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24 pages, 4701 KiB  
Article
Evidence of Graft Incompatibility and Rootstock Scion Interactions in Cacao
by Ashley E. DuVal, Alexandra Tempeleu, Jennifer E. Schmidt, Alina Puig, Benjamin J. Knollenberg, José X. Chaparro, Micah E. Stevens and Juan Carlos Motamayor
Horticulturae 2025, 11(8), 899; https://doi.org/10.3390/horticulturae11080899 (registering DOI) - 3 Aug 2025
Viewed by 215
Abstract
This study sought to quantify and characterize diverse rootstock scion interactions in cacao around graft compatibility, disease resistance, nutrient use efficiency, vigor traits, and translocation of nonstructural carbohydrates. In total, 106 grafts were performed with three scion cultivars (Matina 1/6, Criollo 22, Pound [...] Read more.
This study sought to quantify and characterize diverse rootstock scion interactions in cacao around graft compatibility, disease resistance, nutrient use efficiency, vigor traits, and translocation of nonstructural carbohydrates. In total, 106 grafts were performed with three scion cultivars (Matina 1/6, Criollo 22, Pound 7) and nine diverse open-pollinated seedling populations (BYNC, EQX 3348, GNV 360, IMC 14, PA 107, SCA 6, T 294, T 384, T 484). We found evidence for both local and translocated graft incompatibility. Cross sections and Micro-XCT imaging revealed anatomical anomalies, including necrosis and cavitation at the junction and accumulation of starch in the rootstock directly below the graft junction. Scion genetics were a significant factor in explaining differences in graft take, and graft take varied from 47% (Criollo 22) to 72% (Pound 7). Rootstock and scion identity both accounted for differences in survival over the course of the 30-month greenhouse study, with a low of 28.5% survival of Criollo 22 scions and a high of 72% for Pound 7 scions. Survival by rootstocks varied from 14.3% on GNV 360 to 100% survival on T 294 rootstock. A positive correlation of 0.34 (p = 0.098) was found between the graft success of different rootstock–scion combinations and their kinship coefficient, suggesting that relatedness of stock and scion could be a driver of incompatibility. Significant rootstock–scion effects were also observed for nutrient use efficiency, plant vigor, and resistance to Phytophthora palmivora. These findings, while preliminary in nature, highlight the potential of rootstock breeding to improve plant nutrition, resilience, and disease resistance in cacao. Full article
(This article belongs to the Special Issue Advances in Tree Crop Cultivation and Fruit Quality Assessment)
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26 pages, 3811 KiB  
Article
Development and Validation of Multi-Locus GWAS-Based KASP Markers for Maize Ustilago maydis Resistance
by Tao Shen, Huawei Gao, Chao Wang, Yunxiao Zheng, Weibin Song, Peng Hou, Liying Zhu, Yongfeng Zhao, Wei Song and Jinjie Guo
Plants 2025, 14(15), 2315; https://doi.org/10.3390/plants14152315 - 26 Jul 2025
Viewed by 381
Abstract
Corn smut, caused by Ustilago maydis, significantly threatens maize production. This study evaluated 199 maize inbred lines at the seedling stage under greenhouse conditions for resistance to U. maydis, identifying 39 highly resistant lines. A genome-wide association study (GWAS) using the [...] Read more.
Corn smut, caused by Ustilago maydis, significantly threatens maize production. This study evaluated 199 maize inbred lines at the seedling stage under greenhouse conditions for resistance to U. maydis, identifying 39 highly resistant lines. A genome-wide association study (GWAS) using the mrMLM model detected 19 significant single-nucleotide polymorphism (SNP) loci. Based on a linkage disequilibrium (LD) decay distance of 260 kb, 226 candidate genes were identified. Utilizing the significant loci chr1_244281660 and chr5_220156746, two kompetitive allele-specific PCR (KASP) markers were successfully developed. A PCR-based sequence-specific oligonucleotide probe hybridization technique applied to the 199 experimental lines and 60 validation lines confirmed polymorphism for both markers, with selection efficiencies of 48.12% and 43.33%, respectively. The tested materials were derived from foundational inbred lines of domestic and foreign origin. Analysis of 39 highly resistant lines showed that the advantageous alleles carrying thymine/cytosine (T/C) predominated at frequencies of 94.87% and 53.84%, respectively. The genotype TTCC conferred high resistance, while CCTT was highly susceptible. The resistance exhibited high heritability and significant gene-by-environment interaction. This work systematically dissects the genetic basis of common smut resistance in maize, identifies favorable alleles, and provides a novel KASP marker-based strategy for developing disease-resistant germplasm. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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14 pages, 1157 KiB  
Article
Phenolic Exudation Control and Indirect Somatic Embryogenesis of Garlic-Fruit Tree (Malania oleifera Chun & S.K. Lee)—An Endangered Woody Tree Species of Southeastern Yunnan Province, China
by Rengasamy Anbazhakan, Xin-Meng Zhu, Neng-Qi Li, Brihaspati Poudel and Jiang-Yun Gao
Plants 2025, 14(14), 2186; https://doi.org/10.3390/plants14142186 - 15 Jul 2025
Viewed by 322
Abstract
Malania oleifera Chun & S.K. Lee, an endemic monotypic species that belongs to the family Olacaceae, is under continuous pressure of decline owing to several ecological and physiological factors. The present study aimed to establish an efficient in vitro protocol for callus-mediated indirect [...] Read more.
Malania oleifera Chun & S.K. Lee, an endemic monotypic species that belongs to the family Olacaceae, is under continuous pressure of decline owing to several ecological and physiological factors. The present study aimed to establish an efficient in vitro protocol for callus-mediated indirect somatic embryogenesis in M. oleifera by alleviating tissue browning. Internodes and leaves obtained from seedlings were used as explants. Antioxidant pre-treatment (ascorbic acid, AA) followed by different carbon sources (sucrose, maltose, glucose, and fructose) and plant growth regulators in various concentrations and combinations were employed in Woody Plant Medium (WPM) to alleviate explant browning and induce callus formation from the explants. AA pre-treatment and subsequent culture on maltose at a concentration of 116.8 mM were optimal for controlling phenolic exudation on >90% of both explants. The highest responses of 53.77% and 57.43% for embryogenic calli were induced from internode and leaf explants, respectively. The highest responses, 85.22% and 93.80%, were observed for somatic embryos that matured into the globular, heart-shaped and torpedo stages at different percentages on NAA 2.5 mg/L in combination with BA 1.0 mg/L for both explants. The matured somatic embryos were finally germinated at a maximum concentration of GA3, 2.0 mg/L. All plantlets were successfully hardened and acclimatized under culture room conditions and then transferred to the greenhouse. The current study suggests an efficient protocol for indirect somatic embryogenesis by alleviating phenolic exudation from the explants of M. oleifera. This first successful report of in vitro culture establishment in M. oleifera may offer an effective alternative measure to conserve this species and provide a system for analyzing bioactive chemicals and for use in the oil industry. Full article
(This article belongs to the Section Phytochemistry)
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16 pages, 7110 KiB  
Article
Differential Effects of Arbuscular Mycorrhizal Fungi on Rooting and Physiology of ‘Summer Black’ Grape Cuttings
by Yi-Yuan Peng, Chun-Yan Liu and Yong Hao
Horticulturae 2025, 11(7), 825; https://doi.org/10.3390/horticulturae11070825 - 10 Jul 2025
Viewed by 358
Abstract
Arbuscular mycorrhizal fungi (AMF) symbiosis has great potential in improving grapevine performance and reducing external input dependency in viticulture. However, the precise, strain-specific impacts of different AMF species on ‘Summer Black’ grapevine cuttings across multiple physiological and morphological dimensions remain underexplored. To address [...] Read more.
Arbuscular mycorrhizal fungi (AMF) symbiosis has great potential in improving grapevine performance and reducing external input dependency in viticulture. However, the precise, strain-specific impacts of different AMF species on ‘Summer Black’ grapevine cuttings across multiple physiological and morphological dimensions remain underexplored. To address this, we conducted a controlled greenhouse pot experiment, systematically evaluating four different AMF species (Diversispora versiformis, Diversispora spurca, Funneliformis mosseae, and Paraglomus occultum) on ‘Summer Black’ grapevine cuttings. All AMF treatments successfully established root colonization, with F. mosseae achieving the highest infection rate. In detail, F. mosseae notably enhanced total root length, root surface area, and volume, while D. versiformis specifically improved primary adventitious and 2nd-order lateral root numbers. Phosphorus (P) uptake in both leaves and roots was significantly elevated across all AMF treatments, with F. mosseae leading to a 42% increase in leaf P content. Furthermore, AMF inoculation generally enhanced the activities of catalase, superoxide dismutase, and peroxidase, along with soluble protein and soluble sugar contents in leaves and roots. Photosynthetic parameters, including net photosynthetic rate (Pn), stomatal conductance (Gs), and transpiration rate (Tr), were dramatically increased in AMF-colonized cutting seedlings. Whereas, P. occultum exhibited inhibitory effects on several growth metrics, such as shoot length, leaf and root biomass, and adventitious lateral root numbers, and decreased the contents of Nitrogen (N), potassium (K), magnesium (Mg), and iron (Fe) in both leaves and roots. These findings conclusively demonstrate that AMF symbiosis optimizes root morphology, enhances nutrient acquisition, and boosts photosynthetic efficiency and stress resilience, thus providing valuable insights for developing targeted bio-fertilization strategies in sustainable viticulture. Full article
(This article belongs to the Section Viticulture)
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25 pages, 8005 KiB  
Article
Field Evaluation of a Transplanter and a Collector Under Development for Korean Spring Cabbage Production in Greenhouses
by Md Nasim Reza, Md Rejaul Karim, Md Razob Ali, Kyu-Ho Lee, Emmanuel Bicamumakuba, Ka Young Lee and Sun-Ok Chung
AgriEngineering 2025, 7(7), 226; https://doi.org/10.3390/agriengineering7070226 - 9 Jul 2025
Viewed by 387
Abstract
Cabbage (Brassica rapa L. ssp. Pekinensis) is an important vegetable crop in the Republic of Korea, due to its essential role in kimchi production. However, labor shortages and an aging population necessitate mechanization to sustain productivity. This study aimed to evaluate the [...] Read more.
Cabbage (Brassica rapa L. ssp. Pekinensis) is an important vegetable crop in the Republic of Korea, due to its essential role in kimchi production. However, labor shortages and an aging population necessitate mechanization to sustain productivity. This study aimed to evaluate the field performance of a cabbage transplanter under development with a commercial transplanter and a cabbage collector under greenhouse conditions. This study evaluated transplanting efficiency, planting performance, and yield of cabbage using seedlings at three distinct age groups (30, 35, and 43 days). A cabbage transplanter (Transplanter A) under development, a commercial model (Transplanter B), and manual transplanting were used for comparative analysis. At harvest, a tractor-mounted cabbage collector was used to collect and pack all the cabbages. Transplanter A demonstrated a forward speed of 1.27 km/h and an average planting rate of 2365 seedlings/h, significantly higher than manual transplanting (513 seedlings/h). The effective field capacity (EFC) ranged from 0.11 to 0.13 ha/h, compared to 0.019–0.028 ha/h for manual planting. While Transplanter A showed a higher missing transplant rate (18.17%) than Transplanter B (7.67%), it maintained consistently lower bad planting rates (2.5–4.5%) compared to Transplanter B (3.3–8.8%). In addition, it produced significantly higher cabbage weights (6070 g/plant) and better root metrics than manual transplanting. The cabbage collector achieved 100% efficiency with no crop damage or contamination. The transplanter under development proved effective for greenhouse use, offering faster operation, better planting accuracy, and higher yields, supporting broader mechanization in Korean agriculture. Full article
(This article belongs to the Collection Research Progress of Agricultural Machinery Testing)
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17 pages, 5753 KiB  
Protocol
Protoplast-Based Regeneration Enables CRISPR/Cas9 Application in Two Temperate Japonica Rice Cultivars
by Marion Barrera, Blanca Olmedo, Matías Narváez, Felipe Moenne-Locoz, Anett Rubio, Catalina Pérez, Karla Cordero-Lara and Humberto Prieto
Plants 2025, 14(13), 2059; https://doi.org/10.3390/plants14132059 - 5 Jul 2025
Viewed by 627
Abstract
Rice (Oryza sativa L.), a staple food for over half of the global population, plays a pivotal role in food security. Among its two primary groups, japonica and indica, temperate japonica varieties are particularly valued for their high-quality grain and culinary [...] Read more.
Rice (Oryza sativa L.), a staple food for over half of the global population, plays a pivotal role in food security. Among its two primary groups, japonica and indica, temperate japonica varieties are particularly valued for their high-quality grain and culinary uses. Although some of these varieties are adapted to cooler climates, they often suffer from reduced productivity or increased disease susceptibility when cultivated in warmer productive environments. These limitations underscore the need for breeding programs to incorporate biotechnological tools that can enhance the adaptability and resilience of the plants. However, New Genomic Techniques (NGTs), including CRISPR-Cas9, require robust in vitro systems, which are still underdeveloped for temperate japonica genotypes. In this study, we developed a reproducible and adaptable protocol for protoplast isolation and regeneration from the temperate japonica cultivars ‘Ónix’ and ‘Platino’ using somatic embryos as the starting tissue. Protoplasts were isolated via enzymatic digestion (1.5% Cellulase Onozuka R-10 and 0.75% Macerozyme R-10) in 0.6 M AA medium over 18–20 h at 28 °C. Regeneration was achieved through encapsulation in alginate beads and coculture with feeder extracts in 2N6 medium, leading to embryogenic callus formation within 35 days. Seedlings were regenerated in N6R and N6F media and acclimatized under greenhouse conditions within three months. The isolated protoplast quality displayed viability rates of 70–99% within 48 h and supported transient PEG-mediated transfection with GFP. Additionally, the transient expression of a gene editing CRISPR-Cas9 construct targeting the DROUGHT AND SALT TOLERANCE (OsDST) gene confirmed genome editing capability. This protocol offers a scalable and genotype-adaptable system for protoplast-based regeneration and gene editing in temperate japonica rice, supporting the application of NGTs in the breeding of cold-adapted cultivars. Full article
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17 pages, 4351 KiB  
Article
Soybean Fermentation Broth Value-Added Phosphorus Fertilizer Boosts Crop Growth via Improved Soil Phosphorus Availability and Rhizosphere Microbial Activity
by Xinyi Zhang, Danyi He, Wuzhihui Huang, Tingyi Wang and Lansheng Deng
Agriculture 2025, 15(13), 1440; https://doi.org/10.3390/agriculture15131440 - 4 Jul 2025
Viewed by 323
Abstract
Excessive application of phosphate fertilizers exacerbates water pollution, while the low phosphorus availability in acidic soils results in diminished phosphorus utilization efficiency of crops. This study conducted a maize pot experiment to investigate the effects of soybean fermentation broth value-added phosphorus fertilizer (SFB-VAPF) [...] Read more.
Excessive application of phosphate fertilizers exacerbates water pollution, while the low phosphorus availability in acidic soils results in diminished phosphorus utilization efficiency of crops. This study conducted a maize pot experiment to investigate the effects of soybean fermentation broth value-added phosphorus fertilizer (SFB-VAPF) on soil phosphorus availability and microbial communities in acidic lateritic red soils during the 31-day seedling stage to determine its growth promotion efficacy. Conducted in Guangzhou, China, under greenhouse conditions, the experimental design comprised 11 treatments: CK (no fertilizer), treatments with P alone at two levels (0.05 and 0.15 g·kg−1), and eight SFB-VAPF treatments combining each P level with four dilutions of soybean fermentation broth (SFB; 100-, 300-, 500-, and 700-fold dilutions). Each treatment had five replications. Application of SFB-VAPF significantly improved the soil chemical attributes, enzyme activities, and promoted maize growth and nutrient accumulation. Compared to the high-P treatments (0.15 g·kg−1 P), low-P SFB-VAPF demonstrated superior enhancement of the soil organic matter (SOM), available nutrients, maize biomass, and nutrient accumulation. The treatment combining 0.05 g·kg−1 P and 100-fold diluted SFB significantly increased the acid phosphatase activity (ACP) by 28.01% and the AP content by 69.63%, while achieving the highest maize biomass. Although SFB-VAPF application reduced the microbial species richness, the combinations of low P with high SFB and high P with low SFB enhanced both the community structural diversity and distribution evenness. SFB-VAPF application reduced the abundance of Alphaproteobacteria, while the Gammaproteobacteria abundance significantly increased in the low-P SFB-VAPF groups. The microbial beta diversity analysis demonstrated that combining 0.05 g·kg−1 P with SFB significantly altered the microbial community structure. The key driving factors included soil EC and SOM, AP, Al-P, and Fe-P contents, with AP content exerting an extremely significant influence on the bacterial community composition and structure (p ≤ 0.001). This study demonstrates that SFB-VAPF enhances soil phosphorus availability, and improves the structural diversity and distribution evenness of microbial communities, thereby promoting crop growth. Critically, SFB synergistically enhances the efficiency of low-concentration phosphorus fertilizers. Full article
(This article belongs to the Section Agricultural Soils)
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14 pages, 2206 KiB  
Article
Neodymium Exerts Biostimulant and Synergistic Effects on the Nutrition and Biofortification of Lettuce with Zinc
by Imelda Rueda-López, Fernando C. Gómez-Merino, María G. Peralta Sánchez and Libia I. Trejo-Téllez
Horticulturae 2025, 11(7), 776; https://doi.org/10.3390/horticulturae11070776 - 2 Jul 2025
Viewed by 350
Abstract
This research aimed to evaluate the effects of different concentrations of neodymium (Nd: 0, 2.885, 5.770, and 8.655 mg L−1, referred to as Nd0, Nd1, Nd2, and Nd3, respectively) and zinc (Zn: 0.1, 0.2, and 0.3 mg L−1, designated [...] Read more.
This research aimed to evaluate the effects of different concentrations of neodymium (Nd: 0, 2.885, 5.770, and 8.655 mg L−1, referred to as Nd0, Nd1, Nd2, and Nd3, respectively) and zinc (Zn: 0.1, 0.2, and 0.3 mg L−1, designated as Zn1, Zn2, and Zn3, respectively), as well as their combined interaction, on the nutritional content of lettuce (Lactuca sativa) cv. Ruby Sky. The seedlings were grown in a floating hydroponic system under greenhouse conditions. After 48 days of treatment, leaf samples were collected to determine their nutrient content. Leaf contents of N, P, Ca, Mg, S, Fe, Mn, B, and Nd were higher with the Nd1 (2.885 mg Nd L−1 + Zn1 (0.1 mg Zn L−1) treatment. The Nd3 (8.655 mg Nd L−1) + Zn3 (0.3 mg Zn L−1) treatment significantly increased the leaf contents of Cu and Zn. The K content was higher in leaves treated with Nd2 (5.770 mg Nd L−1) + Zn3 (0.3 mg Zn L−1). The joint application of Nd and Zn had positive effects on the nutrition of hydroponic lettuce, and Nd promoted the biofortification of lettuce by increasing leaf Zn content. Full article
(This article belongs to the Special Issue Effects of Biostimulants on Horticultural Crop Production)
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14 pages, 2762 KiB  
Article
Highly Efficient Regeneration of Bombax ceiba via De Novo Organogenesis from Hypocotyl and Bud Explants
by Yamei Li, Qionghai Jiang, Lisha Cha, Fei Lin, Fenling Tang, Yong Kang, Guangsui Yang, Surong Huang, Yuhua Guo and Junmei Yin
Plants 2025, 14(13), 2033; https://doi.org/10.3390/plants14132033 - 2 Jul 2025
Viewed by 322
Abstract
Bombax ceiba is an important medicinal and ornamental tree widely distributed in tropical and subtropical areas. However, its seeds lose viability rapidly after harvest, which has created hurdles in large-scale propagation. Here, we describe the development of a rapid and efficient de novo [...] Read more.
Bombax ceiba is an important medicinal and ornamental tree widely distributed in tropical and subtropical areas. However, its seeds lose viability rapidly after harvest, which has created hurdles in large-scale propagation. Here, we describe the development of a rapid and efficient de novo organogenesis system for Bombax ceiba, incorporating both indirect and direct regeneration pathways. The optimal basal medium used throughout the protocol was ½ MS supplemented with 30 g/L glucose, with all cultures maintained at 26–28 °C. For the indirect pathway, callus was induced from both ends of each hypocotyl on basal medium supplemented with 0.2 mg·L−1 2,4-dichlorophenoxyacetic acid (2,4-D) and 0.5 mg·L−1 6-Benzylaminopurine (6-BA) under dark conditions. The induced calluses were subsequently differentiated into adventitious shoots on basal media containing 0.5 mg·L−1 Indole-3-butyric acid (IBA), 0.15 mg·L−1 Kinetin (KIN), and 1 mg·L−1 6-BA under a 16 h photoperiod, resulting in a callus induction rate of 140% and a differentiation rate of 51%. For the direct regeneration pathway, shoot buds cultured on medium with 0.5 mg·L−1 IBA and 1 mg·L−1 6-BA achieved a 100% sprouting rate with a regeneration coefficient of approximately 3.2. The regenerated adventitious shoots rooted successfully on medium supplemented with 0.5 mg·L−1 Naphthylacetic acid (NAA) and were acclimatized under greenhouse conditions to produce viable plantlets. This regeneration system efficiently utilizes sterile seedling explants, is not limited by seasonal or environmental factors, and significantly improves the propagation efficiency of Bombax ceiba. These optimized micropropagation methods also provide a robust platform for future genetic transformation studies using hypocotyls and shoot buds as explants. Full article
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20 pages, 2010 KiB  
Article
Machine Learning Analysis of Maize Seedling Traits Under Drought Stress
by Lei Zhang, Fulai Zhang, Wentao Du, Mengting Hu, Ying Hao, Shuqi Ding, Huijuan Tian and Dan Zhang
Biology 2025, 14(7), 787; https://doi.org/10.3390/biology14070787 - 29 Jun 2025
Viewed by 419
Abstract
The increasing concentration of greenhouse gases is amplifying the global risk of drought on crop productivity. This study sought to investigate the effects of drought on the growth of maize (Zea mays L.) seedlings. A total of 78 maize hybrids were employed [...] Read more.
The increasing concentration of greenhouse gases is amplifying the global risk of drought on crop productivity. This study sought to investigate the effects of drought on the growth of maize (Zea mays L.) seedlings. A total of 78 maize hybrids were employed in this study to replicate drought conditions through the potting method. The maize seedlings were subjected to a 10-day period of water breakage following a standard watering cycle until they reached the third leaf collar (V3) stage. Parameters including plant height, stem diameter, chlorophyll content, and root number were assessed. The eight phenotypic traits include the fresh and dry weights of both the aboveground and underground parts. Three machine learning methods—random forest (RF), K-nearest neighbor (KNN), and extreme gradient boosting (XGBoost)—were employed to systematically analyze the relevant traits of maize seedlings’ drought tolerance and to assess their predictive performance in this regard. The findings indicated that plant height, aboveground weight, and chlorophyll content constituted the primary indices for phenotyping maize seedlings under drought conditions. The XGBoost model demonstrated optimal performance in the classification (AUC = 0.993) and regression (R2 = 0.863) tasks, establishing itself as the most effective prediction model. This study provides a foundation for the feasibility and reliability of screening drought-tolerant maize varieties and refining precision breeding strategies. Full article
(This article belongs to the Special Issue Plant Breeding: From Biology to Biotechnology)
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16 pages, 1751 KiB  
Article
Enhancement of Tomato Growth Through Rhizobacteria and Biocontrol of Associated Diseases
by Hasna El hjouji, Redouan Qessaoui, Salahddine Chafiki, El Hassan Mayad, Hafsa Houmairi, Khadija Dari, Bouchaib Bencharki and Hinde Aassila
Life 2025, 15(7), 997; https://doi.org/10.3390/life15070997 - 23 Jun 2025
Viewed by 554
Abstract
The purpose of this study was to investigate the growth-promoting effects of four rhizobacterial isolates (RS60, RS65, RS46, and RP6) isolated from the tomato rhizosphere. These isolates were screened for key plant growth-promoting rhizobacteria (PGPR) mechanisms, including ammonia production, nitrogen fixation, phosphate solubilization, [...] Read more.
The purpose of this study was to investigate the growth-promoting effects of four rhizobacterial isolates (RS60, RS65, RS46, and RP6) isolated from the tomato rhizosphere. These isolates were screened for key plant growth-promoting rhizobacteria (PGPR) mechanisms, including ammonia production, nitrogen fixation, phosphate solubilization, indole-3-acetic acid (IAA) production, and siderophore synthesis. Their potential to enhance seed germination and tomato plant growth was investigated in controlled and greenhouse conditions. Four isolates exhibited multiple PGPR attributes, notably IAA and ammonia production as well as phosphate solubilization. The results revealed that these strains significantly enhanced tomato seed germination and shoot growth in vitro, with RS65 showing the highest germination rate (70%). However, no significant differences in early seedling responses were observed under greenhouse conditions when compared to the control. Thirty days after inoculation, greenhouse results revealed that the four studied strains significantly increased growth metrics including shoot length, number of leaves, collar diameter, and dry weight. The isolate RP6 showed a significant effect on the growth of the plant, with an average shoot length of 34.40 cm and nine leaves per plant. In vitro antagonism assays demonstrated that isolates RS60, RS65, and RP6 effectively inhibited the growth of Botrytis cinerea, Alternaria alternata, and Oidium lycopersici, with inhibition rates exceeding 65%. These antagonistic activities were linked to the production of hydrolytic enzymes (chitinase, cellulase, pectinase, protease), siderophores, and hydrogen cyanide (HCN). Molecular identification through 16S rRNA gene sequencing confirmed the isolates as Bacillus cereus (RS60), Bacillus pumilus (RS46), Bacillus amyloliquefaciens (RP6), and Bacillus velezensis (RS65), each showing over 97% sequence similarity with reference strains. These findings underscore the potential of the selected Bacillus spp. as promising biofertilizers and biocontrol agents for sustainable tomato cultivation and support their inclusion in integrated disease and nutrient management strategies. Full article
(This article belongs to the Special Issue Plant–Soil Interactions Under Global Change)
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18 pages, 2320 KiB  
Article
Compaction of Iron Mining Tailings Impairs Seedling Emergence of Schinus terebinthifolia but Vigor Features Show Tolerance During Early Growth
by Poliana Noemia da Silva, Vinícius Politi Duarte, Evaristo Mauro de Castro, Bruno Montoani Silva, Josiel de Jesus Santos and Fabricio José Pereira
Forests 2025, 16(6), 950; https://doi.org/10.3390/f16060950 - 5 Jun 2025
Viewed by 314
Abstract
Soil compaction is a well-known harmful process for germination and seedling growth. Studies about compaction in mining tailings have been neglected despite being essential for the reforestation of impacted areas. This work evaluated the effects of compaction of iron mining tailings on the [...] Read more.
Soil compaction is a well-known harmful process for germination and seedling growth. Studies about compaction in mining tailings have been neglected despite being essential for the reforestation of impacted areas. This work evaluated the effects of compaction of iron mining tailings on the seedling emergence, early growth, and photosynthesis of Schinus terebinthifolia Raddi, a tolerant species with potential for reforestation. Experiments were implemented in a greenhouse where seeds of S. terebinthifolia were sown in iron mining tailings with four compaction treatments: (1) an uncompacted dry tailing, (2) uncompacted moistened tailing, (3) compacted dry tailing, and (4) compacted moistened tailing. Penetration resistance, seedling emergence, emergence speed index, seedling biometry, and photochemical traits were evaluated. Compacted moistened tailings showed the highest penetration resistance and uncompacted dry tailings the lowest. Other treatments showed intermediate means. The compacted moistened tailings produced the lowest seedling emergence rate and emergence speed index, and these parameters showed the highest means at uncompacted dry tailings with other treatments showing intermediate means. The compaction did not affect the seedling’s biometric parameters, with a similar growth among all treatments. S. terebinthifolia seedlings showed improved growth parameters during the experimental period, evidencing the potential of the species for the reforestation of impacted areas by iron mining tailings. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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14 pages, 1875 KiB  
Article
Genome-Wide Dissection of Shade Tolerance in Soybean at Seedling Stage
by Linfang Hu, Kamran Arshad, Meiying Zheng, Ran Ou, Yinmeng Song, Mengyan Xie, Yazhi Wei, Luyi Ling, Weiying Zeng and Jiaoping Zhang
Agronomy 2025, 15(6), 1382; https://doi.org/10.3390/agronomy15061382 - 4 Jun 2025
Viewed by 509
Abstract
Dense planting and intercropping are the main ways to improve soybean production. However, both confront inter- and intra-crop shading stress. This leads to stem elongation, resulting in lodging and yield losses. Most previous studies have focused on the later growth stages for shade [...] Read more.
Dense planting and intercropping are the main ways to improve soybean production. However, both confront inter- and intra-crop shading stress. This leads to stem elongation, resulting in lodging and yield losses. Most previous studies have focused on the later growth stages for shade tolerance. However, it has been found that the seedling stage is crucial, and understanding the genetic basis of shade tolerance at this stage is pivotal for yield improvement. In this study, 310 soybean accessions were used to evaluate shade tolerance under greenhouse conditions. Plant height (PH), main stem length (MSL), and hypocotyl length (HL) were examined at seedling stage, and their treatment/control ratios (PH_r, MSL_r, HL_r) were used for genetic dissection of shade tolerance. Their overall phenotypic variation and heritability (H2) ranged 22.97–36.85% and 31.66–83.81%, respectively. RTM-GWAS identified 12, 10, and 6 QTLs associated with PH_r, MSL_r, and HL_r, respectively. Among these, Block_17_11907536_11926235 was associated with both PH_r and MSL_r, and Block_1_55630414_55715065 associated with the HL_r trait showed the highest contribution (R2 = 10.38%). Additionally, seven promising candidate genes, primarily linked to ethylene-responsive transcription factors, were proposed, supported by their established roles in plant development and stress responses, as evidenced in prior studies. The germplasm, QTLs, and candidate genes identified in this study improve our understanding of shade tolerance and have the potential to accelerate the breeding of shade-resilient soybeans. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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25 pages, 2348 KiB  
Article
Microplastic-Mediated Heavy Metal Uptake in Lettuce (Lactuca sativa L.): Implications for Food Safety and Agricultural Sustainability
by Bhakti Jadhav and Agnieszka Medyńska-Juraszek
Molecules 2025, 30(11), 2370; https://doi.org/10.3390/molecules30112370 - 29 May 2025
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Abstract
This study investigates how different types of microplastics (MPs)—fibers, glitter, plastic bags, and plastic bottles—influence heavy metal uptake in lettuce (Lactuca sativa L.), a commonly consumed leafy vegetable. A controlled eight-week pot experiment was conducted in a greenhouse using contaminated loamy sand [...] Read more.
This study investigates how different types of microplastics (MPs)—fibers, glitter, plastic bags, and plastic bottles—influence heavy metal uptake in lettuce (Lactuca sativa L.), a commonly consumed leafy vegetable. A controlled eight-week pot experiment was conducted in a greenhouse using contaminated loamy sand soil (polluted with Cd, Pb, Cu, and other metals) collected from a smelter-impacted area. Microplastics were added at a concentration of 70–80 mg/kg, and lettuce seedlings were grown under phytotron conditions (22 ± 2 °C, 60 ± 5% RH, 16 h light/8 h dark) without fertilizers or external contaminants. Plant roots and shoots were harvested, and heavy metals were analyzed via MP-AES and ICP-MS. The results showed that MPs altered heavy metal mobility, bioavailability, and plant uptake. Copper accumulation in leaves decreased substantially across MP treatments, from 80.84 mg/kg in the control to 26.35 mg/kg (glitter), whereas lead and cadmium concentrations increased significantly in roots under fiber and glitter exposure (Pb increased from 12.13 mg/kg to 33.57 mg/kg and Cd from 1.70 mg/kg to 2.05 mg/kg in fiber treatment). Cobalt accumulation in leaves increased under the plastic bag treatment, indicating MP-specific metal interactions. Root growth was also affected, with fibers promoting elongation and plastic bottles restricting it. Sequential extraction revealed that MPs modified metal partitioning in soil, with Pb and Ni more strongly retained in stable fractions under some treatments. Observed trends in soil pH and organic matter content were associated with changes in metal mobility, highlighting the potential role of soil properties in mediating microplastic–metal interactions. These findings highlight the role of MPs as mediators of heavy metal transport in crops and underscore the need for clear regulatory guidelines that limit microplastic contamination in agricultural soils and promote routine monitoring to safeguard food safety and crop health. Full article
(This article belongs to the Special Issue 10th Anniversary of Green Chemistry Section)
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17 pages, 1917 KiB  
Article
Developmental and Physiological Effects of the Light Source and Cultivation Environment on Mini Cuttings of Eucalyptus dunnii Maiden
by Thalia Schilisting, Alexandra Cristina Schatz Sá, Daniel Pereira da Silva Filho, Valéria Martel da Silva, Marcio Carlos Navroski, Mariane de Oliveira Pereira, Bruno Nascimento, Carolina Moraes, Ramon Silveira de Andrade, Regiane Abjaud Estopa and Leticia Miranda
Forests 2025, 16(6), 901; https://doi.org/10.3390/f16060901 - 28 May 2025
Cited by 1 | Viewed by 475
Abstract
Eucalyptus cultivation in Brazil benefits from techniques such as mini cutting; however, adverse climatic conditions in the southern region of the country limit seedling production. This study evaluated the effects of LED lighting (blue, red, combined, and natural) and cultivation environments (greenhouse with [...] Read more.
Eucalyptus cultivation in Brazil benefits from techniques such as mini cutting; however, adverse climatic conditions in the southern region of the country limit seedling production. This study evaluated the effects of LED lighting (blue, red, combined, and natural) and cultivation environments (greenhouse with and without heating, and conventional nursery) on the propagation of Eucalyptus dunnii. The experiment, conducted in Otacílio Costa, SC, followed a two-factor (4 × 4) design with biweekly data collection from March to September 2024. Variables analyzed included sprout productivity, rooting performance, phytosanitary status (powdery mildew incidence), physiological parameters (photosynthetic rate, stomatal conductance, transpiration), and nutritional content. The results showed that LED lighting and cultivation environments did not affect the incidence of powdery mildew. Rooting was enhanced during winter in the heated mini-tunnel system. Sprout productivity was highest in the mini tunnel (~360 sprouts/m2 under red light in winter), while heated environments led to a reduction in sprout production. Physiological variables such as photosynthetic rate and stomatal conductance were improved in the heated mini-tunnel, and transpiration responded to the interaction between light spectrum and environment. The evaluated factors did not cause significant changes in the nutritional profile of the mini stumps. It is concluded that the mini tunnel, particularly when heated during winter, enhances rooting and physiological responses, while red LED light increases sprout productivity. Supplemental LED lighting proved to be a strategic tool for overcoming seasonal limitations in Eucalyptus propagation. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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