin, a natural substance with a diverse phenolic structure, has demonstrated antioxidant and anti-inflammatory properties. However, whether rutin can mitigate histamine-induced negative effects remains uninvestigated in fish models. This study investigated the effect of 0.1–100 μM rutin preincubation on histamine (29.5 mM)-induced cytotoxicity in zebrafish liver cells (ZFL) and its potential mechanisms. Results showed that 0.1–100 μM rutin significantly improved ZFL cell survival following histamine stimulation and protected cellular morphology. Rutin inhibited the adverse effects of histamine on ZFL by scavenging or suppressing the accumulation of reactive oxygen species (ROS), H₂O₂, and malondialdehyde (MDA), while increasing the activities of superoxide dismutase (SOD), catalase (CAT), and total antioxidant capacity (T-AOC). At the protein level, 10 μM rutin significantly promoted Nrf2 protein expression. HO-1 protein was significantly up-regulated after preincubation with 0.1–10 μM rutin, whereas IL-1β protein levels were significantly down-regulated. The mechanism may involve activation of the Nrf2 antioxidant signaling pathway and inhibition of the NF-κB inflammatory signaling pathway. In summary, within the experimental concentration range, 10 μM rutin showed the strongest inhibitory effects on histamine-induced ZFL cell death and oxidative stress. This study provides a theoretical basis and data support for evaluating rutin’s feasibility as a green aquatic feed additive. Full article

The WRKY gene family is a widely distributed and highly conserved transcription factor (TF) family in plants, with its members playing key roles in plant growth and development, stress response, and metabolism. Although WRKY TFs have been extensively studied in many plant species, research on the WRKY gene family in Vaccinium bracteatum Thunb. remains limited. Therefore, integrating molecular biology and bioinformatics approaches to further explore the WRKY gene family in V. bracteatum is of considerable scientific importance. In this study, we employed various online tools to obtain genomic and expression data, which were subsequently analyzed to determine the composition, evolutionary relationships, and functions of WRKY family genes in V. bracteatum. A total of 66 WRKY genes (VaWRKY) were identified, named based on homology alignment. Phylogenetic analysis classified the 66 VaWRKYs into three major clades and seven subclades. Sequence and structural analyses of VaWRKY genes provided insights into their evolutionary and functional characteristics. Expression profile analysis revealed significant differences in the expression of 12 VaWRKY genes at various stages of fruit development. Protein interaction analysis further indicated that VaWRKY genes are functionally diverse, playing important roles in stress response, seed germination regulation, and plant growth and development. In summary, we have a deeper understanding of VaWRKY genes, and systematic analysis of structure, evolutionary characteristics, and expression patterns plays an important role in analyzing its biological functions, molecular breeding, and enhancing economic value. Full article

Twenty-nine sediment samples were collected from Hurghada Bay, a highly impacted coastal area along the Northern Red Sea of Egypt, to evaluate environmental quality and human-induced effects on benthic ostracods. As potential bioindicators, benthic ostracods are highly responsive to environmental disturbances, with pollution leading to reduced abundance, lower diversity, and increased opportunistic taxa. To investigate the link between ostracod assemblages and sediment contamination, we measured the concentrations of eight heavy metals (Cu, Cd, Zn, Pb, As, Cr, Ni, and Mn) using inductively coupled plasma–atomic emission spectrometry (ICP-AES). Multivariate statistical analyses identified three distinct ostracod assemblages distributed across three station groups with varying pollution levels. Group I, associated with offshore stations, exhibited low to moderate heavy metal (HM) concentrations and high ostracod abundance and was dominated by Moosella striata, Hiltermannicythere rubrimaris, Ruggieria danielopoli, Neonesidea schulzi, and Paranesidea fracticorallcola, where the water depth and sand content are the main controlling factors. In contrast, Group II, corresponding to stations with the highest HMs and total organic matter (TOM), was dominated by pollution-tolerant species Jugosocythereis borchersi, Cyprideis torosa, Alocopocythere reticulata, and, to a lesser extent, Ghardaglaia triebeli, with reduced ostracod density and diversity. Group III, characterized by stations influenced by the mud-controlling factor, had the lowest HMs and was dominated by pollution-sensitive species Xestoleberis rhomboidei, Paranesidea fortificata, and Loxocorniculum ghardaquensis. These findings highlight the ecological risks posed by HM pollution and emphasize the urgent need for pollution mitigation strategies and continued monitoring to preserve the Red Sea’s benthic biodiversity. Full article

Migratory birds play a key role in the ecology of tick-borne pathogens, serving as both hosts for ticks and as potential carriers of a wide range of infectious agents that can affect wildlife, domestic animals, and humans. Their long-distance movements contribute to the dispersal of ticks and the pathogens they harbor, with potential implications for the emergence and spread of zoonotic disease. This study focuses on the prevalence of Rickettsia spp. and Babesia/Theileria spp. in ticks collected from migratory birds in Sardinia, Italy, during two consecutive migration seasons (April–May and October–November 2021), corresponding to the spring and autumn migratory periods. A total of 961 ticks, primarily Ixodes ricinus, was collected from various bird species. Molecular analyses using polymerase chain reaction (PCR) and sequencing enabled the detection and identification of multiple Rickettsia species, with R. helvetica, R. monacensis, and R. aeschlimannii being the most frequently identified. Protozoan pathogens, including B. venatorum and Theileria ovis, were also detected in the tick samples. These findings underscore the diversity of pathogens in bird-associated ticks and the role of migratory birds in the geographical spread of these diseases. These results also provide valuable insights into pathogen transmission dynamics and stress the importance of monitoring migratory birds to assess and mitigate the risks of zoonotic diseases. Further research is needed to clarify the ecological interactions among birds, ticks, and pathogens across different geographic regions. Full article

Municipal wastewater with a low carbon-to-nitrogen (C/N) ratio presents challenges for conventional nitrogen removal processes, often requiring costly external carbon sources. This study investigated the enhancement of nitrogen removal in a simultaneous nitrification and denitrification (SND) system by incorporating heterotrophic nitrification and aerobic denitrification (HN-AD) bacterial agents (Klebsiella variicola L3, Acinetobacter beijerinckii W4, and Acinetobacter sp. Z1) with modified basalt fiber carriers. Three reactors were compared: mixed HN-AD strains (M), mixed strains with activated sludge (A+M), and activated sludge alone (A). Results demonstrated that the A+M reactor achieved superior performance, with median removal efficiencies of 82.2% for NH₄⁺-N, 52.9% for total nitrogen (TN), and 51.6% for COD, outperforming the M reactor (75.2%, 43.6%, and 51.6%) and the A reactor (63.2%, 29.3%, and 44.8%). The A+M reactor also exhibited a 40% reduction in COD consumption per unit TN removed (2.55 ± 1.75) compared to the control reactor A (4.25 ± 3.99). Microbial analysis revealed Acinetobacter sp. Z1 (6.1%) and K. variicola L3 (1.1%) as dominant species, with the A+M reactor showing higher microbial diversity (56.4% Proteobacteria, 10.2% Bacteroidota) and biological viability (VSS/SS ratio of 0.70 ± 0.01). Extracellular polymeric substance (EPS) content in A+M reached 242.26 ± 15.52 mg/g-VSS, with a protein-to-polysaccharide ratio of 2.77 ± 0.00, indicating robust biofilm activity. These findings highlight the potential of HN-AD bacterial agents to enhance nitrogen removal in low C/N wastewater treatment, offering a cost-effective and sustainable alternative to traditional methods by reducing reliance on external carbon sources and improving system efficiency. Full article

Moniliophthora roreri, the causal agent of moniliasis, severely affects cacao production in Latin America, and sustainable control alternatives remain limited. This study aimed to evaluate the antifungal potential of essential oils (EOs) from Piper species and selected volatile compounds against M. roreri. A total of 34 EOs obtained by steam distillation were assessed for mycelial growth inhibition under fumigation conditions. The most active EOs (≥60% inhibition) were chemically characterized by GC-MS, and their median inhibitory concentrations (IC₅₀) were determined. Additionally, 40 structurally diverse volatile compounds were selected and evaluated for their antifungal activity to identify the main contributors and explore structure–activity relationships. Most of the active EOs exhibited a high proportion of phenylpropanoids and oxygenated monoterpenoids, with IC₅₀ values ranging from 0.58 to 184.27 µL·L⁻¹; the most active were those from P. holtonii and P. aduncum. Among the 28 most active compounds, IC₅₀ values ranged from 0.48 to 109.81 µL·L⁻¹; the most potent were myristicin and dillapiole. The most potent molecules were phenylpropanoids bearing methoxy and methylenedioxy groups, followed by oxygenated monoterpenoids and long-chain ketones and alcohols. This is the first report of antifungal activity against M. roreri for most of the evaluated EOs and all tested compounds, highlighting the potential of the Piper genus as a source of natural alternatives for sustainable disease management in cacao cultivation. Full article

Arbuscular mycorrhizal fungi (AMF) demonstrate considerable potential for remediating soils contaminated with heavy metals. However, comprehensive research examining the effects of cadmium (Cd) contamination on AMF communities in paddy fields remains scarce, constraining their broader application in such environments. In this study, high-throughput sequencing was utilized to assess AMF community structure in paddy soils subjected to five distinct levels of Cd contamination. The study also explored the effect of different soil properties on AMF community dynamics. A total of 188 AMF taxa were identified across all soil samples, spanning four families. The Claroideoglomeraceae family emerged as the predominant group, exhibiting notable Cd tolerance. While elevated Cd concentrations inhibited the AMF community structure, lower concentrations increased the α-diversity of the community. Furthermore, soil-available phosphorus, calcium levels, and pH were found to be critical factors driving shifts in AMF community structure. Redundancy analysis explicitly quantified the relative strength of environmental factors, demonstrating that phosphorus and pH directly influenced the AMF community structure through significant effects, while Cd and calcium exerted their influence via indirect or nonlinear pathways. Given the relative abundance advantage of Claroideoglomeraceae in Cd-contaminated environments and its positive correlation with Cd concentration, we hypothesize that this group may exhibit Cd tolerance. Therefore, it could be considered a potential candidate species for prioritization in future field inoculation trials, and its practical application potential should be further validated. Full article

The genus Bauhinia has over 350 species distributed on different continents of the world. The vast majority of the species in this genus possess interesting biological activities. Also, they are good sources of flavonoids, which are known to elicit excellent pharmacological properties and are well-positioned as potential drug candidates. A literature search was performed with proper consideration of articles published and indexed in PubMed, Scopus, Springer Link, Google Scholar, ScienceDirect, SciFinder, and Medline databases between 1980 and 2023. A total of 164 flavonoids isolated from the genus Bauhinia were reviewed, and biological activities including antidiabetic, anti-cancer, antibacterial, cytotoxicity, antidiarrheal, antioxidant, anti-inflammatory, and anti-cataract were all reported. This study gave a comprehensive review of these flavonoids through detailed classification, structural diversity, and pharmacological activities. Full article

In this study, we performed whole-genome resequencing (WGS) to investigate genomic variation and functional divergence among four wild Cymbidium species—C. ensifolium, C. sinense, C. kanran, and C. floribundum—collected from Fujian Province, China. A total of 350.58 Gbp of high-quality sequencing data was obtained from 13 samples, enabling comprehensive identification of SNPs and InDels. Genomic variants were unevenly distributed, with lower variation in gene-rich regions and higher levels in non-coding areas. Circos plots and variant density heatmaps revealed significant regional differences across chromosomes, with longer chromosomes exhibiting greater variant enrichment in 1 Mb windows. C. floribundum harbored the highest number of nonsynonymous SNPs and InDel-associated genes, whereas C. sinense and C. kanran had fewer mutations. KEGG pathway enrichment analysis revealed species-specific functional divergence, particularly in metabolism, stress response, and secondary metabolite biosynthesis. Population structure analysis and principal component analysis (PCA) indicated genetic differentiation among these species Notably, C. kanran exhibited high within-population genetic diversity. These findings provide essential genomic resources for the conservation and functional studies of wild Cymbidium species in subtropical China. Full article