Search Results (233)

Secondary metabolites produced by endophytic fungi living in medicinal plants are important resources in the field of biological control. In this study, Achaetomium sophora HY17, an endophytic fungus of Sophora alopecuroides, was taken as the research object and Botrytis cinerea HM1 as the target pathogen, and the response characteristics and antifungal mechanism of secondary metabolites produced during their interaction were explored through a co-culture system combined with metabonomic analysis. The key findings are as follows: (1) A. sophora HY17 produces many kinds of secondary metabolites, such as alkaloids, flavonoids, and phenolic acids, among which 10 different metabolites, such as Sophoridine, Matrine, and Luteolin, are significantly up-regulated during the interaction process and are the core antifungal active substances; (2) KEGG pathway enrichment analysis revealed that the phenylalanine metabolic pathway was significantly enriched during the interaction between the two fungi, and the activation of this pathway was the key regulatory mechanism underlying A. sophora HY17′s ability to cope with pathogen stress and synthesize antifungal metabolites. This study reports A. sophora HY17 as a new species, confirms its broad application prospects as a multifunctional and efficient biocontrol strain, and provides a core theoretical basis and target direction for mining antifungal substances from endophytic fungi to develop new biocontrol agents. Full article

This study aimed to investigate the effects of dietary guanidinoacetic acid (GAA) supplementation on yak physiology by evaluating growth performance, serum biochemical indices and plasm metabolomic profiles to elucidate the underlying regulatory mechanisms. Twenty-four male yaks (4–5 years; 249.38 ± 11.69 kg BW) were randomly allocated to three dietary treatments (n = 8): CON (basal diet), GAA1 (basal diet + 0.055% GAA), and GAA2 (basal diet + 0.11% GAA), with 55:45 of concentrate:roughage (DM basis). After a 10-day adaptation period, the feeding trial lasted 90 days. Body weights were measured on days 0 and 90 for growth performance evaluation, with blood samples collected on the final day for separation into serum and plasma to assess serum metabolic and antioxidant parameters and for plasma metabolomic profiling. The result showed that growth performance parameters displayed a positive trend, with average daily gain (ADG) showing marginal improvement (p = 0.072). Serum biochemical analysis revealed that dietary supplementation of GAA had no effect on serum biochemical parameters while tendency decreased GSH-Px activity (p = 0.087). Non-targeted metabolomics identified 39–121 differentially abundant metabolites in plasma across treatment groups. Kyoto encyclopedia of genes and genomes (KEGG) enrichment analysis of these metabolites revealed pathways such as tryptophan metabolism, glycerophospholipid metabolism, and arginine metabolism. Among the differentially abundant metabolites, N(omega)-Hydroxyarginine and tryptophan metabolites such as 5-hydroxytryptophan and serotonin were specifically highlighted. In conclusion, dietary supplementation of GAA in yaks has been confirmed to improve ADG, with a 0.11% supplementation level being more effective, and this may be associated with GAA enhancing amino acid metabolism, particularly arginine and tryptophan metabolism. Full article

Background: Dahuang Xiaoshi Tang (DXT), an ancient Chinese herbal remedy dating back to 220 AD, as documented initially in “Treatise on Febrile and Miscellaneous Diseases,” is used to treat damp-heat jaundice with interior sthenia syndrome. In DXT, anthraquinones and alkaloids form insoluble complexes, reducing its effectiveness. A revised herbal extract, DXT-M, was developed, and its hepatoprotective properties were demonstrated in animal models using pharmacodynamic, metabolomic, network pharmacological, and toxicological approaches. Methods: The α-naphthalene isothiocyanate was utilised to establish the acute liver injury rat model. The assays of glutamate pyruvate transaminase, glutamic oxalacetic transaminase, alkaline phosphatase, bilirubin, total bile acid, complement 3 (C3) and C4, interleukin-2 (IL-2) and IL-6, tumour necrosis factor α (TNF-α), and pathological morphology were used to evaluate the hepatoprotection of DXT in comparison to DXT-M. The ¹H-NMR-based serum and urine metabolomics were performed to identify potential biomarkers and metabolic pathways of DXT-M in treating hepatitis. The intrinsic regulatory mechanisms of DXT in liver protection, as well as the combination of network toxicology, were elucidated. Statistical analyses included RM two-way ANOVA with Geisser–Greenhouse correction and Dunnett’s post hoc test for longitudinal data, and one-way ANOVA with Dunnett’s post hoc test for group comparisons. Data were shown as mean ± SD. Results: Liver-injured animals exhibited weight loss, ruffled fur, and liver damage, accompanied by elevated liver function indicators. DXT-M effectively improved these symptoms, repaired liver damage, restored liver function, and regulated immune status by modulating complement 3. Metabonomics and other analyses indicated the CYP/GST-ROS axis is key to its hepatoprotective effects. DXT-M outperformed DXT in efficacy. Conclusions: DXT-M demonstrated significant effectiveness in restoring liver pathological damage, correcting abnormal biochemical indicators of liver function, and regulating complement factors. The pathway of CYP/GST-ROS served as the shared regulatory axis and transformation site for DXT-M’s liver protective effects. These findings suggest that DXT-M has potential as a treatment for acute liver injury, highlighting the need for further research into its underlying molecular mechanisms as well as its complete material basis. This study’s main limitation is its focus on acute models; future research should include other liver diseases and clinical observation to evaluate its full potential. Full article

Background: Dibutyl phthalate (DBP) is a prevalent environmental pollutant that can accumulate in organisms, becoming amplified after the food cycle and ultimately affecting human health. Recent studies have provided evidence suggesting a potential association between exposure to DBP and cardiovascular diseases (CVDs). Objectives: This study’s objective is to investigate the toxic cardiovascular effects of long-term exposure to DBP, particularly its impact on the heart and blood vessels. To be specific, we hypothesized and verified the potential mechanisms underlying DBP-induced cardiac and vascular injuries, focusing on oxidative stress, pyroptosis, inflammatory responses, and metabolic pathways. Methods: The rats were divided into 5 groups: Control group, DBP-Low group, DBP-Medium group, DBP-High group, and DBP-High + Vitamin E group. The entire experimental period lasted 12 weeks. We conducted examinations on echocardiography, histopathology, oxidative stress biomarkers, pyroptosis-related biomarkers, and inflammatory cytokine biomarkers. Additionally, we carried out serum metabolomics analysis. Result: Our research findings indicate that long-term exposure to DBP can cause significant toxic effects on the cardiovascular system. Specifically, DBP leads to changes in oxidative stress indicators (ROS and an increase in MDA levels, alongside a decrease in GSH levels) and protein levels related to pyroptosis (NLRP3, Caspase-1 and GSDMD levels increase) in cardiac and vascular tissues, triggering oxidative inflammatory responses (IL-1β and IL-18 levels increase), damaging the heart and blood vessels (organizational structure deformation and collagen fiber infiltration) and ultimately affecting their functions (abnormalities in cardiac function and hemodynamics). Additionally, the results of metabolomics studies suggest that metabolic pathways (Biotin metabolism, TCA cycle, Vitamin B6 metabolism, Pantothenate and CoA biosynthesis, and Riboflavin metabolism) and metabolites may also be of great significance. Conclusion: Long-term exposure to DBP can induce cardiovascular toxicity in rats, manifesting as cardiac and vascular damage, as well as alterations in organ function. This process is characterized by oxidative stress, activation of the pyroptosis pathway, inflammatory responses, and modifications to metabolic pathways. Full article

Conventional immediate and high-temperature immediate acid treatment are crucial techniques for breaking the diapause state of silkworm eggs, but their molecular mechanisms remain unclear. This study prepared diapause eggs (CK), conventional immediate acid-treated eggs (46 °C, 5 min, and CG), and high-temperature immediate acid-treated eggs (47.5 °C, 7 min, and GW) and analyzed the transcriptome and metabolome to screen for key expressed genes and key metabolites. Transcriptome results showed that 688, 823, and 222 differentially expressed genes (DEGs) were obtained from CK vs. CG, CK vs. GW, and CG vs. GW, respectively, and 12 DEGs significantly upregulated in all three comparisons (CK vs. CG, CK vs. GW, and CG vs. GW), including glycine-N-methyltransferase, choline dehydrogenase, Hsp68, and Hsp70. The LC-MS analysis results showed that 854, 711, and 506 differential metabolites (DMs) were obtained from CK vs. CG, CK vs. GW, and CG vs. GW, respectively. A total of seven DMs upregulated in all three comparisons and with |log₂Fold Change| ≥ 0.5 in CG vs. GW, including tyrosine-isoleucine-histidine, phenylalanyl-tyrosine, tyrosine-phenylalanine-glutamate-lysine, and histidylleucine, as well as 12 downregulated DMs, were identified. Additionally, it was found that γ-linolenic acid and triglycerides were upregulated in CG vs. GW. The conjoint analysis results revealed that four small peptides, including tyrosine-isoleucine-histidine, phenylalanyl-tyrosine, tyrosine-phenylalanine-glutamate-lysine, and histidylleucine, exhibited a highly significant positive correlation with Hsp70 family genes such as Hsp68 and Hsp70. This suggests that these small peptides, along with γ-linolenic acid and triglycerides, may play a crucial role in the resistance of silkworm eggs to high-temperature stress and the associated oxidative stress. Full article

Mesona chinensis Benth is a significant botanical resource utilized for both medicinal and dietary purposes, and the Xiaoye variety (XY) exhibited the highest antioxidant activity among the varieties. Despite its importance, metabolic information regarding its medicinal and nutritional properties remains sparse. This study examined the secondary metabolites of four M. chinensis Benth varieties using UHPLC-MS/MS and identified 102, 105, and 286 metabolites exhibiting differential accumulation in the XY variety compared to the Taiwan variety (TW), Minxuan variety (MX), and Zengcheng variety (ZC), respectively, among the 1287 metabolites identified. These metabolites are predominantly involved in secondary metabolic pathways such as “Tropane, Piperidine, and Pyridine Alkaloid Biosynthesis” and “Flavone and Flavonol Biosynthesis”. In addition, we identified the ten most significant differential metabolites that influence antioxidant activity, with flavonoids recognized as the primary contributors to the variation in antioxidant activities. In this study, we have outlined the metabolic landscape of M. chinensis Benth. These findings may aid in elucidating the mechanism behind the antioxidant activity of XY, which provides valuable insights for breeding, quality assurance, and product innovation related to M. chinensis Benth. Full article

Objective: The aim of this work is to investigate the impact of exercise on gut microbiome composition, serum metabolites, and their correlation with osteoarthritis (OA) severity. Methods: Thirty-six Sprague-Dawley (SD) rats were randomly divided into four groups: Sham rats without treadmill walking (Sham/Sed group, n = 9), Sham rats with treadmill walking 2 months (Sham/TW2M group, n = 9), PTOA rats without treadmill walking (PTOA/Sed group, n = 9), and PTOA rats with treadmill walking 2 months (PTOA/TW2M group, n = 9). The PTOA model was induced by transection of the anterior cruciate ligament (ACLT) and destabilization of the medial meniscus (DMM). Histological evaluation and micro-CT analysis were performed to observe the pathological changes in cartilage and subchondral bone, respectively. Additionally, we conducted 16S rDNA sequencing of fecal samples and untargeted metabolomic analysis using liquid chromatography–mass spectrometry (LC–MS) of serum samples to detect the alteration of gut microbiota composition and metabolites. Results: Exercise effectively mitigated OA-related pathological changes, including articular cartilage degeneration and subchondral bone loss. Moreover, 16S rDNA sequencing analysis of gut microbiome revealed a decreased abundance of Bacteroidetes (p < 0.01), Bacteroidia (p < 0.01), Rikenellaceae (p < 0.01), [Paraprevotellaceae] (p < 0.01), and Paraprevotella (p < 0.01) but an increase in Firmicutes (p < 0.01) in PTOA/TW2M group rats compared with PTOA/Sed group as a response to exercise. In addition, the results of metabolomics analysis showed that exercise treatment contributed to the upregulation of Daidzein and Anthranilic acid and downregulation of 1-Palmitoyllysophosphatidylcholine. Moreover, the correlation analysis showed that Rikenellaceae significantly positively correlated with both OARSI (r = 0.81, p < 0.01) and Mankin score (r = 0.83, p < 0.01) and negatively correlated with the serum level of Anthranilic acid (r = −0.56, p < 0.01) and Daidzein (r = −0.46, p < 0.01). Conclusions: Exercise can effectively mitigate OA through slowing down articular cartilage degeneration and subchondral bone loss, modulating gut microbiota composition, and increasing beneficial metabolites. Full article

Background/Objectives: Saussurea obvallata (DC.) Edgew., Asteraceae, is a traditional medicinal herbnative to the Qinghai–Tibet Plateau (QTP). Pharmacological investigationshave validated its pharmacological effects in anti-tumor, anti-inflammatory, heat-clearing, detoxifying, and analgesia. S. obv is presently facing habitat fragmentation and population decline. Therefore, we analyzed its genetic and chemical diversity to provide a scientific basis for the conservation and sustainable use of S. obv. Methods: Seven populations of S. obv were sampled from Xizang, China. The genetic diversity was analyzed using inter-simple sequence repeat (ISSR) markers, and metabolites were identified by ultra-high-performance liquid chromatography-tandem-quadrupole-time-of-flight mass spectrometry (UPLC-Q-TOF-MS/MS). Correlation analysis among genetic diversity, differential metabolites, and climatic factors were performed by R. Results: The genetic diversity among and within populations were both lowly and significantly correlated with geographical distance, showing a decreasing trend from east to west of the QTP. A total of 110 compounds were identified, including flavonoids, phenylpropanoids, lipids, fatty acids, terpenoids, alkaloids, etc. The metabolite contents among populations varied greatly and were related to environmental factors, mainly annual mean temperature and temperature fluctuation. The genetic diversity had little effect on the metabolic differences. Conclusions: These findings provided valuable baseline information for the conservation and pharmacological utilization of S. obv. Meanwhile, further research is necessary for the efficacy evaluation of anti-inflammatory, anti-tumor, radiation protection, and scar removal both in vitro and in vivo. Full article

This study investigated the hepatoprotective mechanisms of Volvariella volvacea fruiting body polypeptide (VVFP, 1–3 kDa) against acute alcohol-induced liver injury using multi-omics approaches. Male ICR mice pretreated with VVFP (100–400 mg/kg) showed significantly prolonged alcohol tolerance latency (p < 0.05) and accelerated sobriety recovery compared to controls. Integrated transcriptomics and metabolomics revealed VVFP’s dual regulatory effects: (1) transcriptional regulation of 36 endoplasmic reticulum stress genes (e.g., ERP57, Derl) through protein processing pathways (KEGG:04141), and (2) metabolic modulation of 23 hepatic metabolites, particularly phosphatidylcholines and organic acids, via amino acid biosynthesis and glycerophospholipid metabolism. Cross-omics analysis identified eight coregulated genes (Got1, Arg2, Srm, etc.) interacting with key metabolites (4-guanidinobutyric acid, GABA) through linoleic acid metabolism. These findings demonstrate VVFP’s therapeutic potential as a functional food ingredient by highlighting its ability to simultaneously target hepatic stress responses and metabolic homeostasis during alcohol detoxification. Full article

Bupleurum scorzonerifolium Willd. is a commonly used bulk Chinese herbal remedy. Due to the large-scale mining of wild Bupleurum scorzonerifolium Willd., its natural resources are gradually exhausted. In addition, there are some problems in Bupleurum scorzonerifolium Willd. cultivation, such as lack of guidance, excessive application of fertilizers and so on, which lead to the yield and quality of Bupleurum to be below the standard value. Therefore, it is significant to clarify the regulation of quality and yield under different levels of fertilizers. In this study, three different levels of potassium fertilizer were applied; then, the metabolites in different parts of Bupleurum were analyzed by gas chromatography–mass spectrometry (GC–MS) to detect the alterations in the metabolic spectrum and recognize both the accumulation and distribution of key metabolites in response to each level of potassium fertilizer. The contents of various mineral elements, such as sodium, calcium, potassium, magnesium, manganese, zinc, iron, and copper, in different parts of Bupleurum under different potassium levels were determined. Potassium fertilizer had a significant impact on the absorption and distribution of these mineral elements. There were synergistic and antagonistic effects between each element and K⁺. The results showed that low and high potassium levels could promote the progression of main shoots and roots, but inhibited the accumulation of dry matter in lateral shoots and flowers. Low potassium levels stimulated the content of saikosaponin a in all plant parts, while high potassium levels inhibited the accumulation of most saikosaponin a,c and d. A total of 77 metabolites were identified by GC–MS, of which glycerol, d-glucose, silane and copper phthalocyanine were highlighted as the key metabolites in response to potassium fertilizer. The abovementioned metabolites are mapped into insulin signaling pathways, streptomycin biosynthesis, galactose metabolism and other metabolic pathways, sustaining the metabolic regulation of Bupleurum scorzonerifolium Willd. Full article

Exercise is one of the main challenges to the body’s homeostasis since it needs an immediate, substantial rise in ATP re-synthesis, which leads to the prevention of response capacity and performance of players. Therefore, it is vital to monitor sweat metabolites in soccer players during vigorous exercise to comprehend their functional variations. This flagged the requirement metabonomic approaches for the determination of the distinct metabolic pathways and signature metabolites that are involved in soccer players pre- and post-exercise. In this study, metabolomics and chemometrics approaches were integrated to accelerate and unravel signature-altered metabolites involved pre- and post-exercise. Metabolites profiling revealed a total of 57 signatures and the identified signature altered metabolites belonging to carboxylic acids, ketone, alcohols, aldehydes, aromatics, alkenes, hexoses, hydroxy fatty acids, tetracyclic N-heterocycles, aldopentose, benzenes, alkanes, phenols, and heterocyclic. Niacin is the most downregulated and abundant pre-induced exercise, which can employ its effects through energy metabolism as a precursor for nicotinamide adenine dinucleotide (NAD) and nicotinamide adenine dinucleotide phosphate (NADP). Significant alterations were also specifically observed in the Alanine, aspartate and glutamate, Valine, leucine and isoleucine, Pantothenate and CoA biosynthesis, and Galactose metabolisms following exercise. Full article

(1) Background: At the time of harvest, the stems of broccoli are frequently discarded. (2) Methods: In this study, the sulforaphane content and glucosinolate profile of broccoli stems were analyzed at different temperature treatments. (3) Results: Thermal treatment of broccoli stems for 1 h resulted in maximal sulforaphane content at 50 °C, with a subsequent progressive reduction in concentration correlating to elevated temperatures. Metabolomic analysis was conducted on broccoli stem samples subjected to 25 °C (CK), 50 °C, and 80 °C treatments. Among the 25 identified GSLs, the 50 °C-treated samples demonstrated significantly reduced GSL accumulation, whereas the 80 °C group exhibited maximal GSL retention. Indole derivatives predominated among the three GSL subclasses (aliphatic, aromatic, and indole), accounting for approximately 70% of total GSLs across all groups. The observed GSL depletion at 50 °C correlated with enhanced sulforaphane biosynthesis. Comparative analysis further indicated that 80 °C treatment induced a more pronounced elevation of indole GSLs compared to aliphatic and aromatic counterparts in broccoli stems. (4) Conclusions: The results demonstrated that indole GSLs in broccoli stems exhibit superior thermal stability. Moderate thermal treatments effectively enhance sulforaphane content, whereas exposure to 80 °C significantly increases total GSL content. Full article

Coral reefs thrive in nutrients-poor waters, and their survival strategy in such oligotrophic marine environments remains largely unexplored. Current coral research has focused on the interplay between the animal hosts, symbiotic Symbiodiniaceae, and associated bacteria, with little attention given to their individual interactions. Here, we integrated biochemical, transcriptomic, and metabonomic analyses of the clade D Symbiodiniaceae strain AG11 to investigate the growth-assisting mechanisms of symbiotic bacteria. Our findings indicate that metabolic trophallaxis between Symbiodiniaceae and symbiotic bacteria plays a crucial role in enhancing survival and population growth under nitrogen-depleted conditions, commonly found in typical coral habitats. Notably, the exchange of organic compounds between Symbiodiniaceae and bacteria significantly boosts nitrogen uptake in their free-living state. Furthermore, we demonstrated how beneficial bacteria influence the survival of Symbiodiniaceae in response to environmental changes, which are vital for coping with nitrogen-depleted conditions where coral reefs are particularly vulnerable. Full article

P. multocida is notorious for inducing excessive inflammation with high lethality in multiple animals, such as cattle, pigs, and chickens. Our previous study revealed that L-serine was decreased in the lungs of mice infected with P. multocida capsular type A strain CQ2 (PmCQ2), and 2 mg/kg of L-serine could alleviate PmCQ2-induced lung inflammation in vivo, which may largely depend on macrophages. However, the underlying intrinsic alterations remain unknown. Here, we demonstrated that 10 mM of L-serine significantly inhibited the release of inflammatory cytokines (e.g., IL-1β and TNF-α) by blocking inflammasome activation (including NALP1, NLRP3, NLRC4, AIM2, and Caspase-1) in PmCQ2-infected macrophages. Furthermore, the results of RNA-seq and metabonomics revealed that exogenous L-serine supplementation substantially reprogrammed macrophage transcription and metabolism. Mechanically, L-serine reduced inflammatory responses via the inhibition of glycolysis in macrophages based on a seahorse assay. Together, these findings characterize the intrinsic molecular alterations in activated macrophages and provide new targets for modulating P. multocida infection-induced macrophage inflammation. Full article