Search Results (3,256)

Bamboo is a rapidly renewable lignocellulosic resource widely used in construction, composites, and bio-based materials. However, its practical applications are often limited by high hygroscopicity, biological degradation, and dimensional instability under humid conditions. This review synthesizes current research on bamboo structure, microbial interactions, and material modification strategies to better understand how bamboo-associated microbiomes influence both deterioration and potential material enhancement. We summarize conventional chemical and thermal modification approaches that improve hydrophobicity, durability, and mechanical stability while also discussing their technical limitations. Emerging studies on bamboo-associated microbial communities reveal complex interactions between fungi, bacteria, and lignocellulosic substrates, including enzymatic degradation, nutrient cycling, and potential bioprotective functions. Advances in multi-omics technologies have further provided insights into the functional gene pools and metabolic pathways involved in bamboo–microbe interactions. Recent conceptual developments in microbiome engineering and engineered living materials (ELMs) suggest possible future directions for integrating microbial functionality into bamboo-based materials. However, direct experimental evidence for microbial enhancement of bamboo structural performance remains limited. Future interdisciplinary research integrating material science, microbial ecology, and synthetic biology will be essential to evaluate the feasibility and safety of such biohybrid systems. Full article

Split nitrogen (N) application is an important agronomic measure for improving wheat yield and quality, yet how rhizosphere nitrogen-transforming microbes respond to split N strategies and the underlying mechanisms remain unclear. This study investigated the effects of six N treatments, including control, basal application, jointing-stage soil topdressing, and foliar applications at booting, anthesis, and 10 days post-anthesis, on the community structure and diversity of key rhizospheric nitrogen cyclers (ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), and nitrite-oxidizing bacteria (NOB)) in wheat. Results showed that AOB and NOB alpha diversity were significantly modified by split N application. N application at anthesis enhanced AOB richness and diversity more than the later application, while concurrently decreasing NOB diversity. Booting-stage application enriched Nitrosospira and Nitrosomonas in the AOB community, whereas anthesis application increased Nitrososphaera sp. JG1 in AOA, but decreased Candidatus Nitrospira inopinata in NOB. Redundancy analysis identified soil pH, moisture, organic carbon, and key enzyme activities as the main drivers of microbial community assembly. Although no significant differences were observed in key agronomic traits among treatments, the 10 days post-anthesis treatment showed numerically superior yield and N uptake. Notably, AOB community evenness was significantly positively correlated with grain yield, protein yield, and N uptake, whereas NOB community diversity showed negative correlations. These findings demonstrate that split N application, particularly late foliar spray at 10 days post-anthesis, can modulate soil physico-chemical properties to selectively shape nitrogen-transforming microbial communities (notably AOB) in the wheat rhizosphere. This study provides a theoretical foundation for designing precise N management strategies rooted in rhizosphere ecology, with the goal of simultaneously improving yield, grain quality, and nitrogen use efficiency. Full article

Emerging evidence highlights the gut microbiota as a critical modulator in the pathogenesis of heart failure (HF), particularly among patients with type 2 diabetes mellitus (T2DM). Dysbiosis contributes to systemic inflammation, endothelial dysfunction, and adverse cardiac remodeling via microbial metabolites such as trimethylamine N-oxide (TMAO) and short-chain fatty acids (SCFAs). However, the therapeutic intersection between the gut microbiota and pharmacological interventions remains insufficiently integrated. Sodium-glucose cotransporter-2 inhibitors (SGLT2is), a cornerstone of T2DM management, confer cardioprotective effects that may involve microbiota-mediated pathways. This review provides a novel synthesis of how SGLT2is influence gut ecology, specifically through altered glucose excretion and osmotic shifts, to potentially restore SCFA-producing taxa. By delineating the structural transitions from gut physiology to SGLT2i-modulated cardiac outcomes, we emphasize the gut–heart axis as a pivotal therapeutic target. This focused framework offers new insights into the triadic interplay between microbiome stability and cardiometabolic health, moving beyond traditional glucose-centric paradigms. Full article

Wetland degradation in soda saline–alkali ecosystems can profoundly alter belowground microbial communities, yet its effects on bacterial phylogenetic distribution and predicted ecological characteristics remain insufficiently understood. This study investigated soil physicochemical properties, enzyme activities, and bacterial communities across a wetland degradation gradient in the Halahai Provincial Nature Reserve, China, including reed wetland (RW), meadow steppe (MS), and degraded Suaeda saline patches (DS). Soil analyses were integrated with 16S rRNA gene amplicon sequencing, phylogenetic reconstruction, and FAPROTAX and BugBase prediction. DS showed significantly higher pH and electrical conductivity, but lower soil water content, organic carbon, nutrient availability, and urease activity than RW and MS. Alpha diversity analysis indicated that DS had lower bacterial richness and diversity, but higher dominance, whereas RW and MS did not differ significantly. Beta-diversity analysis revealed clear habitat-dependent separation, with DS harboring the most distinct community structure. Taxonomic and phylogenetic analyses indicated enrichment of Gemmatimonadota and the RCP2-54 lineage in DS, whereas RW and MS were more strongly associated with Pseudomonadota, Acidobacteriota, and related groups. Predicted functional and phenotypic analyses further suggested a shift toward stress-related and degradation-associated traits in DS. These findings demonstrate that wetland degradation reshaped the taxonomic composition, phylogenetic distribution, and predicted ecological characteristics of soil bacterial communities in this fragile ecosystem. Full article

Boron (B) is increasingly recognized as more than a trace dietary element, emerging as a context-dependent organizer of molecular interactions at the host–microbiome interface. B exhibits reversible covalent chemistry driven by Lewis’ acidity and selective affinity for cis-diol-rich biomolecules, enabling dynamic complexation with polyols, glycans, and phenolic ligands that dominate the intestinal mucus environment and shape microbial ecology. We synthesize evidence supporting an architecture-based framework in which B modulates biological function by conditioning the physicochemical context of microbial communication rather than acting as a single-pathway effector. Central to this model is spatial bioavailability, distinguishing plasma-accessible boron from microbiota-accessible boron (MAB), species that persist in the lumen and mucus layer long enough to influence interface-level processes. We propose that insufficient or altered MAB availability may contribute to dysbiosis (DYS) by destabilizing quorum-associated coordination, signal persistence, and mucosal microstructure, thereby promoting barrier dysfunction and inflammaging. Particular attention is given to B-mediated symbiotaxis, a hypothesis-driven concept describing how B-containing molecular assemblies may bias microbial communities toward cooperative, barrier-supportive configurations and reduce ecological volatility. We identify key knowledge gaps and experimental priorities (speciation-aware measurements, signal-centric readouts) necessary to determine when, where, and how B-mediated molecular architecture may counteract DYS and support healthspan. Full article

Microplastics in freshwater environments provide persistent substrates for microbial colonization, forming the plastisphere. However, how trophic conditions shape plastisphere bacterial communities in drinking-water source reservoirs remains poorly understood. In this study, nine major drinking-water source reservoirs in Longyan City, Fujian Province, China, were investigated. Water quality measurements, trophic state assessment, and 16S rRNA gene amplicon sequencing were combined to characterize plastisphere bacterial communities across oligotrophic and mesotrophic reservoirs. The comprehensive trophic level index classified four reservoirs as mesotrophic and five as oligotrophic. Bacterial alpha diversity indices showed no significant trophic-dependent pattern, whereas PERMANOVA revealed significant compositional divergence between trophic groups (p < 0.01). Electrical conductivity, pH, and dissolved oxygen were the strongest correlates of community variation. Mesotrophic reservoirs were enriched in Bacillota and Bacteroidota, with biomarkers mainly affiliated with Comamonadaceae, while oligotrophic reservoirs harbored more diverse biomarkers dominated by Pseudomonadota and Cyanobacteriota. Functional prediction indicated that only aliphatic non-methane hydrocarbon degradation differed significantly between trophic groups, whereas nitrogen-cycling functions showed no significant divergence. These findings demonstrate that trophic status acts as a significant environmental filter shaping plastisphere community structure in drinking-water source reservoirs, even within a narrow oligotrophic-to-mesotrophic gradient, providing new insights for ecological risk assessment of microplastics in source-water ecosystems. Full article

Hydrochar has emerged as a promising carbonaceous amendment to enhance soil quality, yet its short-term effects on soil carbon (C) and nitrogen (N) dynamics and microbial functioning remain poorly understood. Here, a 77-day greenhouse pot experiment was conducted using a Cambisol cultivated with sunflower (Helianthus annuus L.) under two irrigation regimes simulating well-irrigated (WI) and water-deficit (WD) scenarios. Two doses of chicken-manure-derived hydrochar (3.25 and 6.5 t ha⁻¹, corresponding to 2.35 and 4.69 g kg⁻¹ of dry soil, respectively) and mineral fertilizer (MF) treatments providing equivalent N inputs were evaluated. Hydrochar promoted microbial growth and enhanced enzymatic and respiratory activities despite its low apparent C and nutrient input. After 77 days under WI, the addition of 6.5 t ha⁻¹ hydrochar enhanced the activity of phenol oxidase (POA) and acid phosphomonesterase (AcPA). Concomitantly, the availability of soluble C and N increased, whereas total organic C (TOC) and N decreased relative to the initial values. These responses may suggest enhanced mineralization potentially related to early-stage priming processes. The increase in POA relative to β-glucosidase is in line with a functional shift from a predominant degradation of labile compounds towards an increased oxidation of more complex structures. This interpretation is supported by solid-state ¹³C NMR data, revealing a higher degradation index of the soil organic matter. Under WD, the overall effects of hydrochar were attenuated or suppressed, particularly those related to C and N dynamics, emphasizing the interactive influence of moisture and amendment dose. Overall, our results show that hydrochar can modulate short-term soil biochemical processes, partly through enhanced microbial responses. Full article

Wild relatives of cultivated legumes represent valuable genetic resources for crop improvement, ecosystem resilience, and sustainable agriculture. This study presents a comparative ecological and metagenomic assessment of three biogeographically distinct regions in Bulgaria—Kaliakra, Strandzha, and the Eastern Rhodopes—where populations of wild legumes, including Pisum elatius, Cicer montbrettii, Vicia incisa, and Lupinus spp., occur. Field expeditions were conducted during flowering and seed maturation stages, followed by rhizosphere soil sampling and high-throughput sequencing targeting bacterial 16S rRNA and fungal ITS regions. Soil physicochemical properties, microbial diversity indices, and taxonomic composition were analysed and compared among regions. Distinct microbial community structures were identified. Kaliakra soils were dominated by Firmicutes (26–58%) and Proteobacteria (20–25%), while Strandzha soils showed higher abundance of Actinobacteriota (12–68%) and Proteobacteria (10–35%). The Eastern Rhodopes exhibited more balanced communities, with Proteobacteria (30–45%), Firmicutes (7–43%), and Actinobacteriota (3–11%). Fungal communities also differed significantly, with Nectriaceae dominating in Kaliakra, higher evenness in Strandzha, and intermediate diversity in the Eastern Rhodopes. Alpha diversity revealed the highest bacterial richness in Kaliakra, whereas the Eastern Rhodopes showed the greatest community evenness. Beta diversity analysis demonstrated clear regional separation driven by environmental filtering. These findings highlight the ecological and microbiological differentiation of wild legume habitats and support their conservation and utilisation in sustainable agriculture and breeding programs. Full article

Fusobacterium nucleatum (Fn) has emerged as one of the most extensively studied tumor-associated opportunistic pathogens in colorectal cancer (CRC). The central question in Fn–CRC research has shifted from species-level detection or enrichment toward identifying specific lineages with enhanced persistence and tumor-promoting potential under defined host and ecological contexts. Accumulating evidence suggests substantial heterogeneity within Fn at the subspecies and clade levels. Among these, the F. nucleatum subsp. animalis C2 (Fna C2) lineage has been proposed as a candidate high-risk clade with potentially greater adaptability to the gastrointestinal tract and tumor microenvironment. However, current support for Fna C2 is derived mainly from ecological enrichment, comparative genomics, inferred metabolic features, and limited functional observations, while direct clinical and mechanistic validation at the clade level remains limited. Fn has been implicated in CRC progression through multiple interconnected processes, including adhesion and colonization, host signaling activation, inflammatory amplification, immune suppression, and metabolic adaptation. Notably, these pathogenic outputs are unlikely to be uniformly distributed across all Fn lineages, but instead appear to be shaped by the combined influence of bacterial lineage, host molecular context, microbial community structure, and spatial organization within the tumor microenvironment. In this review, we summarize the lineage heterogeneity of Fn, its association with CRC, and the underlying host–pathogen interaction mechanisms. We further discuss implications for high-resolution stratification, risk classification, and clinical translation, emphasizing the need to move from species-level associations toward lineage-resolved and context-aware frameworks. Full article

Driven by increasing demand in the health and wellness industry, Traditional Chinese Medicine (TCM) agriculture currently faces significant challenges related to supply–demand imbalances and continuous cropping obstacles (CCOs). Intercropping and crop rotation can mitigate yield decline and environmental stress by improving microclimates and rhizosphere ecology. However, there is still a lack of bibliometric synthesis within this research area. To analyze research hotspots and evolutionary trends, 192 articles on the intercropping and crop rotation of medicinal plants were collected from the Web of Science Core Collection (1998–2025), including databases such as the Science Citation Index Expanded (SCIE), the Social Science Citation Index (SSCI) and the Conference Proceedings Citation Index (CPCI). The results revealed a steady increase in publication volume over time. China emerged as the most prolific contributor (93 articles), while the United States occupied a pivotal position in the global collaborative network, achieving a high centrality of 0.90. Research hotspots in this field have evolved from an early emphasis on plant yield and quality toward the mechanisms for alleviating CCOs, interspecific interactions within the rhizosphere microbiome, and the ecological management of soil health. Keyword bursts indicate that “microbial community” and “carbon” have emerged as the current research frontiers. To clarify the micro-mechanisms by which intercropping and crop rotation patterns mitigate or prevent CCOs, future research should prioritize the integration of multi-omics approaches to resolve molecular interactions within the “microbe–plant–soil” nexus. Key priorities include the development of functional Synthetic Microbial Communities (SynComs) and the establishment of comprehensive evaluation systems for ecological cultivation. Furthermore, aligning these models with global climate neutrality strategies would facilitate the balance between high-quality medicinal production and ecosystem stability. Full article

Gastroesophageal reflux disease (GERD) is a common chronic disorder of the upper gastrointestinal tract, traditionally explained by an acid-centric model in which gastric acid causes mucosal injury and symptoms. Proton pump inhibitors (PPIs) are the mainstay of therapy and effectively control symptoms in many patients. However, up to 50% of individuals remain symptomatic despite adequate acid suppression, suggesting that GERD is a multifactorial condition involving anti-reflux barrier dysfunction, impaired mucosal defense, immune activation, and alterations in the esophageal microbiota. This study is a narrative review aimed at evaluating current evidence on the interactions between acid suppression, esophageal microbial ecology, and host–microbe interactions in GERD, and at exploring the potential role of microbiota-targeted therapeutic strategies. The literature search was conducted using electronic databases (e.g., PubMed and Scopus), without formal time restrictions, prioritizing recent and clinically relevant studies. Evidence was qualitatively synthesized to provide an integrated overview. Recent studies suggest that the esophagus hosts a microbial ecosystem that may contribute to mucosal homeostasis. In GERD and Barrett’s esophagus, several studies report a shift toward Gram-negative anaerobic bacteria with potential pro-inflammatory activity. Long-term PPI therapy has been associated with increased gastric pH and changes in gastrointestinal microbiota composition, including a relative increase in taxa such as Streptococcus and Veillonella, and a reduction in short-chain fatty acid–producing bacteria. These alterations may be linked to dysbiosis and a possible increase in susceptibility to certain infections, although causality remains to be fully established. The main limitations of this review include its narrative design, the absence of systematic study selection, and the heterogeneity of the available evidence. Understanding the impact of acid suppression on microbial ecology may support the development of more integrated and personalized therapeutic strategies. Full article

Monoculture plantations often face challenges of soil degradation and declining ecosystem services. Intercropping is beneficial to improving soil quality; however, the long-term effects of intercropping woody plants with medicinal herbs on soil ecosystems remain unclear. This study aimed to investigate the temporal effects of different durations of poplar intercropping with Aralia elata on soil physicochemical properties, enzyme activities, and soil microbial community structure. Soil samples were collected from the 0–20 cm soil layer, with composite samples obtained by mixing four soil cores per plot. We determined soil physicochemical properties, including pH, total carbon (TC), total nitrogen (TN), and total phosphorus (TP); soil enzyme activities, including invertase, urease, phosphatase, and β-N-acetylglucosaminidase (NAG); and soil microbial community structure using high-throughput sequencing of the bacterial 16S rRNA gene and fungal ITS region. Intercropping significantly affected soil chemical properties and enzyme activities in poplar plantations. Compared with the monoculture control (Y), TN (p < 0.01) and TC (p < 0.01) contents increased significantly in the 3- and 7-year intercropping treatments. The activity of β-N-acetylglucosaminidase (NAG) was enhanced following poplar–Aralia elata intercropping. In addition, intercropping significantly changed the composition and structure of soil microbial communities. In summary, introducing Aralia elata into poplar plantations can effectively improve soil fertility and reshape soil microbial community structure. This positive effect is time-dependent and becomes more significant with a 7-year intercropping duration. Poplar–Aralia elata intercropping represents a feasible management strategy to enhance ecological sustainability and soil health in plantation ecosystems of Northeast China. Full article

Under-forest cultivation of morels is increasingly constrained by soil ecological deterioration, which has become a major obstacle to its sustainable development. This study characterized hyphosphere soil microbiomes of Morchella sextelata M. Kuo under pine canopy at four distances from the fruiting body: 0 cm (R), 20 cm (R₂₀), 40 cm (R₄₀), and uncultivated control (CK). Bacterial and fungal community composition and diversity were analyzed using Illumina NovaSeq high-throughput sequencing. Results showed that the dominant bacterial phyla were Proteobacteria and Acidobacteriota, with RB41, Sphingomonas, and Dongia as the dominant genera. Relative to CK, the abundances of Acidobacteriota and RB41 in R increased by 4.45% and 6.16%, respectively, whereas R₂₀ was enriched in Proteobacteria (+7.77%), Sphingomonas (+0.95%), Dongia, and Bradyrhizobium. For fungi, Ascomycota and Basidiomycota were the dominant phyla, with the principal genera being Sebacina, Microbotryales_gen_Incertae_sedis, and Oidiodendron. Compared with CK, morel cultivation decreased the abundances of Ascomycota and Oidiodendron, with the greatest reductions in R₂₀ (by 8.73% and 3.67%, respectively), while increasing the abundances of Basidiomycota, Sebacina, and Microbotryales_gen_Incertae_sedis, again most markedly in R₂₀, by 17.56%, 14.82%, and 5.74%, respectively. Morel cultivation significantly reduced microbial diversity and evenness (Shannon, Simpson, and Pielou), with the lowest diversity and highest dominance in Zone R. Partial least squares structural equation modeling (PLS-SEM) revealed that soil chemical properties and enzyme activities negatively drove dominant bacterial genera but positively drove dominant fungal genera. Overall, under-forest cultivation of M. sextelata significantly reduced hyphosphere microbial diversity and reshaped microbial community structure in a distance-dependent manner: Zone R was dominated by Acidobacteriota; Zone R₂₀ was enriched with nitrogen-cycling beneficial bacteria (Dongia, Sphingomonas, and Bradyrhizobium) and beneficial fungi (Sebacina and Microbotryales_gen_Incertae_sedis); Zone R₄₀ exhibited relatively optimal fungal diversity. Full article

Background: Irrigation with swine wastewater may increase the dissemination risk of antibiotic resistance genes (ARGs) in the rhizosphere and alter root exudate composition. However, the relationship between root exudates and ARG dynamics under swine wastewater irrigation remains poorly understood. This study therefore aimed to clarify how root exudates are connected with ARG dynamics under swine wastewater irrigation. Methods: To address this, untargeted metabolomics and metagenomic sequencing were combined to characterize rhizosphere ARG composition, microbial community structure, and root exudate profiles in different soybean cultivars under swine wastewater irrigation. Results: The results showed that irrigation water source and soybean cultivar were associated with variation in soil ARG composition and changes in plant root metabolic profiles. Under wastewater irrigation, the relative abundances of secondary metabolites in root exudates were generally elevated, particularly those of organic nitrogen compounds and organic oxygenated compounds. Cultivar-related variation remained evident in rhizosphere microbial communities and ARG profiles, and differences in exudate composition among cultivars became smaller. Irrigation water source and soybean cultivar were associated with changes in ARG dynamics. This association was mainly linked to variation in rhizosphere microbial community structure rather than direct effects of root exudates on ARGs. Xanthine and 3-isobutylpentanedioic acid, identified as key root exudates, increased under wastewater irrigation and were related to variation in the potential ARG host genus SCGC-AG-212-J23 and the related ARGs. In contrast, 5-methylheptan-3-one decreased under wastewater irrigation and was correlated with variation in SCGC-AG-212-J23, Gp6-AA40, and the related ARGs. Conclusions: Swine wastewater irrigation and soybean cultivar altered root metabolism, which were linked to variation in rhizosphere microbial communities. These changes may have collectively contributed to shifts in rhizosphere ARGs. This could provide a basis for understanding the ecological relationships among root exudates, microorganisms, and ARGs under swine wastewater irrigation. Full article

The molecular mechanisms underlying freezing recovery in vertebrates, particularly in teleost fish, remain inadequately understood. This study utilized an integrated approach combining brain transcriptomics and gut microbiota analysis to investigate the recovery process in the freeze-tolerant species Perccottus glenii following experimental freezing and thawing. Significant transcriptomic reprogramming was observed in brain tissue, with the PPAR signaling pathway strongly activated immediately upon thawing (R0), potentially facilitating lipid metabolism and neuroprotection during ischemic stress. After 4 h of recovery (R4), circadian rhythm pathways were significantly upregulated, suggesting a potential role in coordinating metabolic recovery during reperfusion. Concurrently, gut microbiota analysis revealed substantial community shifts, characterized by a marked decrease in Bacillota and an increase in Pseudomonadota during the initial recovery phase. These findings suggest that successful freezing recovery in P. glenii is associated with coordinated changes in brain and gut, highlighting potential roles of metabolic adaptation and microbial ecological dynamics under the specific freezing protocol employed. Full article