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Search Results (13,205)

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21 pages, 4258 KiB  
Article
Abscisic Acid Metabolizing Rhodococcus sp. Counteracts Phytopathogenic Effects of Abscisic Acid Producing Botrytis sp. on Sunflower Seedlings
by Alexander I. Shaposhnikov, Oleg S. Yuzikhin, Tatiana S. Azarova, Edgar A. Sekste, Anna L. Sazanova, Nadezhda A. Vishnevskaya, Vlada Y. Shahnazarova, Polina V. Guro, Miroslav I. Lebedinskii, Vera I. Safronova, Yuri V. Gogolev and Andrey A. Belimov
Plants 2025, 14(15), 2442; https://doi.org/10.3390/plants14152442 - 7 Aug 2025
Abstract
One of the important traits of many plant growth-promoting rhizobacteria (PGPR) is the biocontrol of phytopathogens. Some PGPR metabolize phytohormone abscisic acid (ABA); however, the role of this trait in plant–microbe interactions is scarcely understood. Phytopathogenic fungi produce ABA and use this property [...] Read more.
One of the important traits of many plant growth-promoting rhizobacteria (PGPR) is the biocontrol of phytopathogens. Some PGPR metabolize phytohormone abscisic acid (ABA); however, the role of this trait in plant–microbe interactions is scarcely understood. Phytopathogenic fungi produce ABA and use this property as a negative regulator of plant resistance. Therefore, interactions between ABA-producing necrotrophic phytopathogen Botrytis sp. BA3 with ABA-metabolizing rhizobacterium Rhodococcus sp. P1Y were studied in a batch culture and in gnotobiotic hydroponics with sunflower seedlings. Rhizobacterium P1Y possessed no antifungal activity against BA3 and metabolized ABA, which was synthesized by BA3 in vitro and in associations with sunflower plants infected with this fungus. Inoculation with BA3 and the application of exogenous ABA increased the root ABA concentration and inhibited root and shoot growth, suggesting the involvement of this phytohormone in the pathogenesis process. Strain P1Y eliminated negative effects of BA3 and exogenous ABA on root ABA concentration and plant growth. Both microorganisms significantly modulated the hormonal status of plants, affecting indole-3-acetic, salicylic, jasmonic and gibberellic acids, as well as cytokinins concentrations in sunflower roots and/or shoots. The hormonal effects were complex and could be due to the production of phytohormones by microorganisms, changes in ABA concentrations and multiple levels of crosstalk in hormone networks regulating plant defense. The results suggest the counteraction of rhizobacteria to ABA-producing phytopathogenic fungi through the metabolism of fungal ABA. This expands our understanding of the mechanisms related to the biocontrol of phytopathogens by PGPR. Full article
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22 pages, 7229 KiB  
Review
Evolution and Trends of the Exploration–Exploitation Balance in Bio-Inspired Optimization Algorithms: A Bibliometric Analysis of Metaheuristics
by Yoslandy Lazo, Broderick Crawford, Felipe Cisternas-Caneo, José Barrera-Garcia, Ricardo Soto and Giovanni Giachetti
Biomimetics 2025, 10(8), 517; https://doi.org/10.3390/biomimetics10080517 - 7 Aug 2025
Abstract
The balance between exploration and exploitation is a fundamental element in the design and performance of bio-inspired optimization algorithms. However, to date, its conceptual evolution and its treatment in the scientific literature have not been systematically characterized from a bibliometric approach. This study [...] Read more.
The balance between exploration and exploitation is a fundamental element in the design and performance of bio-inspired optimization algorithms. However, to date, its conceptual evolution and its treatment in the scientific literature have not been systematically characterized from a bibliometric approach. This study performs an exhaustive analysis of the scientific production on the balance between exploration and exploitation using records extracted from the Web of Science (WoS) database. The processing and analysis of the data were carried out through the combined use of Bibliometrix (R package) and VOSviewer, tools that made it possible to quantify productivity, map collaborative networks, and visualize emerging thematic trends. The results show a sustained growth in the volume of publications over the last decade, as well as the consolidation of academic collaboration networks and the emergence of new thematic lines in the field. In particular, metaheuristic algorithms have demonstrated a significant and growing impact, constituting a fundamental pillar in the advancement and methodological diversification of the exploration–exploitation balance. This work provides a quantitative framework and a structured view of the evolution of research, identifies the main actors and trends, and raises opportunities for future lines of research in the field of optimization using metaheuristics, the most prominent instantiation of bio-inspired optimization algorithms. Full article
(This article belongs to the Special Issue Nature-Inspired Metaheuristic Optimization Algorithms 2025)
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30 pages, 2141 KiB  
Article
Enhancing Efficiency in Sustainable IoT Enterprises: Modeling Indicators Using Pythagorean Fuzzy and Interval Grey Approaches
by Mimica R. Milošević, Miloš M. Nikolić, Dušan M. Milošević and Violeta Dimić
Sustainability 2025, 17(15), 7143; https://doi.org/10.3390/su17157143 - 6 Aug 2025
Abstract
“The Internet of Things” is a relatively new idea that refers to objects that can connect to the Internet and exchange data. The Internet of Things (IoT) enables novel interactions between objects and people by interconnecting billions of devices. While there are many [...] Read more.
“The Internet of Things” is a relatively new idea that refers to objects that can connect to the Internet and exchange data. The Internet of Things (IoT) enables novel interactions between objects and people by interconnecting billions of devices. While there are many IoT-related products, challenges pertaining to their effective implementation, particularly the lack of knowledge and confidence about security, must be addressed. To provide IoT-based enterprises with a platform for efficiency and sustainability, this study aims to identify the critical elements that influence the growth of a successful company integrated with an IoT system. This study proposes a decision support tool that evaluates the influential features of IoT using the Pythagorean Fuzzy and Interval Grey approaches within the Analytical Hierarchy Process (AHP). This study demonstrates that security, value, and connectivity are more critical than telepresence and intelligence indicators. When both strategies are used, market demand and information privacy become significant indicators. Applying the Pythagorean Fuzzy approach enables the identification of sensor networks, authorization, market demand, and data management in terms of importance. The application of the Interval Grey approach underscores the importance of data management, particularly in sensor networks. The indicators that were finally ranked are compared to obtain a good coefficient of agreement. These findings offer practical insights for promoting sustainability in enterprise operations by optimizing IoT infrastructure and decision-making processes. Full article
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17 pages, 3354 KiB  
Article
Quantitative Analysis of Adulteration in Anoectochilus roxburghii Powder Using Hyperspectral Imaging and Multi-Channel Convolutional Neural Network
by Ziyuan Liu, Tingsong Zhang, Haoyuan Ding, Zhangting Wang, Hongzhen Wang, Lu Zhou, Yujia Dai and Yiqing Xu
Agronomy 2025, 15(8), 1894; https://doi.org/10.3390/agronomy15081894 - 6 Aug 2025
Abstract
Adulteration detection in medicinal plant powders remains a critical challenge in quality control. In this study, we propose a hyperspectral imaging (HSI)-based method combined with deep learning models to quantitatively analyze adulteration levels in Anoectochilus roxburghii powder. After preprocessing the spectral data using [...] Read more.
Adulteration detection in medicinal plant powders remains a critical challenge in quality control. In this study, we propose a hyperspectral imaging (HSI)-based method combined with deep learning models to quantitatively analyze adulteration levels in Anoectochilus roxburghii powder. After preprocessing the spectral data using raw, first-order, and second-order Savitzky–Golay derivatives, we systematically evaluated the performance of traditional machine learning models (Random Forest, Support Vector Regression, Partial Least Squares Regression) and deep learning architectures. While traditional models achieved reasonable accuracy (R2 up to 0.885), their performance was limited by feature extraction and generalization ability. A single-channel convolutional neural network (CNN) utilizing individual spectral representations improved performance marginally (maximum R2 = 0.882), but still failed to fully capture the multi-scale spectral features. To overcome this, we developed a multi-channel CNN that simultaneously integrates raw, SG-1, and SG-2 spectra, effectively leveraging complementary spectral information. This architecture achieved a significantly higher prediction accuracy (R2 = 0.964, MSE = 0.005), demonstrating superior robustness and generalization. The findings highlight the potential of multi-channel deep learning models in enhancing quantitative adulteration detection and ensuring the authenticity of herbal products. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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23 pages, 3337 KiB  
Article
Imbalance Charge Reduction in the Italian Intra-Day Market Using Short-Term Forecasting of Photovoltaic Generation
by Cristina Ventura, Giuseppe Marco Tina and Santi Agatino Rizzo
Energies 2025, 18(15), 4161; https://doi.org/10.3390/en18154161 - 5 Aug 2025
Abstract
In the Italian intra-day electricity market (MI-XBID), where energy positions can be adjusted up to one hour before delivery, imbalance charges due to forecast errors from non-programmable renewable sources represent a critical issue. This work focuses on photovoltaic (PV) systems, whose production variability [...] Read more.
In the Italian intra-day electricity market (MI-XBID), where energy positions can be adjusted up to one hour before delivery, imbalance charges due to forecast errors from non-programmable renewable sources represent a critical issue. This work focuses on photovoltaic (PV) systems, whose production variability makes them particularly sensitive to forecast accuracy. To address these challenges, a comprehensive methodology for assessing and mitigating imbalance penalties by integrating a short-term PV forecasting model with a battery energy storage system is proposed. Unlike conventional approaches that focus exclusively on improving statistical accuracy, this study emphasizes the economic and regulatory impact of forecast errors under the current Italian imbalance settlement framework. A hybrid physical-artificial neural network is developed to forecast PV power one hour in advance, combining historical production data and clear-sky irradiance estimates. The resulting imbalances are analyzed using regulatory tolerance thresholds. Simulation results show that, by adopting a control strategy aimed at maintaining the battery’s state of charge around 50%, imbalance penalties can be completely eliminated using a storage system sized for just over 2 equivalent hours of storage capacity. The methodology provides a practical tool for market participants to quantify the benefits of storage integration and can be generalized to other electricity markets where tolerance bands for imbalances are applied. Full article
(This article belongs to the Special Issue Advanced Forecasting Methods for Sustainable Power Grid: 2nd Edition)
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23 pages, 10836 KiB  
Article
Potential Utilization of End-of-Life Vehicle Carpet Waste in Subfloor Mortars: Incorporation into Portland Cement Matrices
by Núbia dos Santos Coimbra, Ângela de Moura Ferreira Danilevicz, Daniel Tregnago Pagnussat and Thiago Gonçalves Fernandes
Materials 2025, 18(15), 3680; https://doi.org/10.3390/ma18153680 - 5 Aug 2025
Abstract
The growing need to improve the management of end-of-life vehicle (ELV) waste and mitigate its environmental impact is a global concern. One promising approach to enhancing the recyclability of these vehicles is leveraging synergies between the automotive and construction industries as part of [...] Read more.
The growing need to improve the management of end-of-life vehicle (ELV) waste and mitigate its environmental impact is a global concern. One promising approach to enhancing the recyclability of these vehicles is leveraging synergies between the automotive and construction industries as part of a circular economy strategy. In this context, ELV waste emerges as a valuable source of secondary raw materials, enabling the development of sustainable innovations that capitalize on its physical and mechanical properties. This paper aims to develop and evaluate construction industry composites incorporating waste from ELV carpets, with a focus on maintaining or enhancing performance compared to conventional materials. To achieve this, an experimental program was designed to assess cementitious composites, specifically subfloor mortars, incorporating automotive carpet waste (ACW). The results demonstrate that, beyond the physical and mechanical properties of the developed composites, the dynamic stiffness significantly improved across all tested waste incorporation levels. This finding highlights the potential of these composites as an alternative material for impact noise insulation in flooring systems. From an academic perspective, this research advances knowledge on the application of ACW in cement-based composites for construction. In terms of managerial contributions, two key market opportunities emerge: (1) the commercial exploitation of composites produced with ELV carpet waste and (2) the development of a network of environmental service providers to ensure a stable waste supply chain for innovative and sustainable products. Both strategies contribute to reducing landfill disposal and mitigating the environmental impact of ELV waste, reinforcing the principles of the circular economy. Full article
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23 pages, 23638 KiB  
Article
Enhanced YOLO and Scanning Portal System for Vehicle Component Detection
by Feng Ye, Mingzhe Yuan, Chen Luo, Shuo Li, Duotao Pan, Wenhong Wang, Feidao Cao and Diwen Chen
Sensors 2025, 25(15), 4809; https://doi.org/10.3390/s25154809 - 5 Aug 2025
Abstract
In this paper, a novel online detection system is designed to enhance accuracy and operational efficiency in the outbound logistics of automotive components after production. The system consists of a scanning portal system and an improved YOLOv12-based detection algorithm which captures images of [...] Read more.
In this paper, a novel online detection system is designed to enhance accuracy and operational efficiency in the outbound logistics of automotive components after production. The system consists of a scanning portal system and an improved YOLOv12-based detection algorithm which captures images of automotive parts passing through the scanning portal in real time. By integrating deep learning, the system enables real-time monitoring and identification, thereby preventing misdetections and missed detections of automotive parts, in this way promoting intelligent automotive part recognition and detection. Our system introduces the A2C2f-SA module, which achieves an efficient feature attention mechanism while maintaining a lightweight design. Additionally, Dynamic Space-to-Depth (Dynamic S2D) is employed to improve convolution and replace the stride convolution and pooling layers in the baseline network, helping to mitigate the loss of fine-grained information and enhancing the network’s feature extraction capability. To improve real-time performance, a GFL-MBConv lightweight detection head is proposed. Furthermore, adaptive frequency-aware feature fusion (Adpfreqfusion) is hybridized at the end of the neck network to effectively enhance high-frequency information lost during downsampling, thereby improving the model’s detection accuracy for target objects in complex backgrounds. On-site tests demonstrate that the system achieves a comprehensive accuracy of 97.3% and an average vehicle detection time of 7.59 s, exhibiting not only high precision but also high detection efficiency. These results can make the proposed system highly valuable for applications in the automotive industry. Full article
(This article belongs to the Topic Smart Production in Terms of Industry 4.0 and 5.0)
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22 pages, 884 KiB  
Article
Mitochondrial Dysregulation in Male Infertility: A Preliminary Study for Infertility-Specific lncRNA Variants
by Georgios Stamatellos, Maria-Anna Kyrgiafini, Aris Kaltsas and Zissis Mamuris
DNA 2025, 5(3), 38; https://doi.org/10.3390/dna5030038 - 5 Aug 2025
Viewed by 41
Abstract
Background/Objectives: Male infertility is a major health concern with a complex etiopathology, yet a substantial proportion of cases remain idiopathic. Mitochondrial dysfunction and non-coding RNA (ncRNA) deregulation have both been implicated in impaired spermatogenesis, but their interplay remains poorly understood. This study aimed [...] Read more.
Background/Objectives: Male infertility is a major health concern with a complex etiopathology, yet a substantial proportion of cases remain idiopathic. Mitochondrial dysfunction and non-coding RNA (ncRNA) deregulation have both been implicated in impaired spermatogenesis, but their interplay remains poorly understood. This study aimed to identify infertility-specific variants in ncRNAs that affect mitochondrial dynamics and homeostasis and to explore their roles. Methods: Whole-genome sequencing (WGS) was performed on genomic DNA samples from teratozoospermic, asthenozoospermic, oligozoospermic, and normozoospermic men. Variants uniquely present in infertile individuals and mapped to ncRNAs that affect mitochondrial dynamics were selected and prioritized using bioinformatics tools. An independent transcriptomic validation was conducted using RNA-sequencing data from testicular biopsies of men with non-obstructive azoospermia (NOA) to determine whether the ncRNAs harboring WGS-derived variants were transcriptionally altered. Results: We identified several infertility-specific variants located in lncRNAs known to interact with mitochondrial regulators, including GAS5, HOTAIR, PVT1, MEG3, and CDKN2B-AS1. Transcriptomic analysis confirmed significant deregulation of these lncRNAs in azoospermic testicular samples. Bioinformatic analysis also implicated the disruption of lncRNA–miRNA–mitochondria networks, potentially contributing to mitochondrial membrane potential loss, elevated reactive oxygen species (ROS) production, impaired mitophagy, and germ cell apoptosis. Conclusions: Our integrative genomic and transcriptomic analysis highlights lncRNA–mitochondrial gene interactions as a novel regulatory layer in male infertility, while the identified lncRNAs hold promise as biomarkers and therapeutic targets. However, future functional studies are warranted to elucidate their mechanistic roles and potential for clinical translation in reproductive medicine. Full article
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20 pages, 8975 KiB  
Article
Transcriptome Analysis of Potato (Solanum tuberosum L.) Seedlings with Varying Resistance Levels Reveals Diverse Molecular Pathways in Early Blight Resistance
by Jiangtao Li, Jie Li, Hongfei Shen, Rehemutula Gulimila, Yinghong Jiang, Hui Sun, Yan Wu, Binde Xing, Ruwei Yang and Yi Liu
Plants 2025, 14(15), 2422; https://doi.org/10.3390/plants14152422 - 5 Aug 2025
Viewed by 74
Abstract
Early blight, caused by the pathogen Alternaria solani, is a major fungal disease impacting potato production globally, with reported yield losses of up to 40% in susceptible varieties. As one of the most common diseases affecting potatoes, its incidence has been steadily [...] Read more.
Early blight, caused by the pathogen Alternaria solani, is a major fungal disease impacting potato production globally, with reported yield losses of up to 40% in susceptible varieties. As one of the most common diseases affecting potatoes, its incidence has been steadily increasing year after year. This study aimed to elucidate the molecular mechanisms underlying resistance to early blight by comparing gene expression profiles in resistant (B1) and susceptible (D30) potato seedlings. Transcriptome sequencing was conducted at three time points post-infection (3, 7, and 10 dpi) to identify differentially expressed genes (DEGs). Weighted Gene Co-expression Network Analysis (WGCNA) and pathway enrichment analyses were performed to explore resistance-associated pathways and hub genes. Over 11,537 DEGs were identified, with the highest number observed at 10 dpi. Genes such as LOC102603761 and LOC102573998 were significantly differentially expressed across multiple comparisons. In the resistant B1 variety, upregulated genes were enriched in plant–pathogen interaction, MAPK signaling, hormonal signaling, and secondary metabolite biosynthesis pathways, particularly flavonoid biosynthesis, which likely contributes to biochemical defense against A. solani. WGCNA identified 24 distinct modules, with hub transcription factors (e.g., WRKY33, MYB, and NAC) as key regulators of resistance. These findings highlight critical molecular pathways and candidate genes involved in early blight resistance, providing a foundation for further functional studies and breeding strategies to enhance potato resilience. Full article
(This article belongs to the Special Issue Advances in Plant Genetics and Breeding Improvement)
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14 pages, 379 KiB  
Essay
Is Platform Capitalism Socially Sustainable?
by Andrea Fumagalli
Sustainability 2025, 17(15), 7071; https://doi.org/10.3390/su17157071 - 4 Aug 2025
Viewed by 158
Abstract
This theoretical essay aims to analyze some of the socio-economic innovations introduced by Platform Capitalism Specifically, it focuses on two main aspects: first, the digital platform as a radical organizational innovation. Digital platforms represent a structural novelty in the market economy, signaling a [...] Read more.
This theoretical essay aims to analyze some of the socio-economic innovations introduced by Platform Capitalism Specifically, it focuses on two main aspects: first, the digital platform as a radical organizational innovation. Digital platforms represent a structural novelty in the market economy, signaling a new organization of production and labor. Second, the essay examines the role of platforms in directly generating value through the concept of “network value”. To this end, it explores the function of “business intelligence” as a strategic and competitive tool. Finally, the paper discusses the key issues associated with platform capitalism, which could threaten its social sustainability and contribute to economic and financial instability. These issues include the increasing commodification of everyday activities, the devaluation of paid labor in favor of free production driven by platform users (the so-called prosumers), and the emergence of proprietary and financial monopolies. Hence, digital platforms do not inherently ensure comprehensive social and environmental sustainability unless supported by targeted economic policy interventions. Conclusively, it is emphasized that defining robust social welfare frameworks—which account for emerging value creation processes—is imperative. Simultaneously, policymakers must incentivize the proliferation of cooperative platforms capable of fostering experimental circular economy models aligned with ecological sustainability. Full article
(This article belongs to the Section Economic and Business Aspects of Sustainability)
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31 pages, 4141 KiB  
Article
Automated Quality Control of Candle Jars via Anomaly Detection Using OCSVM and CNN-Based Feature Extraction
by Azeddine Mjahad and Alfredo Rosado-Muñoz
Mathematics 2025, 13(15), 2507; https://doi.org/10.3390/math13152507 - 4 Aug 2025
Viewed by 160
Abstract
Automated quality control plays a critical role in modern industries, particularly in environments that handle large volumes of packaged products requiring fast, accurate, and consistent inspections. This work presents an anomaly detection system for candle jars commonly used in industrial and commercial applications, [...] Read more.
Automated quality control plays a critical role in modern industries, particularly in environments that handle large volumes of packaged products requiring fast, accurate, and consistent inspections. This work presents an anomaly detection system for candle jars commonly used in industrial and commercial applications, where obtaining labeled defective samples is challenging. Two anomaly detection strategies are explored: (1) a baseline model using convolutional neural networks (CNNs) as an end-to-end classifier and (2) a hybrid approach where features extracted by CNNs are fed into One-Class classification (OCC) algorithms, including One-Class SVM (OCSVM), One-Class Isolation Forest (OCIF), One-Class Local Outlier Factor (OCLOF), One-Class Elliptic Envelope (OCEE), One-Class Autoencoder (OCAutoencoder), and Support Vector Data Description (SVDD). Both strategies are trained primarily on non-defective samples, with only a limited number of anomalous examples used for evaluation. Experimental results show that both the pure CNN model and the hybrid methods achieve excellent classification performance. The end-to-end CNN reached 100% accuracy, precision, recall, F1-score, and AUC. The best-performing hybrid model CNN-based feature extraction followed by OCIF also achieved 100% across all evaluation metrics, confirming the effectiveness and robustness of the proposed approach. Other OCC algorithms consistently delivered strong results, with all metrics above 95%, indicating solid generalization from predominantly normal data. This approach demonstrates strong potential for quality inspection tasks in scenarios with scarce defective data. Its ability to generalize effectively from mostly normal samples makes it a practical and valuable solution for real-world industrial inspection systems. Future work will focus on optimizing real-time inference and exploring advanced feature extraction techniques to further enhance detection performance. Full article
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19 pages, 7841 KiB  
Article
Co-Expression Network Analysis Suggests PacC Transcriptional Factor Involved in Botryosphaeria dothidea Pathogenicity in Chinese Hickory
by Dong Liang, Yiru Jiang, Wei Ai, Yu Zhang, Chengxing Mao, Tianlin Ma and Chuanqing Zhang
J. Fungi 2025, 11(8), 580; https://doi.org/10.3390/jof11080580 - 4 Aug 2025
Viewed by 138
Abstract
Botryosphaeria dothidea is the causative agent of Chinese hickory trunk canker, which poses significant threat to the production of Chinese hickory (Carya cathayensis Sarg.). Previous studies reported that endophytic–pathogenic phase transition, also referred to as latent infection, plays an important role in [...] Read more.
Botryosphaeria dothidea is the causative agent of Chinese hickory trunk canker, which poses significant threat to the production of Chinese hickory (Carya cathayensis Sarg.). Previous studies reported that endophytic–pathogenic phase transition, also referred to as latent infection, plays an important role in the interaction of Botryosphaeria dothidea with various host plants, including Chinese hickory. However, the mechanism underlying this phase transition is not well understood. Here, we employed RNA-Seq to investigate transcriptional changes in B. dothidea during its phase transition upon interaction with Chinese hickory. A co-expression network was generated based on 6391 differentially expressed genes (DEGs) identified from different infection stages and temperature treatments. One co-expressed module was found that highly correlated with temperature treatments which simulated conditions of B. dothidea latent infection in the field. Subsequently, 53 hub genes were detected, and gene ontology (GO) enrichment analysis revealed three categories of enriched GO terms: transmembrane transport or activity, ion homeostasis or transport, and carbohydrate metabolism. One PacC transcriptional factor (BDLA_00001555, an ambient pH regulator), and one endo-β-1,3-glucanase (BDLA_00010249) were specifically upregulated under temperature treatments that corresponded with the activation stage of B. dothidea’s pathogenic state. The knockout mutant strain of BDLA_00001555 demonstrated defective capability upon the activation of the pathogenic state. This confirmed that BDLA_00001555, the PacC transcriptional factor, plays an important role in the latent infection phase of B. dothidea. Our findings provide insights into the pathogenic mechanism of Chinese hickory trunk canker disease. Full article
(This article belongs to the Special Issue Fungal Metabolomics and Genomics, 2nd Edition)
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25 pages, 7432 KiB  
Article
Integration of mRNA and miRNA Analysis Reveals the Regulation of Salt Stress Response in Rapeseed (Brassica napus L.)
by Yaqian Liu, Danni Li, Yutong Qiao, Niannian Fan, Ruolin Gong, Hua Zhong, Yunfei Zhang, Linfen Lei, Jihong Hu and Jungang Dong
Plants 2025, 14(15), 2418; https://doi.org/10.3390/plants14152418 - 4 Aug 2025
Viewed by 154
Abstract
Soil salinization is a major constraint to global crop productivity, highlighting the need to identify salt tolerance genes and their molecular mechanisms. Here, we integrated mRNA and miRNA profile analyses to investigate the molecular basis of salt tolerance of an elite Brassica napus [...] Read more.
Soil salinization is a major constraint to global crop productivity, highlighting the need to identify salt tolerance genes and their molecular mechanisms. Here, we integrated mRNA and miRNA profile analyses to investigate the molecular basis of salt tolerance of an elite Brassica napus cultivar S268. Time-course RNA-seq analysis revealed dynamic transcriptional reprogramming under 215 mM NaCl stress, with 212 core genes significantly enriched in organic acid degradation and glyoxylate/dicarboxylate metabolism pathways. Combined with weighted gene co-expression network analysis (WGCNA) and RT-qPCR validation, five candidate genes (WRKY6, WRKY70, NHX1, AVP1, and NAC072) were identified as the regulators of salt tolerance in rapeseed. Haplotype analysis based on association mapping showed that NAC072, ABI5, and NHX1 exhibited two major haplotypes that were significantly associated with salt tolerance variation under salt stress in rapeseed. Integrated miRNA-mRNA analysis and RT-qPCR identified three regulatory miRNA-mRNA pairs (bna-miR160a/BnaA03.BAG1, novel-miR-126/BnaA08.TPS9, and novel-miR-70/BnaA07.AHA1) that might be involved in S268 salt tolerance. These results provide novel insights into the post-transcriptional regulation of salt tolerance in B. napus, offering potential targets for genetic improvement. Full article
(This article belongs to the Special Issue Applications of Bioinformatics in Plant Science)
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15 pages, 712 KiB  
Article
Extracting Correlations in Arbitrary Diagonal Quantum States via Weak Couplings and Auxiliary Systems
by Hui Li, Chao Zheng, Yansong Li and Xian Lu
Symmetry 2025, 17(8), 1233; https://doi.org/10.3390/sym17081233 - 4 Aug 2025
Viewed by 140
Abstract
In this work, we introduce a novel method to extract correlations in diagonal quantum states in multi-particle quantum systems, addressing a significant limitation of traditional approaches that require prior knowledge of the density matrices of quantum states. Instead of relying on classical information [...] Read more.
In this work, we introduce a novel method to extract correlations in diagonal quantum states in multi-particle quantum systems, addressing a significant limitation of traditional approaches that require prior knowledge of the density matrices of quantum states. Instead of relying on classical information processing, our method is based on weak couplings and ancillary systems, eliminating the need for classical communication, optimization, and complex calculations. The concept of mutually unbiased bases is intrinsically linked to symmetry, as it entails the uniform distribution of quantum states across distinct bases. Within the framework of our theoretical model, mutually unbiased bases are employed to facilitate weak measurements and to function as the post-selected states. To quantify the correlations in the initial state, we employ the trace distance between the initial state and the product of its marginal states, and illustrate the feasibility and effectiveness of our approach. We generalize the approach to accommodate high-dimensional multi-particle systems for potential applications in quantum information processing and quantum networks. Full article
(This article belongs to the Topic Quantum Systems and Their Applications)
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23 pages, 2193 KiB  
Article
A Virome Scanning of Saffron (Crocus sativus L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies
by Hajar Valouzi, Akbar Dizadji, Alireza Golnaraghi, Seyed Alireza Salami, Nuria Fontdevila Pareta, Serkan Önder, Ilhem Selmi, Johan Rollin, Chadi Berhal, Lucie Tamisier, François Maclot, Long Wang, Rui Zhang, Habibullah Bahlolzada, Pierre Lefeuvre and Sébastien Massart
Viruses 2025, 17(8), 1079; https://doi.org/10.3390/v17081079 - 4 Aug 2025
Viewed by 255
Abstract
Saffron (Crocus sativus L.) is a vegetatively propagated crop of high economic and cultural value, potentially affected by viral infections that may impact its productivity. Despite Iran’s dominance in global saffron production, knowledge of its virome remains limited. In this study, we [...] Read more.
Saffron (Crocus sativus L.) is a vegetatively propagated crop of high economic and cultural value, potentially affected by viral infections that may impact its productivity. Despite Iran’s dominance in global saffron production, knowledge of its virome remains limited. In this study, we conducted the first nationwide virome survey of saffron in Iran employing a high-throughput sequencing (HTS) approach on pooled samples obtained from eleven provinces in Iran and one location in Afghanistan. Members of three virus families were detected—Potyviridae (Potyvirus), Solemoviridae (Polerovirus), and Geminiviridae (Mastrevirus)—as well as one satellite from the family Alphasatellitidae (Clecrusatellite). A novel Potyvirus, tentatively named saffron Iran virus (SaIRV) and detected in three provinces, shares less than 68% nucleotide identity with known Potyvirus species, thus meeting the ICTV criteria for designation as a new species. Genetic diversity analyses revealed substantial intrapopulation SNP variation but no clear geographical clustering. Among the two wild Crocus species sampled, only Crocus speciosus harbored turnip mosaic virus. Virome network and phylogenetic analyses confirmed widespread viral circulation likely driven by corm-mediated propagation. Our findings highlight the need for targeted certification programs and biological characterization of key viruses to mitigate potential impacts on saffron yield and quality. Full article
(This article belongs to the Special Issue Emerging and Reemerging Plant Viruses in a Changing World)
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