Search Results (619)

Intensive nitrogen (N) fertilization in Phyllostachys edulis (Carrière) J.Houz. forests increases productivity but also accelerates nitrous oxide (N₂O) emissions, posing a challenge to balancing forest yield with environmental sustainability. Silicon (Si), a beneficial element for bamboo, has emerged as a potential regulator of soil nitrogen (N) cycling, but its role in controlling N₂O emissions in forest ecosystems is not fully understood. In this study, we conducted a factorial pot experiment using P. edulis forest soil, with data collected over two years, but only the second-year results were analyzed, with controlled N (0, 80, and 160 mg kg⁻¹) and Si (0, 25, and 50 mg kg⁻¹) additions. The experiment lasted two years, but only the second-year data were used for analysis. We investigated how Si affected soil inorganic N dynamics, enzyme activities, plant growth, and cumulative N₂O emissions. Si addition significantly reduced N-induced N₂O emissions by up to 53%, with the strongest mitigation observed under moderate N input (p < 0.05, two-way ANOVA). This effect was associated with lower activities of AMO, NaR, and NiR, together with reduced availability of oxidized N substrates, indicating that Si mitigated N₂O emissions mainly by constraining upstream N transformation processes rather than by directly suppressing N₂O fluxes. Si addition also tended to promote plant biomass accumulation. These findings suggest that integrating Si fertilization into bamboo forest management may help improve nutrient use efficiency while mitigating greenhouse gas emissions. Full article

Oleaginous microorganisms usually accumulate large amounts of lipids under nitrogen limitation and in a carbon-abundant environment. However, how cells sense changes in nitrogen and carbon levels in the culture medium remains a research hotspot. Previous studies have found that the target of rapamycin complex 1 (TORC1) plays a core role in lipid accumulation in oleaginous microorganisms. The results of the Kog1 (the member proteins of TORC1) knockout strain constructed earlier by our group showed that the Kog1 negatively regulated lipid accumulation in the oleaginous fungus Mucor circinelloides. In this study, transcriptomic analysis of the knockout and control strains under nitrogen-limited and nitrogen-sufficient culture was carried out to investigate significant differences in lipid accumulation. Kog1 knockout led to a significant decrease in cell dry weight and an increase in lipid content in M. circinelloides. The transcriptomic results showed that genes encoding the glyoxylic acid cycle and genes encoding acetyl-CoA carboxylase (ACC), fatty acid synthase (FAS), and Δ9 desaturase in lipid synthesis were upregulated to varying degrees under both conditions, indicating enhanced lipid metabolism that ultimately led to increased lipid accumulation. The knockout of the Kog1 gene also activated the pyruvate–acetaldehyde–acetate metabolic axis and significantly modified the branched-chain amino acid metabolic network, suggesting that Kog1 knockout reprograms the pathway of branched-chain amino acid synthesis and degradation, shifting the carbon flux from amino acid metabolism to acetyl-CoA accumulation. In addition, the gene encoding the SSK1p transcription factor, which participates in the nutrient stress response, was upregulated 41.9- and 51.9-fold in the Kog1 knockout strain compared with the control strain under nitrogen-limited and nitrogen-sufficient conditions, respectively. Full article

Suspended sediment plays a critical role in river ecosystem health, nutrient transport, and water quality, while also affecting navigation infrastructure and reservoir sedimentation in regulated rivers. A sound understanding of sediment dynamics in complex river systems consisting of natural lakes and engineered navigation structures remains a critical challenge for river management and water quality assessment. This study investigates the longitudinal patterns of suspended sediment concentration (SSC) along a ~500-km reach of the Upper Mississippi River containing Lake Pepin and multiple lock-and-dam structures. In this study, we analyze remotely sensed SSC estimates from the RivSED database (2001–2019). The SSC datasets were then integrated with in situ streamflow measurements and potential soil erosion to characterize sediment supply and transport dynamics and relate with upstream contributing watershed’s attributes. Results reveal distinct sediment behavior patterns: (1) Lake Pepin functions as a significant sediment trap, creating a clear discontinuity in SSC with mean concentrations decreasing from ~25 mg/L upstream to ~13 mg/L within the lake; (2) longitudinal SSC profiles show re-establishment patterns downstream of the lake, reaching ~23 mg/L approximately 100 km below the outlet; (3) strong positive correlation (r = 0.80, R² = 0.64, p < 0.001) exists between watershed sediment export and river-reach-scale sediment fluxes. Temporal analysis across these upstream monitoring stations shows sediment export rates ranging from 10,000 to 200,000 tons/year, with notable inter-annual variability driven by discharge patterns. This research demonstrates the utility of combining a spectrum of datasets for exploring sediment dynamics in complex riverine systems. Though the current study is a case study, the study results provide crucial insights for navigation management, ecosystem health assessment, and watershed management strategies in similar settings. Full article

Water dynamics and nutrients are widely recognized as the main triggers of phytoplankton blooms. These factors may control the stability of marine ecosystems. Penzhina Bay and the Shelikhov Gulf are famous for their high tidal dynamics in comparison with the basins of the World Ocean and for being the feeding places of Bowhead whales. Here, we study the dynamics and thermohaline structure of water; nutrients; isotopic signatures of δ¹⁵N–$\mathrm{N}{\mathrm{O}}_3^{-}$ and δ¹⁸O–$\mathrm{N}{\mathrm{O}}_3^{-}$; as well as chlorophyll a in Penzhina Bay, the Shelikhov Gulf, and the Penzhina River to understand the features of an ecosystem with intense tidal dynamics in the subpolar region. This work is based on data obtained in three cruises of the R/V “Akademik Oparin” in the period from 2023 to 2025, with speed boat observations in the Penzhina River from May to October, including the flooding peak in June. The observations covered cases with tides from 7 to 13.4 m in height. The interaction between tides and river runoff was observed to supply dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphorus (DIP) from the sea and dissolved silicate (DSi) from the river. The “white nights” in July, combined with the increased supply of nutrients, are good conditions for phytoplankton blooms, and as a result, the concentration of chlorophyll a in the study area was observed to be up to 39 µg/L. High primary production supports the food chain, and this is probably the main reason why Bowhead whales come to feed in the summer. The DIN/DIP ratio indicates DIN as a limiting factor in most of Penzhina Bay and throughout the Shelikhov Gulf. At the same time, the DSi/DIP ratio at a significant distance from the mouth of the Penzhina River is close to 0, indicating unfavorable conditions for diatoms. The DSi limit can cause the blooming of dinoflagellates, which sometimes occurs in this region. Full article

Background: Stable isotope-based analytical methods have brought about a significant transformation in the study of energy nutrient metabolism, enabling precise in vivo measurement of metabolic fluxes at systemic, tissue, and organ-specific levels in both healthy and diseased states. The regulation of these metabolic fluxes is governed by dynamic interactions between proteins, lipids, carbohydrates, and their precursors—such as glucose, fatty acids, and amino acids—as well as final metabolic products. Discussion: Advanced analytical technologies, including nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS), which can offer enhanced precision, have been developed for investigating nutrient metabolism and fluxes in humans, providing precise information on metabolic pathways. These techniques have primarily utilized stable isotopes, such as ²H, ¹³C, ¹⁵N, and ¹⁸O, which have largely replaced radioactive isotopes and are now central to metabolic research. These isotopes have been used to label glucose, fatty acids, or amino acids—the main biomolecular precursors—enabling detailed investigation at systemic, tissue, and organ-specific levels of carbohydrate, lipid, and protein metabolism, and revealing pathway alterations associated with diseases conditions, such as diabetes, non-alcoholic fatty liver disease, cardiovascular disorders, and cancer. The use of deuterium oxide (D₂O) has allowed for long-term metabolic studies, providing a cost-effective and less invasive means to monitor metabolic changes over days to months. Total daily energy expenditure can be measured in free living conditions by the doubly stable isotopes ²H- and ¹⁸O-labeled water method. Stable isotope tracing, combined with advanced imaging and modeling, has also been instrumental in assessing body composition, energy expenditure, and nutrient bioavailability. Collectively, these methods have expanded our understanding of human physiology and disease, supporting the development of novel diagnostic tools, the identification of new biomarkers, and the tailoring of nutritional and therapeutic interventions. Conclusions: This review aimed to provide an overview of the applications of stable isotopes for the study of energy nutrient metabolic pathways. The ongoing integration of stable isotope approaches with artificial intelligence, omics technologies, and miniaturized detection techniques could promise to further refine our understanding of human metabolism and drive advances in personalized medicine. Full article

The fungal pathogen Candida albicans coordinated metabolism, organelle homeostasis, and stress responses for adapting to diverse host environments and maintaining virulence. While transcriptional control of these processes has been extensively studied, the contribution of post-transcriptional regulation remains incompletely understood. Here, we identify the P-body component Lsm1 as a critical factor of metabolic adaptation, mitochondrial homeostasis, and pathogenicity in C. albicans. Transcriptomic analysis revealed that loss of Lsm1 causes global transcriptional imbalance, leading to dysfunction of amino acid metabolism, mitochondrial function, endocytic trafficking, and autophagy processes. This dysfunction is accompanied by diminished TORC1 activity. Due to the aberrant TORC1 regulation caused by loss of Lsm1, ATG mRNA stability and autophagy flux was impaired under nutrient-rich condition and nitrogen starvation condition. In this context, the lsm1Δ/Δ cells established an adaptive metabolic and redox state characterized by altered NAD⁺/NADH and NADP⁺/NADPH balance, and enhanced antioxidant capacity. Moreover, the lsm1Δ/Δ cells displayed the defects in hyphal development, biofilm formation, and host cell interaction, and exhibited the attenuated virulence in a murine infection model. Together, our findings revealed that Lsm1-mediated post-transcriptional regulation is associated with the maintenance of amino acid metabolism, mitochondrial function, and TORC1 activity to fungal virulence, revealing a potential therapeutic target for C. albicans infections. Full article

The progressive decline in functional β-cell mass in Type 2 Diabetes (T2D) is increasingly recognized not as a simple apoptotic loss, but as a complex erosion of cellular identity termed “dedifferentiation.” Central to this phenotypic shift is the metabolo-epigenetic axis, where mitochondria act as the primary sensing hub, transducing nutrient flux into biochemical signals that govern the chromatin landscape. This review synthesizes current evidence on how mitochondrial metabolites—including Acetyl-CoA, α-ketoglutarate, and NAD+—serve as obligatory co-factors for the epigenetic machinery. We explore how chronic metabolic stress triggers a “Systemic epigenetic destabilization,” leading to the loss of lineage-specific markers and the formation of persistent “metabolic scars.” Furthermore, we discuss the clinical implications of these changes, specifically regarding the phenomenon of metabolic memory and the molecular limits of β-cell reversibility. By integrating foundational transcriptional studies with emerging epigenomic data, we propose that targeting the mitochondrial–epigenetic axis offers a strategic window for re-differentiating failing β-cells and restoring glycemic homeostasis. Full article

Detection of brown spot needle blight (BSNB) disease caused by the fungal pathogen Lecanosticta acicola (Thum.) Syd. has increased significantly at commercial loblolly pine (Pinus taeda L.) plantations across the southeastern United States in recent years. Historically, it has been a serious problem in longleaf pine (Pinus palustris Mill) during the grass stage of seedlings, when the environment is more conducive to fungal infection. However, since 2016, confirmed cases of the disease on loblolly pines have increased in several states, including AL, AR, FL, GA, LA, MS, SC, TN, and TX. We investigated the distribution pattern of confirmed cases of BSNB on loblolly pine between 2016 and 2023, identified site-specific factors, and evaluated the historical standardized precipitation index (SPI) value record over the past four decades. Our results showed that extended periods of above-normal SPI values are associated with BSNB spatial distribution patterns, particularly where the disease has been widely reported in AL, AR, LA, and MS. We observed significant reduction in tree height and dbh in severely infected versus healthy trees at the six study sites evaluated in 2023. Excessive rainfall and prolonged water saturation associated with historical 5-Year SPI values suggest that vulnerable loblolly pine seedlings (depending on genetic family) are more likely to be predisposed to L. acicola infection due to persistent stress from reduced soil nutrient flux and other physiological processes of the host. Understanding the effect of precipitation patterns on cases of BSNB is an important step toward preventing or minimizing the future impact of the disease on commercial plantations in the Southeast. Full article

Background: Tumor cells can reprogram their metabolism, constituting a hallmark of cancer that plays a crucial role in tumor progression. As tumor cells exhibit an increased demand for nutrients, e.g., amino acids, they rely on extracellular sources and show deregulation of transport proteins. Among these, SNAT1 (SLC38A1) is described as the loader for glutamine that is responsible for the main influx of this amino acid. The aim of this study was to assess the molecular function of SNAT1 in melanoma regarding its role in amino acid transport and regulation of cellular metabolism. Methods: siPool-mediated downregulation of SNAT1 expression in melanoma cell lines was used to investigate the molecular function of this protein. Glutamine transport was assessed by measuring the intracellular and extracellular concentrations of glutamine. Regulation of downstream effectors was evaluated with qRT-PCR and Western Blot. Metabolism was investigated by performing Seahorse flux analysis. Mitochondrial staining was examined via flow cytometry. Protein interaction was assessed with Co-IP, and in silico modeling of protein interaction was performed with AlphaFold3. Results: In this study, we uncovered the new finding that SNAT1 is not primarily implicated in glutamine influx into melanoma cells but in signaling in response to extracellular glutamine. We identified P62 and cMYC as downstream effectors of SNAT1. By activating the P62/cMYC-axis and target genes of cMYC, SNAT1 modulates the metabolism of melanoma cells depending on the glutamine level. SNAT1 and P62 are interaction partners. Conclusions: This finding newly suggests that SNAT1 may function as a sensor or receptor (“transceptor”) for glutamine rather than being a direct and primary glutamine transporter, and could open up new therapeutic options targeting melanoma cells. Full article

Light spectral composition plays a central role in regulating plant growth, morphology, nutrient uptake, and pigment biosynthesis, particularly in controlled-environment agriculture. This study investigated the effects of targeted LED spectral modulation, focusing on green light deprivation and different red-to-blue (R:B) ratios at constant photon flux density, on morphological traits, mineral composition, and photosynthetic pigments in Salvia officinalis L. and Cannabis sativa L. grown under controlled conditions. Plants were cultivated under three LED treatments providing equal light intensity but differing in spectral composition. Morphological parameters, mineral nutrients, inorganic anions, and photosynthetic pigments were assessed at harvest. Total biomass production was not significantly affected by the light treatments in either species; however, clear species-specific responses were observed. In S. officinalis, higher R:B ratios promoted stem elongation without affecting leaf number or fresh weight, whereas in C. sativa, the higher R:B ratio significantly increased leaf number. Green light deprivation and red–blue enrichment generally enhanced mineral accumulation and nitrogen content, although the magnitude and direction of these effects varied between species. Photosynthetic pigment responses were more pronounced in hemp, with increased chlorophylls and carotenoids under green light deprivation, while salvia showed a selective increase in carotenoids under higher R:B ratios. Overall, these findings emphasize the importance of species-specific LED spectral optimization to improve physiological performance and nutritional quality in indoor cultivation of medicinal plants. Full article

In permanently submerged coastal wetlands, interactions between biogeochemical processes and microbial communities strongly influence greenhouse gas (GHG) fluxes. To improve our understanding of how redox-driven processes shape GHG dynamics in these ecosystems, we investigated the relationships among iron (Fe) pools, microbial dynamics, and the potential GHG production in subaqueous soils from an interdunal wetland in San Vitale Park (Italy), permanently submerged and affected by seasonal oscillations of the saline water table. Two subaqueous soil columns (WAS-2 and WAS-4), collected from similar settings, were analyzed. Surface layers of WAS-4 showed higher salinity and carbonate content, whereas WAS-2 was characterized by overall higher Fe concentrations. Distinct vertical distributions of organic matter and sulfur (S) were shown along depth. Laboratory incubations revealed that nitrous oxide (N₂O) production was up to ten times higher in WAS-2 than in WAS-4, with peaks in the top 13–14 cm, consistent with more active nitrification-denitrification in surface layers. Methane (CH₄) and carbon dioxide (CO₂) fluxes decreased with depth, reflecting reduced availability of labile carbon. Methanomicrobiales dominated CH₄-producing layers, indicating hydrogenotrophic methanogenesis, while amoA-carrying Nitrosomonadales and Thaumarchaeota, occurred in shallow, organic-rich layers where ammonia supported nitrification and denitrification. Denitrifiers mainly belonged to α- and β-Proteobacteria, consistent with their direct contribution to N₂O peaks. Spearman’s correlations showed N₂O positively correlated to sulfur and labile carbon (C), supporting denitrification under moderately reducing conditions. CH₄ and CO₂ positively correlated with organic C (Corg), total nitrogen (TN), and reactive Fe forms, reflecting redox-mediated microbial respiration and methanogenesis. Trace elements (B, Cr, Cu, Ni) acted as micronutrients or inhibitors depending on concentration. Canonical correspondence analysis indicated depth-structured links among gas fluxes, soil chemistry (Corg, TN, S/C, CaCO₃, P), and microbial distributions: surface layers, rich in labile C and nutrients, supported active bacteria and archaea involved in decomposition, nitrification, and denitrification, whereas deeper layers hosted oligotrophic archaea adapted to inorganic substrates. Overall, Fe pools appeared to be associated with soil processes relevant to GHG dynamics, although the extent of their regulatory role remains uncertain due to potential alterations of redox-sensitive Fe fractions during sample handling. These results contribute to broader efforts to predict GHG emissions in submerged wetland soils by linking redox stratification, inorganic chemistry, and microbial functional groups. Full article

A revised two-stage model of preeclampsia is proposed, centering on an autophagy-dependent requirement for extravillous trophoblast entry into the proximal one-third of the myometrium. The One-Third Myometrium Enigma, introduced here, denotes the unresolved physiological rule that early placentation requires trophoblasts to traverse decidua and reach the proximal one-third of myometrium under hypoxia and nutrient scarcity. The hypothesis posits a timed rise in basal autophagy to sustain trophoblast energy homeostasis and invasion, accompanied by TFEB-driven lysosomal programs that enable villous cytotrophoblast syncytialization. Autophagic dysfunction could contribute to shallow invasion, chronic placental hypoxia, fetal growth restriction, and release of placental injury signals preceding maternal syndrome. Potential failure modes include reduced autophagic flux due to inhibition of autophagosome to lysosome fusion or mistimed persistence of hypoxia signaling, such as prolonged HIF-1α activity. Collectively, this evidence suggests that impaired autophagy is a testable contributor to preeclampsia pathogenesis. Predictions include early risk stratification with circulating autophagy markers and extracellular vesicle microRNAs, and therapeutic benefit from autophagy modulation that targets AMPK or mTOR or activates TFEB with safety constraints. This framework reframes preeclampsia as a disorder of placental quality control and specifies where and when autophagy may be required. Full article

Urban wetlands are assumed to contribute to nitrous oxide (N₂O) emissions; however, the microbial mechanisms underlying enhanced N₂O fluxes in urban wetlands and differences in microbial responses between aquatic and soil compartments have not been clearly identified. Here, we characterized the nitrogen (N) cycling microbial communities and their functional metabolic pathways in urban and rural wetlands using metagenomics and N₂O flux measurements. Results showed that urbanization drove a 6~8-fold increase in N₂O fluxes from urban wetlands compared to rural wetlands. Structural equation modeling (SEM) confirmed that urbanization intensity was a primary driver (standardized coefficients: 0.72 for soil and 0.92 for water). In wetland water, N₂O emissions were negatively correlated with inorganic nutrient concentrations (coefficient = −0.62). Aquatic microbial communities exhibited substantial taxonomic shifts but preserved network connectivity, indicating adaptive strategies for surviving urban perturbations at the cost of reduced functional redundancy. In wetland soil, microbial communities maintained stability under urbanization, which was attributed to environmental buffering from heterogeneous microenvironments. Soil N₂O emissions were positively linked to microbial alpha diversity (coefficient = 0.79). Furthermore, urban wetlands enriched genes mediating nitrification and denitrification while depleting genes associated with N fixation and organic N metabolism. This functional shift reflects microbial specialization in processing elevated reactive N (Nr) inputs from urban sources, trapping urban wetlands in an “N loss loop” that reinforces high N₂O fluxes. This study elucidates the microbial mechanisms governing wetland N₂O emissions under urbanization, thereby enhancing understanding of microbially mediated N cycling in the urban wetland ecosystem. Full article

European peatlands have been extensively drained for agriculture, resulting in substantial carbon losses and widespread soil degradation. Peatland restoration is therefore a global priority, with rewetting recognised as a key strategy for mitigating greenhouse gas emissions and climate change. This review synthesizes current knowledge on soil transformations following the rewetting of agriculturally drained peatlands in Europe. We describe major degradation processes induced by drainage, including land subsidence, organic matter oxidation, and microbial community shifts from anaerobic to aerobic conditions. We then examine key rewetting approaches—ditch blocking, controlled flooding, and paludiculture—and their intended restoration outcomes. Rewetting fundamentally alters soil physical, chemical, and biological properties by raising and stabilizing water tables, restoring anoxic conditions, and modifying nutrient cycling and microbial processes. Findings indicate long-term stabilization of organic carbon in peat soils under anaerobic conditions, but also reveal trade-offs between reduced CO₂ emissions and increased CH₄ and N₂O fluxes. Vegetation–soil interactions strongly influence recovery trajectories, and paludiculture offers potential to align agricultural land use with climate mitigation objectives. Finally, we evaluate current research methodologies and identify major knowledge gaps, including limited long-term data and insufficient integration of hydrological, chemical, and biological processes. We highlight priorities for future research to support evidence-based rewetting strategies that deliver climate benefits while maintaining ecological and economic sustainability in European peatlands. Full article

Background/Objectives: Kidneys from marginal donors are more susceptible to ischemia–reperfusion injury (IRI). To diminish the deleterious effects of IRI, mitochondria should be preserved optimally between donation and transplantation. It is unknown which macronutrients are imperative to support mitochondrial function during normothermic preservation. The aim of this study is to investigate the effect of different macronutrient compositions on mitochondrial function during prolonged normothermic incubation of precision-cut kidney slices. Methods: Both porcine (n = 8) and human (n = 5) kidneys were studied. After warm ischemia and cold preservation, precision-cut kidney slices (PCKS) were made and incubated in different incubation media under normothermic conditions. PCKS were incubated with all different combinations of glucose, glutamine and/or fatty acids. At zero, 24 and 48 h, mitochondrial function and metabolite levels were assessed. Results: After 48 h of incubation, ATP levels were significantly higher with glucose and glutamine or fatty acids and glutamine, compared to incubation without nutrients (p = 0.001 and p = 0.003, respectively). Also, mitochondrial oxygen fluxes were higher with all nutrients compared to no nutrients (ADP stimulated basal respiration p = 0.040; proton leak p = 0.001 and maximal respiration p = 0.039). Conclusions: The addition of multiple macronutrients during prolonged normothermic incubation increases the mitochondrial function of PCKS. These data pave the way for optimising the nutritional support for ex vivo perfusion of marginal kidneys. Full article