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16 pages, 3880 KB  
Article
Boronic Derivatives of Thiosemicarbazones as Tyrosinase Inhibitors
by Michał Jewgiński, Msanif Msanif, Honorata Zachary, Mateusz Psurski and Rafał Latajka
Pharmaceutics 2025, 17(10), 1300; https://doi.org/10.3390/pharmaceutics17101300 (registering DOI) - 5 Oct 2025
Abstract
Background: Tyrosinase is a copper-dependent oxyreductase capable of catalyzing the oxidation of mono- and diphenols. Its activity is crucial in the biosynthetic pathway of melanin, the pigment responsible for the pigmentation of mammalian skin and fur, and protecting their skin from harmful UV [...] Read more.
Background: Tyrosinase is a copper-dependent oxyreductase capable of catalyzing the oxidation of mono- and diphenols. Its activity is crucial in the biosynthetic pathway of melanin, the pigment responsible for the pigmentation of mammalian skin and fur, and protecting their skin from harmful UV radiation. Overproduction of this pigment leads to numerous pathological conditions, including the most severe form of skin cancer—malignant melanoma. Furthermore, tyrosinase produced in plant tissues leads to the browning of damaged vegetables and fruits. Therefore, the search for compounds that effectively and efficiently control tyrosinase activity is desirable for both pharmaceutical and food applications. Methods: A group of six boronate derivatives of thiosemicarbazones was synthesized, and their inhibitory properties against tyrosinase were determined. Furthermore, their ability to inhibit melanogenesis and proliferation in SK-MEL-3 and Hs294T cells was investigated. Docking simulations were performed to determine the nature of the inhibitor–protein interactions. Results: The tested inhibitors exhibited half-maximal inhibitory concentrations (IC50) in the micromolar range. The best inhibitor, compound 6, had an IC50 of 1.4 µM. The tested compounds exhibited poor selectivity for cell lines capable of high and low tyrosinase overexpression, with inhibitor 4 proving to be the most selective compound among those tested. Molecular modeling results indicate that the compounds with the highest activity against tyrosinase interact with the active cavity and the copper ions present within it via a boron moiety substituted on the aromatic ring of the thiosemicarbazones. Cell-based experiments indicated limited antiproliferative effects up to 100 µM across the tested lines. The compounds demonstrated weak antiproliferative effects in SK-MEL-3 and Hs-294T up to 100 µM. Conclusions: Our results show that the introduction of a boronic acid moiety is an alternative to carboxylic acid derivatives, improving the inhibitory activity of boron analogs (by fourfold) against fungal tyrosinase. Full article
(This article belongs to the Special Issue Recent Advances in Inhibitors for Targeted Therapies)
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18 pages, 1057 KB  
Review
The Role of microRNAs and Cell-Free DNAs in Fungal Infections: Systematic Review and Meta-Analysis of the Literature
by Ayse Kalkanci, Fatma Bozdag, Isil Fidan, Ozlem Guzel Tunccan, Sultan Pinar Cetintepe and Mustafa Necmi Ilhan
J. Fungi 2025, 11(10), 718; https://doi.org/10.3390/jof11100718 (registering DOI) - 4 Oct 2025
Abstract
Background: Invasive fungal infections (IFIs) remain a major cause of morbidity and mortality among immunocompromised patients, despite advances in antifungal therapy. Conventional diagnostics are limited, highlighting the need for novel biomarkers. Circulating microRNAs (miRNAs) and cell-free DNA (cfDNA) have emerged as promising tools [...] Read more.
Background: Invasive fungal infections (IFIs) remain a major cause of morbidity and mortality among immunocompromised patients, despite advances in antifungal therapy. Conventional diagnostics are limited, highlighting the need for novel biomarkers. Circulating microRNAs (miRNAs) and cell-free DNA (cfDNA) have emerged as promising tools due to their roles in immune regulation, pathogen–host interactions, and disease monitoring. This systematic review and meta-analysis evaluate their diagnostic and prognostic potential in fungal infections. Methods: A systematic search of PubMed, Web of Science, SCOPUS, and EMBASE was conducted up to May 2025 in line with PRISMA guidelines (PROSPERO protocol CRD42021287150). Eligible studies included clinical research on confirmed fungal infections assessing cfDNA or miRNAs. Random-effects meta-analyses were performed for cfDNA, and miRNA findings were synthesized descriptively. Results: In total, 526 studies were included. cfDNA positivity was observed in 12% of all tested samples (95% CI: 0.06–0.22) and in 79% of patients with proven fungal infections (95% CI: 0.62–0.90), supporting its value as a minimally invasive, culture-independent diagnostic marker. Six studies on miRNAs identified disease-specific signatures, including miR-132 and miRNA panels for aspergillosis, with high diagnostic accuracy (AUC ≥ 0.98). miR-146a, miR-223, and miR-545 further correlated with prognosis and mortality. Conclusions: cfDNA and miRNAs show strong potential for early diagnosis, prognosis, and treatment monitoring in IFIs. Standardized methodologies and large-scale validation are essential for clinical translation. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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21 pages, 5333 KB  
Article
Leaf Blight in Ilex verticillata Caused by Alternaria alternata: Mechanisms of Antioxidant Defense, Phytohormone Crosstalk, and Oxidative Stress Responses
by Huijie Lu, Caixia Zhou, Peiwen Cheng, Liangye Huang, Qinyuan Shen, Ye Zheng, Yihui Li, Wenjun Dai, Jianhong Zhang, Dengfeng Shen, Anket Sharma, Muhammad Junaid Rao, Bingsong Zheng and Huwei Yuan
Plants 2025, 14(19), 3057; https://doi.org/10.3390/plants14193057 - 3 Oct 2025
Abstract
Ilex verticillata (winterberry) is a valuable ornamental shrub increasingly threatened by leaf blight, a disease that compromises its aesthetic and economic value. While fungal pathogens like Alternaria alternata are known to cause leaf blight in horticultural crops, their role in I. verticillata and [...] Read more.
Ilex verticillata (winterberry) is a valuable ornamental shrub increasingly threatened by leaf blight, a disease that compromises its aesthetic and economic value. While fungal pathogens like Alternaria alternata are known to cause leaf blight in horticultural crops, their role in I. verticillata and the host’s defense mechanisms have not been fully characterized. Our study investigated the pathogen-host interaction by identifying the causal agent and examining the physiological and molecular defense mechanisms of I. verticillata. Through morphological and multi-locus molecular analyses (ITS, TEF1-α, G3PDH, RPB2), A. alternata was confirmed as the primary pathogen, fulfilling Koch’s postulates. Pathogenicity assays revealed distinct disease progression stages, from necrotic lesions to tissue degradation. Transcriptomic profiling uncovered dynamic host responses, with early upregulation of pattern recognition receptors (PRRs) and transcripts encoding antioxidant enzymes (SOD, CAT), followed by downregulation of metabolic pathway genes. Phytohormone analysis highlighted intricate crosstalk, with salicylic acid (SA) peaking during mid-infection and jasmonic acid (JA) rebounding later, reflecting a coordinated defense strategy. Additionally, the oxidative stress marker malondialdehyde (MDA), an indicator of membrane lipid peroxidation, surged early, indicating membrane damage, while sustained induction of antioxidant enzymes suggested adaptive responses. The key finding was distinct phytohormone crosstalk, characterized by a mid-infection SA peak followed by a late JA rebound, alongside an early oxidative burst marked by MDA accumulation and sustained antioxidant enzyme activity. These findings provide a framework for understanding I. verticillata’s defense mechanisms and offer insights for developing targeted disease management strategies, such as resistant cultivar breeding or hormone-mediated interventions. Full article
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16 pages, 1782 KB  
Article
Fungal Functional Level to Describe Soil Fungal Composition at Mediterranean Vineyards
by Yasmin Piñuela, María Hernández, Iván Escudero, Peter Sisseck and Jaime Olaizola
Microbiol. Res. 2025, 16(10), 217; https://doi.org/10.3390/microbiolres16100217 - 2 Oct 2025
Abstract
Understanding the soil fungal community in vineyards sheds light on the interactions between plants and their associated microorganisms. For example, identifying arbuscular mycorrhizal fungi (AMF), which are beneficial to grapevine growth, is a good indicator of soil health. In contrast, other fungi, such [...] Read more.
Understanding the soil fungal community in vineyards sheds light on the interactions between plants and their associated microorganisms. For example, identifying arbuscular mycorrhizal fungi (AMF), which are beneficial to grapevine growth, is a good indicator of soil health. In contrast, other fungi, such as the pathogen group, can be detrimental to vine growth. The present study aimed to characterize the soil fungal community and the fungal diversity present at six Mediterranean vineyards located in Burgos (Spain), delving into fungal functional guilds and focusing on AMF and pathogenic fungal groups. The fungal structure was investigated using DNA metabarcoding in three soil samples taken from each vineyard, and differences in the abundance of functional guilds were assessed. Similar soil fungal community structures were observed among soil sample repetitions within vineyards. In contrast, adjacent vineyards presented differences in their microbial composition. Saprophytes followed by pathogens were the dominant fungal functional guilds across all vineyards. However, no differences in the relative abundance of the different fungal functional groups were observed among sites. The vineyard with the highest relative abundance of AMF (0.5%) also had the lowest pathogen relative abundance from all the sites (29.76%). Also, sites presenting a high relative abundance of pathogens in soil (>35%) had a low relative abundance of AMF (<0.05%). Our results suggest that the fungal community is affected by the intrinsic properties of the soil and the characteristics of each vineyard’s microsite over the effect of the geographical proximity. In addition, to improve our understanding of the soil microbial ecology, we highlight the necessity of prospecting soil fungal analyses into functional groups, interpreting diversity results within taxonomic groups alongside the total abundance of target groups/species. Full article
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17 pages, 3368 KB  
Article
Effects of Different Land-Use Types on Soil Properties and Microbial Communities in a Southeastern Tibetan Valley
by Ximei Zhao, Wenyan He, Fengyun Xiang, Jianqiang Zhu and Jifu Li
Agronomy 2025, 15(10), 2317; https://doi.org/10.3390/agronomy15102317 - 30 Sep 2025
Abstract
Land-use type is a key factor influencing soil properties, microbial community composition, and plant nutrient status. In this study, five land-use types (Tibetan barley, rapeseed, walnut, wheat, and weeds) were investigated in a river valley of southeastern Tibet to compare their effects on [...] Read more.
Land-use type is a key factor influencing soil properties, microbial community composition, and plant nutrient status. In this study, five land-use types (Tibetan barley, rapeseed, walnut, wheat, and weeds) were investigated in a river valley of southeastern Tibet to compare their effects on soil chemical characteristics, microbial communities, and plant nutrients. Soils under walnut trees had significantly higher available phosphorus and microbial biomass phosphorus but lower soil organic matter. Rapeseed fields had higher levels of available potassium and were dominated by the fungal genus Tausonia; rapeseed leaves also contained the highest nitrogen and potassium concentrations. Weed plots supported a distinct fungal community dominated by Helvella. Tibetan barley and wheat increased overall bacterial and fungal diversity, with wheat soils with the highest microbial biomass carbon and nitrogen. Redundancy analysis indicated that soil total nitrogen, available nitrogen, and organic matter were the main drivers of plant nutrient variation, together explaining 93.5% of the total variance. These findings demonstrate how land-use type regulates soil–microbe–plant interactions in alpine valleys and provide empirical references for agricultural management and soil improvement on the Qinghai–Tibet Plateau. Full article
(This article belongs to the Section Agricultural Biosystem and Biological Engineering)
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11 pages, 1279 KB  
Article
Horizontally Transferred Carotenoid Genes Associated with Light-Driven ATP Synthesis to Promote Cold Adaptation in Pea Aphid, Acyrthosiphon pisum
by Jin Miao, Huiling Li, Yun Duan, Zhongjun Gong, Xiaoling Tan, Ruijie Lu, Muhammad Bilal and Yuqing Wu
Insects 2025, 16(10), 1013; https://doi.org/10.3390/insects16101013 - 30 Sep 2025
Abstract
The pea aphid, Acyrthosiphon pisum, possesses horizontally acquired fungal carotenoid biosynthesis genes, enabling de novo production of carotenoids. Although carotenoids are known to contribute to photo-protection and coloration, their potential role in energy metabolism and population fitness under thermal stress is still [...] Read more.
The pea aphid, Acyrthosiphon pisum, possesses horizontally acquired fungal carotenoid biosynthesis genes, enabling de novo production of carotenoids. Although carotenoids are known to contribute to photo-protection and coloration, their potential role in energy metabolism and population fitness under thermal stress is still unclear. This study investigated the interactive effects of temperature and light intensity on energy homeostasis and life-history traits in A. pisum. Using controlled environmental regimes, we demonstrate that light intensity significantly influenced the ATP content, development, and reproductive output of A. pisum at 12 °C, but not at 22 °C. Under cold stress (12 °C), high light intensity (5000 lux) increased ATP content by 240%, shortened the pre-reproductive period by 46%, extended reproductive duration by 62%, and enhanced the net reproductive rate (R0) and intrinsic rate of increase (rₘ) compared to low light intensity (200 lux). These effects were abolished at the optimal temperature (22 °C), indicating a temperature-gated, light-dependent mechanism. Demographic analyses revealed that carotenoid-associated solar energy harvesting significantly improves fitness under cold conditions, likely compensating for metabolic depression. Our findings reveal a novel ecological adaptation in aphids, where horizontally transferred genes may enable light-driven energy supplementation during thermal stress. This study provides new insights into the physiological mechanisms underlying insect resilience to climate variability and highlights the importance of light as a key environmental factor in shaping life-history strategies in temperate agroecosystems. Full article
(This article belongs to the Section Insect Physiology, Reproduction and Development)
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15 pages, 3145 KB  
Article
ABA and Ethylene Mediates Tomato Root Development Modulation During Endophytic Fungal Interaction
by Maria Feka, Bilge Chousein, Olga Tsiouri and Kalliope K. Papadopoulou
J. Fungi 2025, 11(10), 707; https://doi.org/10.3390/jof11100707 - 30 Sep 2025
Abstract
The early stages of plant–microbe interaction are critical for establishing beneficial symbioses. We investigated how the endophytic fungus Fusarium solani strain FsK modulates tomato (Solanum lycopersicum) development and hormone pathways during in vitro co-cultivation. Seedlings were sampled at three early interaction [...] Read more.
The early stages of plant–microbe interaction are critical for establishing beneficial symbioses. We investigated how the endophytic fungus Fusarium solani strain FsK modulates tomato (Solanum lycopersicum) development and hormone pathways during in vitro co-cultivation. Seedlings were sampled at three early interaction stages (pre-contact, T1; initial contact, T2, 3 days post-contact, T3). Root traits and root and leaf transcripts for abscisic acid (ABA) and ethylene (ET) pathways were quantified, alongside fungal ET-biosynthesis genes. FsK altered root system architecture, increasing root area, lateral root number, root-hair length, and fresh biomass. These morphological changes coincided with tissue- and time-specific shifts. In leaves, FsK broadly affected ABA biosynthetic and homeostasis genes (ZEP1, NCED1, ABA2, AAO1, ABA-GT, BG1), indicating reduced de novo synthesis with enhanced deconjugation of stored ABA. ET biosynthesis was curtailed in leaves via down-regulation of ACC oxidase (ACO1–3), with isoform-specific changes in ACC synthase (ACS). The ET receptor ETR1 was transiently expressed early (T1–T2). FsK itself showed staged activation of fungal ET-biosynthesis genes. These results reveal coordinated fungal–plant hormone control at the transcriptional level that promotes root development during early interaction and support FsK’s potential as a biostimulant. Full article
(This article belongs to the Special Issue Plant Symbiotic Fungi)
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16 pages, 1912 KB  
Article
Some Like It Rock ‘N’ Cold: Speleomycology of Ravništarka Cave (Serbia)
by Miloš Stupar, Željko Savković, Marija Pećić, Dragana Jerinkić, Olga Jakovljević and Slađana Popović
J. Fungi 2025, 11(10), 706; https://doi.org/10.3390/jof11100706 - 29 Sep 2025
Abstract
Caves and other subterranean ecosystems are characterized by stable, low temperatures, high humidity, and limited nutrient input, creating unique environments for extremophilic microorganisms. Among them, fungi play key roles in organic matter degradation, mineral interactions, and biogeochemical cycling, yet the diversity and adaptations [...] Read more.
Caves and other subterranean ecosystems are characterized by stable, low temperatures, high humidity, and limited nutrient input, creating unique environments for extremophilic microorganisms. Among them, fungi play key roles in organic matter degradation, mineral interactions, and biogeochemical cycling, yet the diversity and adaptations of cold-adapted fungi in cave habitats remain insufficiently explored. This study investigated psychrophilic and psychrotolerant fungi inhabiting the stone surfaces of Ravništarka Cave in Eastern Serbia. Biofilm samples were collected from nine sites and analyzed using culture-based isolation on both nutrient-rich and diluted media, followed by incubation at 10 °C, 25 °C, and 37 °C. Fungal identification combined morphological characteristics with molecular analyses of the ITS region and BenA gene, while ecological roles were assigned using FUNGuild. A total of 41 fungal species were documented, spanning Ascomycota (53.1%), Basidiomycota (43.7%), and Mortierellomycota (3.1%) phyla. The genus Penicillium exhibited the greatest species richness, with 14 taxa documented, including P. chrysogenum, P. glandicola, and P. solitum, all previously associated with cold or oligotrophic environments. The psychrotolerant species Mortierella alpina was the only representative of Mortierellomycota. Ecological guild assignment revealed fungi functioning at different trophic levels, highlighting their multifunctional ecological roles in extreme subterranean habitats. Full article
(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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15 pages, 2082 KB  
Article
Comparative Transcriptomics Unveils Pathogen-Specific mTOR Pathway Modulation in Monochamus alternatus Infected with Entomopathogenic Fungi
by Haoran Guan, Jinghong He, Chuanyu Zhang, Ruiyang Shan, Haoyuan Chen, Tong Wu, Qin Sun, Liqiong Zeng, Fangfang Zhan, Yu Fang, Gaoping Qu, Chentao Lin, Shouping Cai and Jun Su
Insects 2025, 16(10), 1006; https://doi.org/10.3390/insects16101006 - 28 Sep 2025
Abstract
Pine wilt disease (PWD), transmitted by Monochamus alternatus (JPS), poses a severe threat to global pine forests. Although the entomopathogenic fungi Beauveria bassiana (Bb) and Metarhizium anisopliae (Ma) represent environmentally friendly biocontrol alternatives, their practical application is limited by inconsistent field performance and [...] Read more.
Pine wilt disease (PWD), transmitted by Monochamus alternatus (JPS), poses a severe threat to global pine forests. Although the entomopathogenic fungi Beauveria bassiana (Bb) and Metarhizium anisopliae (Ma) represent environmentally friendly biocontrol alternatives, their practical application is limited by inconsistent field performance and an incomplete understanding of host–pathogen interactions. We employed dual RNA-seq at the critical 48 h infection time point to systematically compare the transcriptional responses between JPS and Bb/Ma during infection. Key findings revealed distinct infection strategies: Bb preferentially induced autophagy pathways and modulated host carbohydrate metabolism to facilitate nutrient acquisition, triggering corresponding tissue degradation responses in JPS. In contrast, Ma primarily co-opted host amino acid and sugar metabolic pathways for biosynthetic processes, eliciting a stronger immune defense activation in JPS. Notably, the mTOR signaling pathway was identified as a key regulator of the differential host responses to various entomopathogenic fungi. Further functional validation-specifically, the application of a chemical inhibitor and RNAi targeting mTOR in JPS-confirmed that mTOR inhibition selectively enhanced Bb-induced mortality in JPS without affecting Ma virulence. Our findings reveal the molecular determinants of host–pathogen specificity in PWD biological control and indicate that mTOR regulation could serve as an effective strategy to improve fungal pesticide performance. Full article
(This article belongs to the Special Issue Insect Transcriptomics)
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23 pages, 748 KB  
Review
Polyamine Induction of Secondary Metabolite Biosynthetic Genes in Fungi Is Mediated by Global Regulator LaeA and α-NAC Transcriptional Coactivator: Connection to Epigenetic Modification of Histones
by Juan F. Martín
Molecules 2025, 30(19), 3903; https://doi.org/10.3390/molecules30193903 - 27 Sep 2025
Abstract
Polyamines are polycationic compounds present in all living cells that exert functions at different levels in the metabolism. They bind to DNA and RNA and modulate DNA replication and gene expression. Some of these regulatory effects are exerted by promoting condensation of nucleosomes, [...] Read more.
Polyamines are polycationic compounds present in all living cells that exert functions at different levels in the metabolism. They bind to DNA and RNA and modulate DNA replication and gene expression. Some of these regulatory effects are exerted by promoting condensation of nucleosomes, a mechanism closely connected with epigenetic modification by histone methylation and acetylation. The polyamines 1,3-diaminopropane and spermidine induce expression of the global regulator LaeA and increase by several folds the formation of the α-NAC transcriptional co-activator, a subunit of the nascent polypeptide-associated complex. The global regulator LaeA controls the switch from primary growth to secondary metabolite production and differentiation when an essential nutrient in the growth medium becomes limiting. α-NAC exerts significant control over the biosynthesis of secondary metabolites and fungal pathogenicity on plants. When purified α-NAC protein is added to a tomato host plant, it induces plant resistance to fungal infections and triggers the development of system-acquired resistance in other plants. Spermidine extends the life of yeast cells and prolongs the half-life of penicillin gene transcripts in Penicillium chrysogenum. This article discusses advances in the basis of understanding the mechanism of plant–fungi interaction and the effect of small fungal metabolites and epigenetic modifiers in this interaction. Full article
(This article belongs to the Special Issue Natural Products Biosynthesis: Present and Perspectives)
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18 pages, 23288 KB  
Article
Ginseng Polysaccharides Inhibit Aspergillus sydowii-Driven Lung Adenocarcinoma via Modulating Gut Microbiota–Bile Acid Metabolism Axis
by Jinlian He, Xiao Shu, Hudan Pan, Mingming Wang, Yuanyuan Song, Feng Zhou, Lirong Lian, Liqing Chen, Gangyuan Ma, Yicheng Zhao, Runze Li and Liang Liu
Cancers 2025, 17(19), 3134; https://doi.org/10.3390/cancers17193134 - 26 Sep 2025
Abstract
Background: Lung cancer is the leading cause of cancer-related mortality globally, with lung adenocarcinoma (LUAD) as the most common subtype. Dysbiotic intratumoral mycobiomes drive LUAD pathogenesis, and Aspergillus sydowii (A. sydowii) acts as a key oncogenic fungal species. Ginseng polysaccharides (GPs), [...] Read more.
Background: Lung cancer is the leading cause of cancer-related mortality globally, with lung adenocarcinoma (LUAD) as the most common subtype. Dysbiotic intratumoral mycobiomes drive LUAD pathogenesis, and Aspergillus sydowii (A. sydowii) acts as a key oncogenic fungal species. Ginseng polysaccharides (GPs), bioactive phytochemicals with immunomodulatory and oncostatic properties, counteract fungal infections and restore immunosurveillance in LUAD. Methods: Subcutaneous and orthotopic LUAD murine models were established by implanting Lewis lung carcinoma (LLC) cells. Subcutaneous tumors were infected intratumorally and orthotopic models via nasal inoculation. GPs (200 mg/kg/day) were orally administered to evaluate tumor growth. Metagenomic and targeted bile acid metabolomic profiling of fecal and tumor tissues was performed, with Spearman correlations analyzed using R packages. Results: GPs significantly inhibited A. sydowii-induced tumor growth in both models. In subcutaneous tumors; GPs reduced volume (p < 0.05) and weight vs. infected controls. In orthotopic models, GPs decreased pathological nodules and lung weight, with micro-CT/H&E confirming attenuated hyperplasia. Metagenomics showed GPs restored gut homeostasis by enriching Lactobacillus/Muribaculum intestinale and suppressing pro-inflammatory Alistipes. Targeted metabolomics revealed reduced β-Hyodeoxycholic Acid (3β-HDCA), Chenodeoxycholic acid 24-acyl-b-D-glucuronide (CDCA-24G) and 3β-hydroxychol-5-en-24-oic acid (5-isoLCA) after GP treatment. Network analysis confirmed significant microbe–bile acid interactions. Conclusions: GPs exert antitumor effects against A. sydowii-induced LUAD by modulating gut microbiota and bile acid metabolism. This identifies GPs as a promising therapy for mycobiome-influenced cancers, with dual targeting of fungal infection and metabolic reprogramming. Full article
(This article belongs to the Topic Advances in Anti-Cancer Drugs: 2nd Edition)
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22 pages, 9257 KB  
Article
A Dual Regulatory Mechanism of Hormone Signaling and Fungal Community Structure Underpin Dendrobine Accumulation in Dendrobium nobile
by Yongxia Zhao, Nian Xiong, Xiaolong Ji, Dongliang Zhang, Qi Jia, Lin Qin, Xingdong Wu, Daopeng Tan, Jian Xie and Yuqi He
Biomolecules 2025, 15(10), 1366; https://doi.org/10.3390/biom15101366 - 26 Sep 2025
Abstract
(1) Objective: The biosynthesis of medicinal secondary metabolites in Dendrobium nobile Lindl. is regulated by complex environmental, hormonal, and microbial interactions. However, the mechanisms by which subtle variations in plant elevation shape metabolite accumulation through plant–microbe–hormone networks remain largely unexplored. (2) Methods: We [...] Read more.
(1) Objective: The biosynthesis of medicinal secondary metabolites in Dendrobium nobile Lindl. is regulated by complex environmental, hormonal, and microbial interactions. However, the mechanisms by which subtle variations in plant elevation shape metabolite accumulation through plant–microbe–hormone networks remain largely unexplored. (2) Methods: We conducted a multi-omics investigation of D. nobile cultivated under simulated wild conditions at four elevation gradients (347–730 m) in Chishui, China. High-throughput transcriptome sequencing and ITS-based fungal community profiling were combined with hormone quantification and functional prediction (FUNGuild), enabling integrated analysis of hormone pathway activation, microbial structure–function dynamics, and dendrobine levels. (3) Reults: This study systematically investigated D. nobile cultivated under simulated wild conditions across four elevation gradients (347–730 m) in the Danxia region of Chishui, China. We identified a dual regulatory mechanism underlying the elevation-dependent accumulation of dendrobine alkaloids, involving both plant hormone signaling and endophytic fungal communities. Transcriptomic analyses revealed coordinated upregulation of key hormone pathway genes, including DELLA, PYR/PYL, SnRK2, COI1-JAZ-MYC2, and NPR1-TGA, particularly in CY01Y samples at 670 m elevation from ChiYan base in Chishui city, which corresponded to the highest dendrobine content. Concurrently, functional prediction of the ITS-based fungal sequencing data revealed that CY01Y harbored a stable, functionally enriched fungal community dominated by saprotrophs, fungal parasites, and plant pathogens. (4) Conclusions: Through integrative hormone profiling, gene expression, and microbial function analysis, we propose that elevation-induced environmental cues reshape hormone pathways both directly and indirectly via microbial feedback. Specific microbial taxa were identified as potential modulators of hormone signaling and secondary metabolism. The coordinated interaction between plant hormones and endophytic fungi supports a hormone–microbiome–metabolite network that dynamically regulates dendrobine biosynthesis in response to micro-elevation variation. Full article
(This article belongs to the Section Biological Factors)
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19 pages, 3838 KB  
Article
Synthesis of the Supramolecular Structure of Vanadium Pentoxide Nanoparticles with Native and Modified β-Cyclodextrins for Antimicrobial Performance
by Rajaram Rajamohan, Kanagaraj Thamaraiselvi, Chaitany Jayprakash Raorane, Kuppusamy Murugavel, Chandramohan Govindasamy, Seong-Cheol Kim and Seho Sun
Bioengineering 2025, 12(10), 1010; https://doi.org/10.3390/bioengineering12101010 - 23 Sep 2025
Viewed by 137
Abstract
Cyclodextrins in metal oxide nanoparticles (NPs) serve as stabilizing, dispersing, and functionalizing agents that enhance antimicrobial performance through better nanoparticle stability, synergistic action, and potential controlled release mechanisms, making them ideal for advanced biomedical and environmental antimicrobial applications. In this study, NPs of [...] Read more.
Cyclodextrins in metal oxide nanoparticles (NPs) serve as stabilizing, dispersing, and functionalizing agents that enhance antimicrobial performance through better nanoparticle stability, synergistic action, and potential controlled release mechanisms, making them ideal for advanced biomedical and environmental antimicrobial applications. In this study, NPs of vanadium pentoxide (V2O5) were obtained by the precipitation method, and, following a supramolecular assembly, were synthesized using the impregnation method via addition of β-cyclodextrin (BCD) and its derivatives, such as hydroxypropyl-β-cyclodextrin (HCD) and methyl-β-cyclodextrin (MCD). The formation of the V2O5:CDs was driven by non-covalent host–guest interactions, leading to a stable supramolecular structure with enhanced physicochemical properties. Morphological analysis using scanning electron microscopy (SEM) revealed uniformly distributed V2O5 NPs within the CD matrix. Structural characterization was further supported by proton nuclear magnetic resonance (NMR) spectroscopy, which confirmed the inclusion interactions between V2O5 and CDs. The synthesized NPs demonstrated significant antimicrobial activity against Gram-positive and fungal strains, indicating a synergistic enhancement in bioactivity due to the supramolecular architecture. This work highlights the potential of CD-assisted V2O5 NPs as promising antimicrobial agents for biomedical and environmental applications. Full article
(This article belongs to the Section Biomedical Engineering and Biomaterials)
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19 pages, 3460 KB  
Article
The Reorganization of Rice Rhizosphere Microbial Communities Driven by Nitrogen Utilization Efficiency and the Regulatory Mechanism of Soil Nitrogen Cycling
by Zhuang Xiong, Qiang Li, Rongtao Fu, Jian Wang, Daihua Lu and Cheng Chen
Microorganisms 2025, 13(9), 2215; https://doi.org/10.3390/microorganisms13092215 - 22 Sep 2025
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Abstract
Nitrogen use efficiency (NUE) in rice cultivation is a key determinant of sustainable agriculture, yet the interaction between NUE and the dynamics of rhizosphere soil microbial communities remain poorly understood. In this study, the changes in rhizosphere soil microbial community composition and function [...] Read more.
Nitrogen use efficiency (NUE) in rice cultivation is a key determinant of sustainable agriculture, yet the interaction between NUE and the dynamics of rhizosphere soil microbial communities remain poorly understood. In this study, the changes in rhizosphere soil microbial community composition and function due to NUE were analyzed in six rice genotypes across six treatments. Through 16S rRNA/ITS amplicon sequencing, it was found that rice with different NUEs reshaped the rhizosphere soil microbial community structure, but did not significantly alter the α-diversity of the bacterial community. There was a notable difference in the average abundance of the fungus Arnium in the rhizosphere soil of high-NUE rice compared to low-NUE rice, with a 222.2% increase in the former. Correlation analysis indicated that in high-NUE rice, soil nitrate and nitrite contents drove changes in the fungal community, while in low-NUE rice, soil water-soluble nitrogen and total potassium contents were the key influencing factors for changes in the fungal and nitrogen-fixing bacterial communities, respectively. The findings of this study demonstrate a link between NUE-induced changes in the rhizosphere soil microbiome and nitrogen cycling in rice, providing a basis for targeted nitrogen fertilizer management approaches guided by microbial control. Full article
(This article belongs to the Section Plant Microbe Interactions)
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16 pages, 4760 KB  
Article
The Stone Moroko Pseudorasbora parva Altered the Composition and Stability of Sediment Microbial Communities Within the Chinese Mitten Crab (Eriocheir sinensis) Polyculture Pond
by Yiran Hou, Yun Bao, Rui Jia, Linjun Zhou, Lili Song, Baojuan Yang, Bing Li and Jian Zhu
Biology 2025, 14(9), 1297; https://doi.org/10.3390/biology14091297 - 19 Sep 2025
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Abstract
Integrated aquaculture, centered around polyculture involving multiple species, is a typical practice for the sustainable development of the aquaculture industry, capable of enhancing resource utilization efficiency, environmental stability, and overall productivity through establishing symbiotic interactions among species. This study employed multi-amplicon high-throughput sequencing [...] Read more.
Integrated aquaculture, centered around polyculture involving multiple species, is a typical practice for the sustainable development of the aquaculture industry, capable of enhancing resource utilization efficiency, environmental stability, and overall productivity through establishing symbiotic interactions among species. This study employed multi-amplicon high-throughput sequencing to assess the ecological impacts of two polyculture methods involving river crabs on sediment bacteria, fungi, and protists. One method involved polyculturing river crabs with mandarin fish, silver carp, and the stone moroko (SPC), and the other involved polyculturing river crabs with only mandarin fish and silver carp (SMC). The results showed that, compared to the SMC group, the SPC group remarkably increased the Chao1 index of bacterial communities in pond sediment and decreased the Pielou_J index of protists. The relative abundances of all fungal phyla and most dominant bacterial and protistan phyla (top 10 in relative abundance) in the SPC group were considerably different from those in the SMC group. In the co-occurrence networks of bacterial, fungal, and protistan communities, the numbers of edges and nodes were higher in the SPC group than in the SMC group, and the habitat niche breadth of bacterial community was also notably increased in the SPC group. The levels of total carbon (TC), total nitrogen (TN), and phosphates within pond sediment in the SPC group were obviously lower than those in the SMC group, and were significantly correlated with the microbial communities, with TC being identified as the primary contributor driving changes in the microbial communities. All the findings collectively demonstrate that the polyculture of river crabs with mandarin fish, silver carp, and the stone moroko enhances the stability of bacterial, fungal, and protistan communities in sediment and enhances resource utilization efficiency in aquaculture, thereby preventing the environmental risks associated with excessive nutrient accumulation in sediment. Polyculture systems integrating river crabs with mandarin fish, silver carp, and the stone moroko represent a sustainable aquaculture model with significant ecological benefits. Full article
(This article belongs to the Special Issue Biodiversity, Conservation, and Application of Crustaceans)
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