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19 pages, 2287 KiB  
Article
Bird Community Structure Changes as Araucaria Forest Cover Increases in the Highlands of Southeastern Brazil
by Carla Suertegaray Fontana, Lucilene Inês Jacoboski, Jonas Rafael Rodrigues Rosoni, Juliana Lopes da Silva, Filipe Augusto Pasa Bernardi, Pamela Eliana Malmoria, Christian Beier and Sandra Maria Hartz
Birds 2025, 6(3), 37; https://doi.org/10.3390/birds6030037 - 16 Jul 2025
Viewed by 856
Abstract
The Brazilian Araucaria Forest (AF) now covers only 1% of its original extent due to significant degradation, making conservation a challenge. The AF occurs in a mosaic alongside grassland and Atlantic Forest ecosystems, influencing bird species’ distribution through ecological processes. We compared the [...] Read more.
The Brazilian Araucaria Forest (AF) now covers only 1% of its original extent due to significant degradation, making conservation a challenge. The AF occurs in a mosaic alongside grassland and Atlantic Forest ecosystems, influencing bird species’ distribution through ecological processes. We compared the composition and functional diversity of the bird community along a gradient of AF cover in a protected area (Pró-Mata Private Natural Heritage Reserve) in southern Brazil. Bird sampling was conducted using MacKinnon lists along five trails with different histories of vegetation suppression, based on forest cover estimates from landscape imagery. Birds were functionally classified based on morphological and ecological traits. We recorded 191 bird species in total. We found higher bird richness in trails with less forest cover, while functional diversity responded inversely to vegetation cover. Bird species composition shifted from more open-habitat specialists to more forest specialists with the increasing forest cover and vegetation structural complexity. These findings highlight the ecological importance of maintaining vegetation heterogeneity, as vegetation mosaics enhance avian species richness and support a broader range of functional traits and ecosystem processes. We recommend the conservation of Araucaria Forest–grassland mosaics as a strategic approach to support multidimensional biodiversity and sustain key ecological functions in southern Brazil. Full article
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22 pages, 3382 KiB  
Article
Communities of Arbuscular Mycorrhizal Fungi and Their Effects on Plant Biomass Allocation Patterns in Degraded Karst Grasslands of Southwest China
by Wangjun Li, Xiaolong Bai, Dongpeng Lv and Yurong Yang
J. Fungi 2025, 11(7), 525; https://doi.org/10.3390/jof11070525 - 16 Jul 2025
Viewed by 333
Abstract
The biomass allocation patterns between aboveground and belowground are an essential functional trait for plant survival under a changing environment. The effects of arbuscular mycorrhizal fungi (AMF) communities on plant biomass allocation, particularly in degraded Festuca ovina grasslands in ecologically fragile karst areas, [...] Read more.
The biomass allocation patterns between aboveground and belowground are an essential functional trait for plant survival under a changing environment. The effects of arbuscular mycorrhizal fungi (AMF) communities on plant biomass allocation, particularly in degraded Festuca ovina grasslands in ecologically fragile karst areas, remain unclear. Therefore, we conducted a field investigation combined with a greenhouse experiment to explore the importance of AMF compared to bacteria and fungi for plant biomass allocation. The results showed that plant biomass in degraded grasslands exhibited allometric biomass allocation, contrasting with isometric partitioning in non-degraded grasslands. AMF, not bacteria or fungi, were the primary microbial mediators of grassland degradation effects on plant biomass allocation based on structural equation modeling. The greenhouse experiment demonstrated that the selected AMF keystone species from the field study performed according to ecological network analysis, particularly multi-species combinations, enhanced the belowground biomass allocation of F. ovina under rocky desertification stress compared to single-species inoculations, through decreasing soil pH, enhancing alkaline phosphatase (ALP) activity, and increasing the expression level of AMF-inducible phosphate transporter (PT4). This study highlights the critical role of the AMF community, rather than individual species, in mediating plant survival strategies under rocky desertification stress. Full article
(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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23 pages, 5108 KiB  
Review
The Invasive Mechanism and Impact of Arundo donax, One of the World’s 100 Worst Invasive Alien Species
by Hisashi Kato-Noguchi and Midori Kato
Plants 2025, 14(14), 2175; https://doi.org/10.3390/plants14142175 - 14 Jul 2025
Viewed by 365
Abstract
Arundo donax L. has been introduced in markets worldwide due to its economic value. However, it is listed in the world’s 100 worst alien invasive species because it easily escapes from cultivation, and forms dense monospecific stands in riparian areas, agricultural areas, and [...] Read more.
Arundo donax L. has been introduced in markets worldwide due to its economic value. However, it is listed in the world’s 100 worst alien invasive species because it easily escapes from cultivation, and forms dense monospecific stands in riparian areas, agricultural areas, and grassland areas along roadsides, including in protected areas. This species grows rapidly and produces large amounts of biomass due to its high photosynthetic ability. It spreads asexually through ramets, in addition to stem and rhizome fragments. Wildfires, flooding, and human activity promote its distribution and domination. It can adapt to various habitats and tolerate various adverse environmental conditions, such as cold temperatures, drought, flooding, and high salinity. A. donax exhibits defense mechanisms against biotic stressors, including herbivores and pathogens. It produces indole alkaloids, such as bufotenidine and gramine, as well as other alkaloids that are toxic to herbivorous mammals, insects, parasitic nematodes, and pathogenic fungi and oomycetes. A. donax accumulates high concentrations of phytoliths, which also protect against pathogen infection and herbivory. Only a few herbivores and pathogens have been reported to significantly damage A. donax growth and populations. Additionally, A. donax exhibits allelopathic activity against competing plant species, though the allelochemicals involved have yet to be identified. These characteristics may contribute to its infestation, survival, and population expansion in new habitats as an invasive plant species. Dense monospecific stands of A. donax alter ecosystem structures and functions. These stands impact abiotic processes in ecosystems by reducing water availability, and increasing the risk of erosion, flooding, and intense fires. The stands also negatively affect biotic processes by reducing plant diversity and richness, as well as the fitness of habitats for invertebrates and vertebrates. Eradicating A. donax from a habitat requires an ongoing, long-term integrated management approach based on an understanding of its invasive mechanisms. Human activity has also contributed to the spread of A. donax populations. There is an urgent need to address its invasive traits. This is the first review focusing on the invasive mechanisms of this plant in terms of adaptation to abiotic and biotic stressors, particularly physiological adaptation. Full article
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16 pages, 1524 KiB  
Article
Analysis of ROH Characteristics Across Generations in Grassland-Thoroughbred Horses and Identification of Loci Associated with Athletic Traits
by Wenqi Ding, Wendian Gong, Tugeqin Bou, Lin Shi, Yanan Lin, Xiaoyuan Shi, Zheng Li, Huize Wu, Manglai Dugarjaviin and Dongyi Bai
Animals 2025, 15(14), 2068; https://doi.org/10.3390/ani15142068 - 13 Jul 2025
Viewed by 389
Abstract
The core objective of racehorse breeding is to enhance the speed and endurance of the horses. The Grassland-Thoroughbred is an emerging horse breed developed in northern China in recent years, characterized by excellent speed performance, enduring stamina, and strong environmental adaptability. However, research [...] Read more.
The core objective of racehorse breeding is to enhance the speed and endurance of the horses. The Grassland-Thoroughbred is an emerging horse breed developed in northern China in recent years, characterized by excellent speed performance, enduring stamina, and strong environmental adaptability. However, research on the genetic characteristics within this breed and the genes associated with athletic performance remains relatively limited. We conducted whole-genome resequencing of Grassland-Thoroughbred F1, F2, F3, and the crossbred population (CY) and obtained a total of 4056.23 Gb of high-quality data after quality control. The single nucleotide polymorphisms (SNPs) were primarily distributed in intergenic regions, followed by intronic regions. Principal component analysis (PCA) and STRUCTURE revealed clear distinctions among the generations, with a notable overlap between CY and F3. Using the SNP dataset, we analyzed the number and length distribution patterns of runs of homozygosity (ROHs) in the genomes of different generational groups of Grassland-Thoroughbreds. Short ROHs ranging from 0.5 to 2 Mb were the most abundant, with the following distribution: F1 (85.15%) > F2 (82.92%) > CY (78.75%) > F3 (77.51%). Medium-length ROHs (2–8 Mb) and long ROHs (>8 Mb) together exhibited a similar but opposite trend. The average length of ROHs was 1.57 Mb. The inbreeding coefficients (F_ROH) among different generational groups of Grassland-Thoroughbreds were as follows: F1 (0.0942) < F2 (0.1197) < CY (0.1435) < F3 (0.1497). Through ROH island analysis, 10 high-frequency ROH regions were identified and annotated with 120 genes. Genomic regions and candidate genes associated with athletic traits—ACAD8, OPCML, PRDX2, NTM, NDUFB7, SCL25A15, FOXO1, and SLC4A10—were identified. These genes may play important roles in regulating muscle performance, mitochondrial energy supply, and learning and memory processes in horses and are closely associated with the athletic ability of the Grassland-Thoroughbred population. This study is the first to systematically characterize the genomic diversity and inbreeding dynamics of the Grassland-Thoroughbred during the breeding process. It identifies candidate genes that may influence athletic performance, thereby providing an important molecular foundation and theoretical basis for the genetic improvement and performance-based selection of this emerging breed. Full article
(This article belongs to the Section Equids)
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15 pages, 1742 KiB  
Article
Silicon Reduce Structural Carbon Components and Its Potential to Regulate the Physiological Traits of Plants
by Baiying Huang, Danghui Xu, Wenhong Zhou, Yuqi Wu and Wei Mou
Plants 2025, 14(12), 1779; https://doi.org/10.3390/plants14121779 - 11 Jun 2025
Viewed by 391
Abstract
Phosphorus (P) and silicon (Si) could profoundly affect the net primary productivity (ANPP) of grassland ecosystems. However, how ecosystem biomass will respond to different Si addition, especially under a concurrent increase in P fertilization, remains limited. With persistent demand for grassland utilization, there [...] Read more.
Phosphorus (P) and silicon (Si) could profoundly affect the net primary productivity (ANPP) of grassland ecosystems. However, how ecosystem biomass will respond to different Si addition, especially under a concurrent increase in P fertilization, remains limited. With persistent demand for grassland utilization, there is a need to enhance and sustain the productivity of grasslands on the Qinghai–Tibet Plateau. Three P addition rates (0, 400, 800, and 1200 kg Ca(H2PO4)2 ha−1 yr−1) without Si and with Si (14.36 kg H4SiO4 ha−1 yr−1) were applied to alpine grassland on the Qinghai–Tibet Plateau to evaluate the responses of aboveground biomass and the underlying mechanisms linking to structural carbon composition and physiological traits of grasses and forbs. Our results show that the application of Si significantly reduced the lignin, cellulose, hemicellulose, and total phenol contents of both grasses and forbs. Additionally, the addition of P, Si, and phosphorus and silicon (PSi) co-application significantly increased the net photosynthetic rate (Pn) and light use efficiency (LUE) of grasses and forbs. Moreover, Si promoted the absorption of N and P by plants, resulting in significant changes in the Si:C, Si:P, and Si:N ratios and increasing the aboveground biomass. Our findings suggest that Si can replace structural carbohydrates and regulate the absorption and utilization of N and P to optimize the photosynthetic process of leaves, thereby achieving greater biomass. In summary, Si supplementation improves ecosystem stability in alpine meadows by optimizing plant functions and increasing biomass accumulation. Full article
(This article belongs to the Special Issue Silicon and Its Physiological Role in Plant Growth and Development)
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16 pages, 824 KiB  
Article
Detection of Cassava Mosaic Disease and Assessment of Selected Agronomic Traits of Cassava (Manihot esculenta)
by Musa Decius Saffa, Alusaine Edward Samura, Mohamed Alieu Bah, Angela Obiageli Eni, Ezechiel Bionimian Tibiri, Adama Sagnon, Fidèle Tiendrébéogo, Justin Simon Pita, Prince Emmanuel Norman and Raymonda Adeline Bernardette Johnson
Horticulturae 2025, 11(6), 618; https://doi.org/10.3390/horticulturae11060618 - 1 Jun 2025
Cited by 1 | Viewed by 672
Abstract
A study was conducted in Sierra Leone to identify cassava plants that are asymptomatic and symptomatic to cassava mosaic disease (CMD) and collect planting materials for field trial establishment; determine the prevalence of CMD caused by African cassava mosaic virus (ACMV) and East [...] Read more.
A study was conducted in Sierra Leone to identify cassava plants that are asymptomatic and symptomatic to cassava mosaic disease (CMD) and collect planting materials for field trial establishment; determine the prevalence of CMD caused by African cassava mosaic virus (ACMV) and East African cassava mosaic virus (EACMV) using the Nuru App and virus indexing techniques; and assess selected agronomic traits in cassava. A total of 80 cassava farms spanning four provinces (Southern, Eastern, Northern, and North-West) were surveyed in April 2022. Findings showed that the cassava variants of the experiment and locations significantly (p < 0.001) affected CMD incidence, severity, growth, and fresh storage root yield traits. The CMD incidence (87.0%) and whitefly abundance (144.8) were highest, and the CMD severity was moderate (4.0) for the plants derived from cuttings obtained from symptomatic Cocoa mother plants, while plants derived from cuttings of improved mother plants exhibited no visible symptoms of the disease and the lowest population (45.1) of whiteflies. The Nuru app is inefficient for phenotypically detecting CMD at 3 months after planting (MAP), while at 6, 9 and 12 MAP, the app efficiently detected the disease using a molecular analysis technique. Resistant, non-diseased plants derived from cuttings obtained from SLICASS 4 mother plants produced the highest fresh storage root yield (54.9 t ha−1). The highest storage root yield loss was recorded in the plants obtained from cuttings of symptomatic variety Cocoa mother plants harvested at Matotoka grassland ecology, Bombali District (90.2%), while those harvested from cuttings of asymptomatic variety Cocoa mother plants grown at the four test environments had a similar storage root yield loss ranging from 40.3 to 46.2%. Findings suggest the importance of genetic variability, environmental adaptation, utilization of diseased-free materials, and phytosanitation as disease management strategies for increased production. These findings provide important insights into the distribution, impact, and spread of CMD and whitefly abundance in the studied areas in Sierra Leone that could be exploited for cassava production, productivity, conservation, and population improvement. Full article
(This article belongs to the Section Plant Pathology and Disease Management (PPDM))
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17 pages, 577 KiB  
Article
Economic Performance and Meat Quality Traits of Extensively Reared Beef Cattle in Greece
by Vasiliki Papanikolopoulou, Stella Dokou, Anestis Tsitsos, Stergios Priskas, Sotiria Vouraki, Angeliki Argyriadou and Georgios Arsenos
Animals 2025, 15(11), 1601; https://doi.org/10.3390/ani15111601 - 29 May 2025
Viewed by 483
Abstract
Extensive cattle farming significantly contributes to Greece’s agricultural economy. In such systems, animals mainly graze on natural grasslands whose biodiversity significantly affects meat quality traits. In Greece, the sector faces several economic challenges, while the literature investigating beef quality produced by these systems [...] Read more.
Extensive cattle farming significantly contributes to Greece’s agricultural economy. In such systems, animals mainly graze on natural grasslands whose biodiversity significantly affects meat quality traits. In Greece, the sector faces several economic challenges, while the literature investigating beef quality produced by these systems is scarce. Hence, this study aimed to (i) evaluate farms’ economic performance; (ii) assess meat quality; and (iii) investigate the presence of heavy metals in liver samples of extensively reared beef cattle. The study involved three farms located in the Axios River Delta, a protected area of significant ecological importance in Northern Greece. A designated questionnaire was used to collect farm technical (herd size, meat production, grazing, feeding, reproduction, animal health) and economic data (income, variable costs). Meat samples of the Longissimus dorsi muscle (ninth rib) from 54 carcasses were collected and subjected to physicochemical (color, pH, texture, chemical composition, fatty acid profile) and microbiological analyses. Additionally, heavy metal analysis was conducted on 14 liver samples. A comparative analysis using parametric and non-parametric tests was performed to assess differences in meat quality traits between the 1st and 15th days of storage. The economic analysis showed that all studied farms operated with losses, with the average gross margin excluding subsidies being negative at EUR 130.5 ± 92.60/year per animal. Beef exhibited low fat content (1.1 ± 1.12%), with an average pH24 value of 5.5 ± 0.36, respectively. The concentrations of polyunsaturated, monounsaturated, and saturated fatty acids were 2.7 ± 0.72%, 44.6 ± 4.71%, and 47.3 ± 4.91%, respectively. Over the 15-day storage period, the yellowness (b*) value (p < 0.01), hue angle (p < 0.001), cohesiveness (p < 0.01), and springiness (p < 0.01) significantly decreased, while the lightness (L*) value significantly increased (p < 0.01). The mean Total Mesophilic Viable Counts and Total Enterobacterales were 5.0 log10 CFU/g and 2.34 log10 CFU/g, respectively, while heavy metal concentrations in bovine livers were below the maximum limits set by the European Commission. The results suggest that, despite the financial losses observed, beef’s improved color parameters during storage, along with other favorable quality traits, highlight the potential of extensive cattle farming to meet consumer demand and support value-added marketing. Full article
(This article belongs to the Section Cattle)
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19 pages, 3356 KiB  
Article
Grazing Exclusion Affects Alpine Meadow Plants’ Root Morphological Traits and Reduces Their Cold Resistance on the Qinghai–Tibetan Plateau
by Jiuyun Chen and Yan Yan
Sustainability 2025, 17(11), 5010; https://doi.org/10.3390/su17115010 - 29 May 2025
Viewed by 549
Abstract
Against the background of climate change, grazing accelerates the warming and drying processes in grasslands. There is a relatively clear temperature and humidity difference between grassland used for grazing and grassland that has been excluded from grazing practices. This paper asks whether temperature [...] Read more.
Against the background of climate change, grazing accelerates the warming and drying processes in grasslands. There is a relatively clear temperature and humidity difference between grassland used for grazing and grassland that has been excluded from grazing practices. This paper asks whether temperature and humidity differences affect plant roots and cold resistance. Representative plants from an alpine meadow on the eastern margin of the Qinghai–Tibetan Plateau were selected under grazing exclusion and grazing conditions. Dominant plants within and outside of an alpine meadow enclosed for 10 years in the study area were selected as the research objects to study the root morphology and physiological indices of the cold resistance of these plants. The results showed that (1) grazing exclusion (GE) was beneficial for soil temperature and water retention, reduced soil pH, and increased soil nutrient content. Under grazing exclusion conditions, all plant root morphological traits, except root tissue density, increased compared with those under grazing grassland (FG) conditions. Grazed plants adopted resource acquisition strategies, while grazing exclusion plants adopted resource conservation strategies. (2) The changes in the physiological indices of cold resistance in different years and grazing treatments were different. In 2023, the superoxide dismutase (SOD) activity and soluble protein content in GE conditions were significantly lower than those in FG conditions, while the peroxidase (POD) activity was significantly higher than that under FG conditions. The activity of catalase (CAT) in the GE plot was significantly lower than that in the FG plot in 2024. The cold resistance of Gramineae species was lower than that of non-Gramineae plants. A redundancy analysis (RDA) of plant root morphological traits, soil properties, and cold resistance showed that root length and soil pH were the most important factors affecting plant cold resistance. We concluded that grazing exclusion is conducive to plant root growth, but also acidifies the soil and reduces plant cold resistance. Full article
(This article belongs to the Section Environmental Sustainability and Applications)
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23 pages, 19370 KiB  
Article
Unraveling Phenological Dynamics: Exploring Early Springs, Late Autumns, and Climate Drivers Across Different Vegetation Types in Northeast China
by Jiayu Liu, Haifeng Zou, Yinghui Zhao, Xiaochun Wang and Zhen Zhen
Remote Sens. 2025, 17(11), 1853; https://doi.org/10.3390/rs17111853 - 26 May 2025
Viewed by 449
Abstract
Understanding plant phenology dynamics is essential for ecosystem health monitoring and climate change impact assessment. This study generated 4-day, 500 m land surface phenology (LSP) in Northeast China (NEC) from 2001 to 2021 using interpolated and Savitzky–Golay filtered kernel normalized difference vegetation index [...] Read more.
Understanding plant phenology dynamics is essential for ecosystem health monitoring and climate change impact assessment. This study generated 4-day, 500 m land surface phenology (LSP) in Northeast China (NEC) from 2001 to 2021 using interpolated and Savitzky–Golay filtered kernel normalized difference vegetation index (kNDVI) derived from MODIS. Spatial patterns, trends, and climate responses of phenology were analyzed across ecoregions and vegetation. Marked spatial heterogeneity was noted: forests showed the earliest start of season (SOS, ~125th day) and longest growing season (LOS, ~130 days), while shrublands had the latest SOS (~150th day) and shortest LOS (~96 days). Grasslands exhibited strong east–west gradients in SOS and EOS. From 2001 to 2021, SOS of natural vegetations in NEC advanced by 0.23 d/a, EOS delayed by 0.12 d/a, and LOS extended by 0.38 d/a. Coniferous forests, especially evergreen needle-leaved forests, exhibited opposite trends due to cold-resistant traits and an earlier EOS to avoid leaf cell freezing. Temperature was the main driver of SOS, with spring and winter temperatures influencing 48.8% and 24.2% of the NEC region, respectively. Precipitation mainly affected EOS, especially in grasslands. Drought strongly influences SOS, while precipitation affects EOS. This study integrates high-resolution phenology utilizing the kNDVI with various seasonal climate drivers, offering novel insights into vegetation-specific and ecoregion-based phenological dynamics in the context of climate change. Full article
(This article belongs to the Section Ecological Remote Sensing)
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15 pages, 7460 KiB  
Article
Preliminary Study on the Genetic Structure and Functional Candidate Genes of Grassland-Thoroughbreds Based on Whole-Genome Resequencing
by Wenqi Ding, Wendian Gong, Tugeqin Bou, Lin Shi, Yanan Lin, Xiaoyuan Shi, Zheng Li, Huize Wu, Manglai Dugarjaviin, Dongyi Bai and Yiping Zhao
Animals 2025, 15(10), 1462; https://doi.org/10.3390/ani15101462 - 19 May 2025
Cited by 1 | Viewed by 458
Abstract
Speed and endurance are the primary goals in racehorse breeding. The Grassland-Thoroughbred is a newly developed breed in northern China that combines speed, endurance, and environmental adaptability. However, current research on the genetic background of this breed and the genes associated with athletic [...] Read more.
Speed and endurance are the primary goals in racehorse breeding. The Grassland-Thoroughbred is a newly developed breed in northern China that combines speed, endurance, and environmental adaptability. However, current research on the genetic background of this breed and the genes associated with athletic performance remains limited. We conducted whole-genome resequencing on Mongolian (MG), Thoroughbred (TB), Xilingol (XL), and Grassland-Thoroughbred (CY) horses, generating 3813.74 Gb of clean data after quality control. The number of transitions was significantly higher than that of transversions. The SNPs were mainly located in intergenic regions, followed by intronic regions. Principal component analysis, population structure analysis, and phylogenetic tree results indicated that the CYs had a distinct genetic background from MGs, TBs, and XLs, but based on PCA and phylogenetic clustering, they showed greater genetic similarity to Thoroughbreds. Using fixation index (Fst) and nucleotide diversity ratio (π ratio) analyses between CYs and the other three horse populations, 70, 76, and 80 candidate genes were identified from the intersection of the two methods, respectively. A total of 179 candidate genes were obtained from the union of the three groups. Candidate genes associated with athletic performance (ATF2, NDUFS7, PRKG1, IGFN1, MTOR, TTN) and growth and development (MTOR, IGFN1, COL21A1, NEDD4, PIEZO1) were screened. These genes are related to athletic ability and developmental processes in the CY population. Our study reveals genomic information associated with important traits in Grassland-Thoroughbreds and identifies valuable candidate genes, laying a foundation for future breeding and trait association studies. Full article
(This article belongs to the Section Animal Genetics and Genomics)
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16 pages, 3432 KiB  
Article
Whole-Genome Resequencing Analysis of Copy Number Variations Associated with Athletic Performance in Grassland-Thoroughbred
by Wenqi Ding, Wendian Gong, Tugeqin Bou, Lin Shi, Yanan Lin, Xiaoyuan Shi, Zheng Li, Huize Wu, Manglai Dugarjaviin and Dongyi Bai
Animals 2025, 15(10), 1458; https://doi.org/10.3390/ani15101458 - 18 May 2025
Viewed by 467
Abstract
Copy number variation (CNV) is an important source of genetic variation. However, studies utilizing whole-genome sequencing to investigate CNVs in horse populations and their effects on traits remain relatively limited. This study aims to address the lack of research on the impact of [...] Read more.
Copy number variation (CNV) is an important source of genetic variation. However, studies utilizing whole-genome sequencing to investigate CNVs in horse populations and their effects on traits remain relatively limited. This study aims to address the lack of research on the impact of copy number variation (CNV) on racing performance in horse populations, providing new insights for locally bred racing breeds. We analyzed 60 offspring derived from the crossbreeding of Thoroughbred horses and Xilingol horses. These horses were temporarily named “Grassland-Thoroughbred” and were divided into two groups: 30 racing horses and 30 non-racing horses. A total of 89,527 CNVs were identified. After merging overlapping CNVs, 982 copy number variation regions (CNVRs) were recognized, among which the racing horse group (RH) had 29 unique CNVRs, while the non-racing horse group (NR) had 4 unique CNVRs. In addition, a total of 195 genes overlapping with CNVRs were identified. Transcriptomic analysis revealed 120 differentially expressed genes, with MTPN expressed in both CNVR-overlapping genes and mRNA. Both CNVR-overlapping genes and differentially expressed genes were enriched in the MAPK signaling pathway; CNV may affect gene expression through gene dosage effects or regulatory mechanisms. Using Vst statistical analysis, we further screened candidate CNVRs in autosomes that exceeded the 95% differentiation threshold between the RH and NR populations. Several key genes associated with energy metabolism and muscle function were identified, including AGT, IGFN1, IMMPL2, SLC41A3, AOX4, and ACAD11. These findings provide new insights into the genetic structural variation in racing performance and adaptability, fill the gap in CNV studies in the genomics of Grassland-Thoroughbred horses, and offer valuable genomic data for optimizing breeding strategies in native racing horse populations. Full article
(This article belongs to the Section Equids)
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15 pages, 2940 KiB  
Article
Changes in Plant Nitrogen Uptake Strategies Following Vegetation Recovery in Karst Regions
by Lin Yang, Lijun Liu, Hui Yang, Shuting Yang, Tongbin Zhu, Lei Meng and Dongni Wen
Forests 2025, 16(5), 839; https://doi.org/10.3390/f16050839 - 18 May 2025
Viewed by 351
Abstract
Understanding plant nitrogen (N) uptake strategies during vegetation recovery is essential for restoring and rehabilitating degraded ecosystems. However, there are few studies on plant N uptake strategies in karst regions. In this study, space-for-time substitution was used to investigate the dynamic changes in [...] Read more.
Understanding plant nitrogen (N) uptake strategies during vegetation recovery is essential for restoring and rehabilitating degraded ecosystems. However, there are few studies on plant N uptake strategies in karst regions. In this study, space-for-time substitution was used to investigate the dynamic changes in plant N uptake strategies during vegetation restoration. Grassland, shrub–grassland, shrubland, and woodland naturally recovering in karst ecosystems were chosen as the research objects. The dominant species at each stage were investigated. Dominant plant N uptake rates were measured using the 15N labeling technique, and plant root functional traits and available soil N were determined. Our results showed that soil inorganic N content and composition varied significantly with vegetation recovery. In early vegetation recovery stages, the soil inorganic N content was low and dominated by ammonium (NH4+), while in the late stages, soil inorganic N content increased, and nitrate (NO3) became the dominant form. In early vegetation recovery stages, dominant plants preferentially absorbed NH4+, contributing to 90.3%–98.5% of the total N uptake. With vegetation recovery, plants increased the NO3 uptake ratio from 1.48%–9.42% to 30.1%–42.6%. Additionally, the root functional traits of dominant plants changed significantly during vegetation recovery. With vegetation recovery, specific root lengths and specific root areas decreased, while root N content and plant N uptake rates increased. In summary, plants developed N uptake strategies coordinated with soil N supply by modifying root functional traits following vegetation recovery in karst regions. Full article
(This article belongs to the Section Forest Ecology and Management)
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17 pages, 2927 KiB  
Article
Multitrophic and Multidimensional Insights into Biodiversity and Functional Trait Responses to Precipitation Changes in Alpine Grasslands
by Yu Liu, Chengxiang Ding and Zhanjun Quan
Microorganisms 2025, 13(5), 1011; https://doi.org/10.3390/microorganisms13051011 - 28 Apr 2025
Viewed by 629
Abstract
Biodiversity and functional traits are increasingly recognized as pivotal factors in regulating ecosystem functioning and stability. However, the patterns and processes of multidimensional biodiversity and functional traits along environmental gradients remain insufficiently understood. In this study, we examined taxonomic, phylogenetic, and functional diversity [...] Read more.
Biodiversity and functional traits are increasingly recognized as pivotal factors in regulating ecosystem functioning and stability. However, the patterns and processes of multidimensional biodiversity and functional traits along environmental gradients remain insufficiently understood. In this study, we examined taxonomic, phylogenetic, and functional diversity across multiple trophic levels in 38 alpine grassland sites along a precipitation gradient on the Qinghai–Tibet Plateau. Our findings reveal asynchronous responses of taxonomic, phylogenetic, and functional diversity metrics, as well as functional traits across trophic levels, to variations in precipitation. Soil microbial diversity and functional traits exhibited stronger responses to precipitation changes compared to plant communities, with a tighter coupling observed between microbial diversity and microbial functional traits. Climate and soil properties jointly regulated diversity and functional trait metrics, with the climate exerting greater influence on functional traits and soil properties playing a dominant role in shaping diversity patterns. This study highlights the distinct responses of biodiversity and functional trait attributes to environmental shifts, emphasizing the importance of integrating multidimensional and multitrophic perspectives to advance our understanding of community assembly processes. Full article
(This article belongs to the Special Issue State-of-the-Art Environmental Microbiology in China 2025)
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23 pages, 11644 KiB  
Article
Construction of a Green and Sustainable Cultivation Model for Annual Forage Oat in Alpine Ecosystems: Optimization and Synergistic Mechanisms of Combined Application of Microbial Fertilizers and Organic Fertilizers
by Zongcheng Cai, Jianjun Shi, Liangyu Lv, Pei Gao, Hairong Zhang, Fayi Li, Shouquan Fu, Qingqing Liu and Shancun Bao
Plants 2025, 14(9), 1271; https://doi.org/10.3390/plants14091271 - 22 Apr 2025
Viewed by 429
Abstract
The aim of this study was to establish a green fertilization regime combining microbial fertilizers and livestock manure organic fertilizer for two dominant oat cultivars (Avena sativa L. ‘Baiyan No.7’ and ‘Qingyin No.2’) in alpine ecosystems, providing technical support for sustainable forage [...] Read more.
The aim of this study was to establish a green fertilization regime combining microbial fertilizers and livestock manure organic fertilizer for two dominant oat cultivars (Avena sativa L. ‘Baiyan No.7’ and ‘Qingyin No.2’) in alpine ecosystems, providing technical support for sustainable forage production systems in grassland pastoral areas of the Qinghai-Tibet Plateau. The experiment was conducted following the principles of a randomized block design, with five application rates each of effective microbial fertilizer (EM) and compound microbial fertilizer (FH) applied in combination with 18,000 kg·hm−2 of livestock manure organic fertilizer to systematically analyze their effects on oat agronomic traits, yield quality, and soil health. Key results demonstrated the following: for Avena sativa ‘Baiyan No.7’, effective microbial fertilizer (EM) application at 15.00 kg·hm−2 significantly increased plant height by 41.29% (p < 0.05), while effective microbial fertilizer (EM) at 18.75 kg·hm−2 optimized stomatal conductance and the transpiration rate by 73.29% and 46.42%, respectively. For Avena sativa L.‘Qingyin No.2’, compound microbial fertilizer (FH) application at 22.50 kg·hm−2 enhanced plant height and relative chlorophyll content (SPAD value) of the flag leaf by 50.92% and 47.75%. Yield analysis revealed that compound microbial fertilizer (FH) application at 22.50 kg·hm−2 increased the fresh forage yield and dry matter yield of ‘Baiyan No.7’ by 34.53% and 38.64%, respectively, with crude protein content reaching 11.02%. Maximum fresh forage yield (38,073.00 kg·hm−2) for ‘Qingyin No.2’ was achieved with effective microbial fertilizer (EM) at 11.25 kg·hm−2, while compound microbial fertilizer (FH) at 22.50 kg·hm−2 facilitated synergistic accumulation of crude protein (12.57%) and soluble sugars (15.58%). Soil organic carbon increased by 28.85% under compound microbial fertilizer (FH) at 22.50 kg·hm−2 for ‘Baiyan No.7’, and by 26.21% under effective microbial fertilizer (EM) at 18.75 kg·hm−2 for ‘Qingyin No.2’. In summary, a cultivar-specific green fertilization system was established: for Avena sativa L. ‘Baiyan No.7’: the application of 18.75 kg·hm−2 effective microorganisms fertilizer with 18,000 kg·hm−2 organic manure; for Avena sativa L. ‘Qingyin No.2’: the application of 22.50 kg·hm−2 compound microbial fertilizer with 18,000 kg·hm−2 organic manure. This system achieved triple sustainability objectives in alpine oat production: enhancing yield, optimizing quality, and improving soil health. Full article
(This article belongs to the Special Issue Advances in Soil Fertility Management for Sustainable Crop Production)
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33 pages, 845 KiB  
Review
Sustainable Warm-Climate Forage Legumes: Versatile Products and Services
by James P. Muir, José C. Batista Dubeux Junior, Mércia V. Ferreira dos Santos, Jamie L. Foster, Rinaldo L. Caraciolo Ferreira, Mário de Andrade Lira, Barbara Bellows, Edward Osei, Bir B. Singh and Jeff A. Brady
Grasses 2025, 4(2), 16; https://doi.org/10.3390/grasses4020016 - 18 Apr 2025
Cited by 1 | Viewed by 1427
Abstract
Forage legumes, besides their use as ruminant feed supplements, contribute to other agricultural, forestry and natural ecosystems’ sustainability around the world. Our objective in this summary is to emphasize that versatility in the face of biotic, abiotic and socio-economic variability is among the [...] Read more.
Forage legumes, besides their use as ruminant feed supplements, contribute to other agricultural, forestry and natural ecosystems’ sustainability around the world. Our objective in this summary is to emphasize that versatility in the face of biotic, abiotic and socio-economic variability is among the most important traits that forage legumes contribute to sustaining human populations in those diverse ecosystems. Forage legumes could contribute even more to agroecosystems if we 1. consider ecosystem services as well as food, feed and fuel production; 2. more fully exploit what we already know about forage legumes’ multiple uses; and 3. focus greater attention and energy exploring and expanding versatility in currently used and novel versatile species. To draw attention to the importance of this versatility to sustainable grasslands, here we review multiple legumes’ roles as forage, bioenergy, pulses (legume seeds for human consumption), pharmaceuticals and cover crops as well as environmental services, in particular soil health, C sequestration and non-industrial organic N. The major points we single out as distinguishing sustainable versatile forage legumes include (1) multiple uses; (2) adaptation to a wide range of edaphoclimatic conditions; (3) flexible economic contributions; and (4) how genomics can harness greater legume versatility. We predict that, because of this versatility, forage legumes will become ever more important as climates change and human pressures on sustainable agro-environments intensify. Full article
(This article belongs to the Special Issue The Role of Forage in Sustainable Agriculture)
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