Search Results (4,084)

Short-rotation sugar beet (Beta vulgaris L.) cultivation in the Western Forest-Steppe of Ukraine is often accompanied by increased phytopathogenic pressure and impaired rhizosphere functioning, creating a need for biological tools to stabilize the plant–soil system. This study evaluated the effects of arbuscular mycorrhiza and an antagonistic microbial consortium on pathogen pressure, rhizosphere activity, yield, and technological quality of sugar beet under different crop rotations. Field experiments were conducted in 2023–2025 using a three-factor design that included rotation, mycorrhizal inoculation, and microbial inoculation. The highest phytopathogenic pressure was recorded in the maize–soybean–sugar beet rotation, where the cumulative frequency of dominant pathogens reached 94.0% and the root rot severity index in the control was 28.6%. Arbuscular mycorrhiza reduced disease development by 14.6–16.4%, whereas the antagonistic consortium reduced it by 25.6–27.9% relative to the control. Their combined application was most effective, decreasing root rot severity to 9.6–17.1% and increasing root colonization, available phosphorus, and dehydrogenase activity in the rhizosphere. The highest yield (80.5 t/ha) and sugar content (18.5%) were obtained in the soybean–winter wheat–sugar beet rotation under combined inoculation. AMF can improve phosphorus acquisition and mycorrhiza-induced tolerance, whereas antagonistic fungi can directly suppress soil-borne pathogens through competition, antibiosis, and mycoparasitism, their combined use may provide complementary protection in disease-conducive rotations. Overall, integrating arbuscular mycorrhiza with antagonistic microorganisms is a promising approach for reducing pathogen pressure and improving sugar beet performance in short-rotation systems. Full article

Microbiological culture and histology of deep tissue specimens are independent diagnostic criteria in fracture-related infection (FRI). However, the association between these tests has rarely been investigated, particularly in relation to clinical outcome after treatment. Patients undergoing surgery for International Consensus-confirmed FRI were included. All had ≥5 tissue specimens taken for microbiological culture and 2–3 for histology. The correlation between cultured pathogen, histological positivity (defined as ≥5 polymorphonuclear neutrophils/high power field), and outcome at one year after surgery was explored. FRI was confirmed in 430 patients, predominantly in the tibia (194), femur (111), upper limb (70), and ankle (40). A total of 321 (74.7%) were culture-positive and 334 (77.7%) were histology positive, while 265 (61.6%) were positive for both tests. Staphylococcus aureus was cultured in 169 (42.5%), coagulase-negative Staphylococci (CoNS) in 61 (15.3%), and Gram-negatives in 145 (36.3%) cases. Virulent microorganisms were strongly associated with positive histology (odds ratio 2.72; 95% CI 1.61–4.58) but not with clinical failure (OR 1.08; 0.42–2.75). Isolation of S. aureus was significantly associated with positive histology compared to other microorganisms (OR 2.21; 1.27–3.87). Surgery succeeded in 390 (90.7%) patients. Treatment failure was weakly associated with positive microbiology alone (OR 2.03; 0.83–4.96) or positive histology alone (OR 2.13; 0.81–5.6). Combined positive culture and histology was strongly associated with clinical failure (OR 2.3; 1.06–4.96). There was no difference in outcome between virulent and non-virulent bacteria when histology was positive, but both had higher failure rates compared to patients with negative culture or histology. A pronounced inflammatory response, as seen in histology, is a feature of virulent bacterial FRI. However, the presence of virulent infection alone does not dictate clinical outcome without marked inflammation. This suggests that outcome is at least as much related to the host response as to the bacterium. When the pathological response is prominent, this may lead to tissue necrosis, further bacterial invasion of adjacent tissues, osteolysis and loss of fracture stability, contributing to treatment failure. This deserves further study to understand the mechanisms behind this interplay and clinical outcome. Full article

Tomato (Solanum lycopersicum) is a globally important high-value cash crop. However, long-term continuous cropping causes frequent soil-borne diseases and soil microecological imbalance, while overreliance on chemical pesticides leads to pesticide residues and water eutrophication. Plant growth-promoting rhizobacteria (PGPR) are key resources for addressing tomato cultivation challenges, with their functions partly depending on the rhizosphere microenvironment inherently shaped by seedling tray materials. Using rhizosphere soil and substrates of tomato at different growth stages under biomass (BM) and plastic (PM) seedling tray treatments, this study combined culture-independent and culture-dependent techniques to analyze microbial community characteristics and screen high-efficiency PGPR. Results showed that pH and available nitrogen drove microbial community assembly. BM significantly enriched beneficial taxa (e.g., Trichoderma and Bacillus) and enhanced culturable microbial abundance and genetic diversity, while PM enriched potential pathogens (e.g., Fusarium and Pyrenochaeta). The multifunctional strain S25095 from BM, with phosphate-solubilizing, potassium-solubilizing, and indole-3-acetic acid (IAA)-producing abilities, significantly promoted tomato shoot and root growth, outperforming single-functional strains and synthetic consortia. This study reveals the effects of growth stages and seedling tray treatments on tomato rhizosphere microorganisms, providing valuable PGPR resources for tomato cultivation. Full article

The oral cavity is home to a diverse community of microbiota comprising bacteria, viruses, protozoa, and fungi. These microorganisms inhabit several oral niches and play a significant role in supporting both oral and systemic health. The fine balance between the microbial communities can be influenced by genetics and environmental factors, potentially leading to dysbiosis. Alterations in the oral microbiota have been implicated in periodontitis, chronic inflammation, and systemic disease. Tobacco has been identified as a major player in altering the oral microenvironment and disturbing the balance between potentially pathogenic and beneficial commensals. The resulting dysbiosis promotes inflammation and assists in the passage of pathogenic microorganisms into the blood system. This narrative review examines current evidence linking the use of tobacco with the dominance of pathogenic oral bacteria and a dysfunctional immune response. We explore how the chemicals and toxins in cigarettes promote a reduction in oxygen and cause changes in the abundance of anaerobic bacteria. After discussing the mechanistic pathways leading to periodontitis and the entry of microorganisms into the circulation, the review will interrogate previous studies and identify opportunities and priorities for future research. Full article

Recent studies have reported skin microbiome dysbiosis in patients with photodermatoses, featuring enriched Staphylococcus aureus colonization and decreased microbiome diversity. We propose that ultraviolet radiation (UVR), along with atypical antimicrobial peptides, may exert selective pressure on the skin microbiome, while cytokine dysregulation and a reduction in commensal bacteria amplify microbial dysbiosis. Dysbiotic microorganisms further release pathogen-associated patterns and virulence factors, and activate tissue-resident memory T cells, which collectively contribute to local inflammation. These mechanisms establish the skin microbiome as a potential target for early intervention. Potential therapeutic strategies may include antibiotics, phototherapy, bleach baths, phage therapy, and microbiota-based therapies. This review integrates current findings from microbial ecology, molecular biology, and host immunology to outline a conceptual framework linking UVR exposure, microbiome alterations, and cutaneous immune responses, while emphasizing the current limitations and evidence gaps in this field. Full article

The ecological success of termites is closely linked to their associations with gut microbial communities, yet these interactions may also entail potential fitness costs. The effects of gut-associated bacteria on host performance remain poorly understood. Here, we experimentally assessed the effects of a gut-derived Bacillus sp. isolate on the survival and feeding behavior of workers of the termite Constrictotermes cyphergaster (Silvestri, 1901) (Termitidae: Nasutitermitinae), using the opportunistic pathogen Pseudomonas aeruginosa as a reference treatment. Workers were exposed to increasing bacterial doses, and survival analyses revealed that both bacteria induced a significant dose-dependent decline in survival. However, the Bacillus isolate caused a stronger reduction in overall survival compared to controls, whereas P. aeruginosa also reduced survival but with a comparatively weaker effect. Feeding activity was independent of dose, but exposure to Bacillus sp. significantly reduced food consumption, a pattern not observed for P. aeruginosa. These results demonstrate that a gut-derived bacterium can negatively affect host survival and feeding under experimental conditions, highlighting the importance of considering both beneficial and potentially harmful effects of host-associated microorganisms on termite fitness. Full article

Background/Objectives: The increasing burden of multidrug-resistant (MDR) microorganisms and limited resources in healthcare settings are making traditional strategies based on routine isolation of all carriers unsustainable. Methods: A clinical narrative review was conducted by searching PubMed, Web of Science, and Google Scholar for studies published between 2011 and 2025. International guidelines were analyzed to synthesize a sustainable infection control strategy. Results: High-quality evidence, including cluster-randomized trials, indicates that routine contact isolation for endemic ESBL-producing Enterobacterales (IRR: 0.99) and VRE (RR: 0.93) provides no additional benefit over standard precautions. In contrast, strict isolation remains vital for high-threat pathogens such as Carbapenem-Resistant Enterobacterales (CRE), Acinetobacter baumannii (CRAB), and Candidozyma auris due to their high environmental resilience and limited treatment options. Prioritization should be guided by pathogen biology, patient-specific transmission traits (e.g., diarrhea), and facility infrastructure. Conclusions: Traditional one-size-fits-all infection control is increasingly unsustainable under resource constraints. A risk-based approach prioritizing horizontal measures for low-risk pathogens enables a more balanced allocation of limited resources toward high-threat containment. Full article

The growing popularity of plant-based meat alternatives (PBMAs) has increased interest in their microbiological safety, particularly during refrigerated storage. However, despite the rapid expansion of this product category, limited information is available on the microbiological status of industrially produced, heat-treated PBMAs. This study evaluated the microbiological safety of heat-treated PBMAs during refrigerated storage using a descriptive approach. A total of 100 formulations, including salami-type and frankfurter-type products, were produced under standardized industrial conditions and subjected to thermal processing at a core temperature of ≥92 °C. Microbiological analyses were carried out at four storage intervals (day 0, 15, 35, and 60 during storage at 0–4 °C), focusing on selected foodborne pathogens and hygiene indicator microorganisms, together with key physicochemical parameters, including pH, water activity, moisture content, and salt content. Salmonella spp., Listeria monocytogenes and Enterobacteriaceae were not detected in any sample throughout the storage period. Hygiene indicator microorganisms were not detected during early storage (day 0–15), while limited occurrence was recorded at extended storage (day 60), including Escherichia coli (3%), coagulase-positive Staphylococcus aureus (20%), and Bacillus cereus (15%). Detected Staphylococcus aureus levels ranged between 10³ and 10⁵ CFU/g. Overall, the results suggest good microbiological stability during early refrigerated storage, with some microbial presence appearing at extended storage. These findings provide a practical overview of the microbiological safety of heat-treated PBMAs under typical industrial processing and storage conditions. From an industrial perspective, these results may support the establishment of appropriate refrigerated storage limits, post-processing hygiene control, and routine microbiological monitoring strategies for heat-treated PBMAs. Full article

Background: Infection following total knee arthroplasty (TKA) is a challenging complication. Optimal empirical antibiotic therapy and surgical management hinge on up-to-date knowledge of local pathogen distribution and resistance patterns. However, few studies have examined whether geographical factors, specifically rural versus urban residence, influence the microbiology or clinical outcomes of periprosthetic joint infection (PJI) within integrated healthcare systems. The goal of this study was to assess the temporal evolution of bacterial species and antimicrobial resistance in knee PJI over an 11-year period. As a secondary objective, we wanted to evaluate the potential impact of patient residence on microbiological trends and treatment success. Methods: We conducted a retrospective analysis of all patients diagnosed with knee PJI who underwent surgical treatment between 2013 and 2023 at our center. Infections were classified as acute postoperative, acute hematogenous, or chronic. Patient residence was categorized as rural (<5000 inhabitants) or urban. Temporal trends were modeled using Poisson regression, and comparisons between subgroups were performed using Fisher’s exact test and Student’s t-test. Results: A total of 98 patients were analyzed, with 99 microorganisms identified. Gram-positive organisms predominated (72.3%), with Staphylococcus aureus (33.3%) and Coagulase-negative Staphylococci (CoNS) (29.3%) as the most frequent isolates. Resistance to vancomycin was not detected in S. aureus isolates. However, CoNS demonstrated high resistance to fluoroquinolones (55.2%) and rifampicin (20.7%). No significant annual shifts were observed for Gram-positive (IRR = 0.94; 95% CI: 0.86–1.03; p = 0.413) or Gram-negative cases (IRR = 0.75; 95% CI: 0.53–1.05; p = 0.086). Comparing rural versus urban populations, no differences were found in microbiological profiles (Fisher’s exact test, all p > 0.05). Furthermore, clinical treatment success rates were comparable (Rural 69.4% vs. Urban 63.0%, p = 0.500), despite a significantly higher prevalence of diabetes mellitus in rural patients (34.7% vs. 10.2%, p = 0.007). Conclusions: The microbiological landscape of knee PJI has remained stable, with no emergence of multidrug-resistant S. aureus. In our setting, standardized management protocols appeared to be equally effective regardless of patient residence. However, given the single-center nature and sample size of this study, broader multicenter validation is required before these findings can be generalized. Full article

The increasing incidence of foodborne diseases and the limitations of conventional preservation methods have driven the search for safer, more effective, and sustainable antimicrobial strategies. In this context, essential oil nanoemulsions have emerged as promising alternatives to synthetic preservatives due to their broad-spectrum antimicrobial activity, natural origin, and potential applicability across diverse food matrices. This study critically examines the mechanisms of action of essential oils against pathogenic and spoilage microorganisms and discusses how their incorporation into nanoemulsions can overcome limitations such as low volatility, poor solubility, and chemical instability. The physicochemical principles governing the formation and stability of these nanoemulsions are addressed, alongside the influence of food matrix components (proteins, lipids, polysaccharides, pH, and ionic strength) on antimicrobial efficacy. Evidence from real food systems indicates that nanoemulsions often outperform free essential oils, although the magnitude of the effect strongly depends on matrix complexity and processing or storage conditions. The review further discusses critical aspects related to toxicity, safety, bioaccessibility, sensory acceptance, and regulatory considerations, as well as emerging evidence on adaptive responses and antimicrobial resistance risks associated with sublethal exposure to essential oil nanoemulsions. It is concluded that, despite their considerable technological potential, the industrial application of essential oil nanoemulsions requires further systematic studies in real foods, standardized protocols, and integrated risk assessments to ensure efficacy and safety under practical conditions. Full article

This study pioneered the application of Poria cocos solid-state fermentation (SSF) to Tartary buckwheat (TB). We aimed to enhance its nutritional value, antioxidant activity, and bioaccessibility through fungal biotransformation. Notably, SSF significantly increased protein (by 15.53%) and polysaccharides (by 158%) in TB, alongside a 4.87% improvement in DPPH radical scavenging capacity. Principal component analysis identified 5-day fermentation (FTB-5) as the optimal process, achieving the highest comprehensive score. Furthermore, SSF modified TB’s aroma profile (e.g., increasing 2(3H)-Furanone, 5-methyl by 352.02%) and optimized its amino acid composition, with essential amino acids rising by 12.90%. Critically, in vitro digestion confirmed a higher release rate of bioactive compounds in FTB-5 compared to raw TB. When applied to Chinese steamed bread, FTB-5 imparted a superior sensory score, with a soft texture and an appealing color. This study establishes Poria cocos SSF as a novel strategy for TB valorization, bridging traditional fungal biotechnology with functional food development. Full article

The equine reproductive microbiota has emerged as an important factor influencing reproductive health and fertility in both mares and stallions. Traditionally, the equine uterus was considered sterile, and microbial presence was interpreted primarily in the context of infection. However, sequencing-based studies have demonstrated that the reproductive tract, including the uterus and semen, contains detectable microbial communities or microbial DNA signatures, challenging this traditional paradigm. In mares, the vaginal microbiota is consistently dominated by Firmicutes, Bacteroidetes, Proteobacteria, and Actinobacteria, whereas the uterine environment represents a low-biomass niche in which interpretation is complicated by contamination risk and the inability of sequencing-based methods to distinguish viable from nonviable microorganisms. Culture-based studies consistently identify opportunistic pathogens such as Streptococcus equi subsp. zooepidemicus, Escherichia coli, and Pseudomonas aeruginosa in association with endometritis and persistent breeding-induced endometritis, while sequencing-based studies suggest broader community-level dysbiosis rather than simple pathogen presence. In stallions, semen is not sterile and commonly contains taxa such as Porphyromonas, Corynebacterium, Peptoniphilus, and other opportunistic bacteria that may influence sperm quality and microbial transmission to mares during breeding. However, most reported associations remain correlative, and direct longitudinal evidence for persistent stallion-to-mare microbial transmission is limited. This review synthesizes current evidence on microbial composition, hormonal influences, dysbiosis, and reproductive implications of the equine reproductive microbiota, integrating culture-based and sequencing-based findings while emphasizing methodological limitations associated with low-biomass samples. Improved understanding of these microbial ecosystems may support more evidence-based reproductive diagnostics and microbiome-informed fertility management in horses. Full article

There is growing concern about the quality of sand on beaches, as users tend to spend most of their time on the sand rather than in the water. Numerous pathogenic agents have reportedly been isolated from sand, including bacteria, nematodes and opportunistic fungi. The ability of sand to retain pollutants and facilitate the transmission of pathogens raises public health concerns. We analysed sand-monitoring data from the 2024 and 2025 bathing seasons on Blue Flag beaches to find trends and patterns in total fungal counts, enterococci, and E. coli. The values recorded for microorganisms showed considerable variability, which may reflect the possible combined influence of multiple climatic, environmental, and anthropogenic factors contributing to their presence in beach sand. Our findings suggest that the total fungal count on coastal beaches may be influenced by periods of rainfall, which increases the fungal load in the sand. Values recorded from inland beaches vary considerably between beaches which may reflect the influence of local environmental characteristics, particularly vegetation and beach morphology, although the smaller number of inland samples also makes it difficult to define clear patterns and consistent reference values for this parameter. Bacterial indicators may be particularly influenced by occasional anthropogenic disturbances and contamination events. This study adds significantly to the understanding of the microbiological quality of beach sand, encouraging the integration of sand monitoring into environmental surveillance and management programmes. Full article

Antimicrobial resistance (AMR) is emerging as one of the most serious global health problems, necessitating the urgent development of alternative approaches to pathogen control. The present study describes the synthesis and characterization of a novel iodinated BODIPY derivative (BODIPY5), designed as a highly efficient photosensitizer for antimicrobial photodynamic inactivation (aPDI). The molecular design of the compound involves the introduction of two iodine atoms into the BODIPY5 core, which induces a “heavy atom effect”, accelerates the intersystem transition from the singlet to the triplet state, and leads to increased generation of singlet oxygen upon irradiation with visible light. Photophysical measurements show a significant fluorescence quenching of BODIPY5 compared to its unsubstituted counterpart, which is a direct indicator of increased photodynamic activity. The compound’s antimicrobial efficacy was tested in a homogeneous medium and after immobilization on cotton textiles via physical adsorption. In solution, BODIPY5 nearly eliminated the model bacterial strains B. cereus and P. aeruginosa at a low concentration of 10 µg/mL under light, with cell viability below 1%. The functionalized cotton fabric exhibits pronounced self-disinfection properties, retaining high photodynamic activity against the Gram-negative pathogen P. aeruginosa. Scanning electron microscopy results confirm extensive morphological damage and loss of structural integrity in bacterial cells on the treated textile following irradiation. The non-specific mechanism of action, which generates reactive oxygen species (¹O₂) in situ, prevents the development of bacterial resistance and makes the developed material a promising candidate for use in hospital environments, including antibacterial clothing and protective equipment. Full article

Microorganisms can aggregate and organise into structured communities embedded within an exopolysaccharide-based matrsix, which serves as a protective barrier and a functional environment around microbial cells. The formation of biofilms is widely recognised as a pivotal factor in bacterial virulence, impeding the efficacy of antimicrobial agents and hindering immune responses, whilst concomitantly contributing to the development of antimicrobial resistance and the onset of persistent infections. Biofilm formation is a tightly regulated and dynamic process, controlled by quorum-sensing mechanisms and profoundly influenced by environmental factors and nutrient availability. The objective of this review is to elucidate the significance of biofilms in clinical settings, with a particular focus on their role in the pathogenesis of infectious diseases. Particular attention is devoted to biofilm-associated infections and infections related to invasive medical devices, with a particular emphasis on the most prevalent microbial pathogens, which include S. aureus, S. epidermidis, P. aeruginosa, E. coli, K. pneumoniae, A. baumannii and various species of Candida. Furthermore, the present review encompasses biofilm-associated chronic infections, conditions manifesting in predisposed patients, including individuals affected by cystic fibrosis. This review further examines the most recent strategies for combating antibiotic resistance in bacterial biofilms. This review focuses on recent biofilm pathogenesis advancements, with a focus on diagnosis challenges and the need for new ways to disrupt biofilm integrity. Full article