Search Results (1,691)

Seed germination performance and storability are fundamental components of seed quality and critical for successful crop establishment. However, information on the impact of different crop production systems on the quality and storability of seed material is still limited. Therefore, the aim of this study was to compare the effects of different crop production systems (ecological, integrated, conventional, and monoculture) on seed germination and predisposition for storage. The research was carried out on four varieties of winter wheat. Seed material was produced within a two-year period, during which different weather conditions occurred. Four germination-related traits were assessed: germination capacity NS (%), total germination (TG%), time to reach 50% germination (t50) and the area under the germination curve (AUC). The results demonstrated that the cultivar, the cultivation system and the year of study had a significant impact on germination characteristics. The ecological system ensured the highest germination rate in fresh seeds. However, in the CD test, the conventional system demonstrated the highest levels of stress resistance and stability, suggesting the best storage potential. The significant system × variety interaction demonstrates the importance of accurate matching of the genotype to the growing conditions to ensure optimal seed quality. Furthermore, the data demonstrated a strong influence of climatic conditions in the year of production, which is crucial for seed vigor. Full article

Improving wheat processing quality is a crucial objective in modern wheat breeding. Among various quality parameters, grain protein content (GPC) and wet gluten content (WGC) significantly influence the end-use quality of flour. These traits are controlled by multiple minor effect genes and highly influenced by environmental factors. Identifying stable and major-effect genetic loci and developing breeder-friendly molecular markers are of great significance for breeding high-quality wheat varieties. In this study, we evaluated the GPC and WGC of 310 diverse wheat varieties, mainly from China and Europe, across four environments. Genotyping was performed using the wheat 100K SNP chip, and genome-wide association analysis (GWAS) was employed to identify stable loci with substantial effects. In total, four loci for GPC were identified on chromosomes 1A, 3A, 3B, and 4B, with explained phenotypic variation (PVE) ranging from 6.0 to 8.4%. In addition, three loci for WGC were identified on chromosomes 4B, 5A, and 5D, which explained 7.0–10.0% of the PVE. Among these, three loci coincided with known genes or quantitative trait loci (QTL), whereas QGPC.zaas-3AL, QGPC.zaas-4BL, QWGC.zaas-4BL, and QWGC.zaas-5A were potentially novel. Seven candidate genes were involved in various biological pathways, including growth, development, and signal transduction. Furthermore, five kompetitive allele specific PCR (KASP) markers were developed and validated in a natural population. The newly identified loci and validated KASP markers can be utilized for quality improvement. This research provides valuable germplasm, novel loci, and validated markers for high-quality wheat breeding. Full article

Tomato (Solanum lycopersicum L.) is an important horticultural crop. Carotenoid cyclase dioxygenase (CCD) is an enzyme responsible for cleaving carotenoids, which is involved in regulating plant growth and response to abiotic stresses. However, the role of SlCCDs in tomato stress resistance remains unclear. This study used the tomato variety ‘Micro-Tom’ as the material to investigate the function of SlCCDs in stress responses. Through whole-genome analysis, a total of 12 SlCCDs members (SlCCD1–SlCCD12) were identified. Systematic evolutionary analysis classified them into four branches, and members within the same branch maintained a conserved structure. The promoter analysis revealed that SlCCDs contain multiple hormones and stress response elements. The qRT-PCR analysis revealed that SlCCD11 was the most highly expressed gene in the leaves. In addition, multiple SlCCDs showed significant responses to abscisic acid (ABA), methyl jasmonate (MeJA), light, and sodium chloride (NaCl) treatments. Among them, the expression of SlCCD11 significantly increased under salt stress. By silencing SlCCD11 using virus-induced gene silencing (VIGS) technology, it was found that the chlorophyll content, antioxidant enzyme activity, and ABA-related gene expression in the TRV:SlCCD11 plants under salt stress were all lower than the control samples, while the carotenoid content and ROS accumulation were higher. This indicates that SlCCD11 is a positive regulatory factor for salt stress. In conclusion, this study systematically analyzed the SlCCD gene family and revealed the positive role of SlCCD11 in tomato response to salt stress, providing a candidate gene for genetic improvement of crop stress resistance. Full article

Rice is a key food crop worldwide, but its yield and quality are severely constrained by insect pests. As environmental and regulatory restrictions on chemical pesticides grow, developing insect-resistant rice varieties has become a sustainable way to protect food security. This review covers recent progress in functional genomics and molecular marker mapping related to insect resistance in rice. We highlight the identification, cloning, and functional analysis of resistance genes targeting major pests, including the brown planthopper, rice gall midge, white-backed planthopper, small brown planthopper, and rice leaf roller. Several important resistance genes (such as Bph14, Bph3, and Bph29) have been cloned, and their roles in rice immunity have been clarified—covering insect feeding signal recognition, activation of salicylic acid and jasmonic acid pathways, and regulation of MAPK cascades, calcium signaling, and reactive oxygen species production. We also discuss how molecular marker-assisted selection, gene pyramiding, and transgenic techniques are used in modern rice breeding. Finally, we address future challenges and opportunities, stressing the importance of utilizing wild rice germplasm, understanding insect effector–plant immune interactions, and applying molecular design breeding to create long-lasting insect-resistant rice varieties that can withstand changing pest pressures and climate conditions. Full article

Potato (Solanum tuberosum L.) is one of the most widely cultivated crops in the world; however, drought is a major constraint to its productivity. Arbuscular mycorrhizal fungi (AMF) have been shown to improve plant resistance under conditions of water stress. However, their effects on potato plants are poorly studied. The purpose of this study was to evaluate the potential of two AMF inocula (two different strains of the AMF species Rhizophagus irregularis with different origin: Southern Spain MI₁ and Tunisia MI₂) on potato tolerance to drought stress through the determination of growth parameters, photosynthetic parameters, and antioxidant systems, under well-watered (WW; field capacity) and drought stress (DS; 50% of field capacity) conditions. Therefore, the experiment consisted of two factors: AMF strain and watering regime. The results showed that under drought stress conditions, AMF inoculation considerably stimulated photosynthetic performance as compared with non-inoculated controls. Moreover, leaf superoxide dismutase (SOD) and catalase (CAT) activities of inoculated plants were higher in WW conditions, but unchanged in DS conditions. Inoculated plants had significantly higher ascorbate peroxidase (APX) and glutathione reductase (GR) activities than non-inoculated plants under DS conditions. Also, expression of some antioxidant enzyme genes were upregulated by inoculation. Lipid peroxidation content of inoculated plants was lower than that of non-inoculated. Furthermore, there was a high positive correlation between mycorrhizal root colonization (RC) and almost all the measured parameters. The results of this study indicated that AMF inoculation could enhance potato plant tolerance to water stress through the induction of antioxidant mechanisms implicated in scavenging oxygen-free radicals. Full article

Drought stress represents a major constraint on global apple production, with the widely used semi-dwarfing rootstock ‘M.26’ being particularly vulnerable to water deficit. Although the osmolyte trimethylamine N-oxide (TMAO) has been shown to improve abiotic stress tolerance in the model plant Arabidopsis, its potential role in enhancing drought resilience in woody fruit trees remains largely unexplored. Under prolonged moderate drought stress, exogenous TMAO application significantly promoted plant growth, mitigating the drought-induced suppression of plant height by 5.3–12.2% compared to untreated drought-stressed controls and alleviating the decline in above-ground biomass. This improvement was underpinned by a substantial alleviation of root growth inhibition, with TMAO restoring total root length and biomass from 37% in the control to only 6.1–9.5%. TMAO also fine-tuned the root-to-shoot ratio to favor resource allocation to roots. Consequently, TMAO-treated plants maintained superior leaf water status, exhibiting higher relative water content (drought-induced reduction limited to ~17.5% with TMAO versus 26.3% in the control). Physiologically, TMAO alleviated the drought-induced stomatal limitation of photosynthesis, sustaining higher net photosynthetic rate, stomatal conductance, and transpiration rate. Crucially, under severe drought stress, TMAO pretreatment markedly enhanced ‘M.26’ survival rates from approximately 39% in the untreated control to 60–68%, representing a relative increase of approximately 74%. Collectively, this study demonstrates that exogenous application TMAO significantly enhances drought tolerance in apple rootstock ‘M.26’, highlighting its potential as an effective and environmentally safe plant growth regulator for more sustainable cultivation of fruit trees under irregular/erratic irrigation conditions. Full article

Sugarcane (Saccharum spp.) is a globally important crop for sugar and bioenergy production. However, genetic improvement through conventional breeding is constrained by long breeding cycles, low genetic gain, and considerable operational complexity arising from its highly allopolyploid and aneuploid genome. With the increasing global demand for sustainable food and renewable energy, sugarcane breeding programs must accelerate the development of high-yielding, stress-tolerant cultivars through the integration of advanced biotechnological tools with traditional breeding approaches. Recent advances in genetic engineering, genomic selection (GS), and high-throughput omics technologies, including genomics, transcriptomics, proteomics, metabolomics, and phenomics, have substantially enhanced the efficiency of trait improvement related to growth, development, yield, and stress resilience. The integration of multi-omics data enables the dissection of regulatory networks linking genotype to phenotype, improves predictive accuracy, and provides deeper insights into the molecular mechanisms underlying complex traits. These integrative approaches support more informed selection decisions and accelerate genetic gain in sugarcane breeding programs. This review synthesizes recent technological developments and their practical applications in sugarcane improvement. It highlights the strategic implementation of transgenic and genome-editing technologies, genomic selection, and multi-omics integration to enhance yield potential and resistance to biotic and abiotic stresses, thereby contributing to sustainable sugarcane production and global food and bioenergy security. Full article

Grapevine (Vitis vinifera L.) is a globally significant crop increasingly affected by a variety of biotic and abiotic stresses. Plant biostimulants offer a promising approach to enhance plant resilience by modulating key physiological and metabolic processes. This study aimed to demonstrate that the preventive application of a Fabaceae-based biostimulant can prime grapevine defense pathways, thereby improving plants’ ability to endure potential stress conditions. Indeed, resistance to both biotic and abiotic stresses in plants involves common pathways, including Ca²⁺ and ROS signaling, MAPK cascades, hormone cross-talk, transcription factor activation, and induction of defense genes. Grapevine leaves were subjected to high-throughput transcriptomic analysis coupled with qPCR validation 6 and 24 h following treatment application. Differentially expressed genes were visualized using MapMan to identify the major metabolic and signaling pathways responsive to the treatment. This integrative analysis revealed several defense-related pathways triggered by the biostimulant, with representative protein families showing both up- and downregulation across key functional categories. Overall, the results indicate that a wider array of pathways associated with stress tolerance and growth regulation were stimulated in treated plants compared to untreated controls. These findings support the conclusion that a preventive biostimulant application can effectively prime grapevine metabolism, enhancing its preparation to cope with forthcoming environmental challenges. Full article

Climate change poses a threat to global rice production by increasing the frequency and intensity of extreme weather events. The widespread cultivation of genetically uniform modern varieties has narrowed the genetic base of rice, increasing its vulnerability to these increased pressures. Rice landraces are traditional rice varieties that have been cultivated by farming communities for centuries and are considered crucial resources of genetic diversity. These landraces are adapted to a wide range of agro-ecological environments and exhibit valuable traits that provide tolerance to various biotic stresses, including drought, salinity, nutrient-deficient soils, and the increasing severity of climate-related temperature extremes. In addition, many landraces possess diverse alleles associated with resistance to biotic stresses, including pests and diseases. In addition, rice landraces exhibit great grain quality characters including high levels of essential amino acids, antioxidants, flavonoids, vitamins, and micronutrients. Hence, their preservation is vital for maintaining agricultural biodiversity and enhancing nutritional security, especially in vulnerable and resource-limited regions. However, rice landraces are increasingly threatened by genetic erosion due to widespread adoption of modern high-yielding varieties, habitat loss, and changing farming practices. This review discusses the roles of rice landraces in developing resilient and climate-smart rice cultivars. Moreover, the Pantiange Heigu landrace, cultivated at one of the highest altitudes globally in Yunnan Province, China, has been used as a case study for integrated conservation by demonstrating the successful combination of in situ and ex situ strategies, community engagement, policy support, and value-added development to sustainably preserve genetic diversity under challenging environmental and socio-economic challenges. Finally, this study explores the importance of employing advanced genomic technologies with supportive policies and economic encouragements to enhance conservation and sustainable development of rice landraces as a strategic imperative for global food security. By preserving and enhancing the utilization of rice landraces, the agricultural community can strengthen the genetic base of rice, improve crop resilience, and contribute substantially to global food security and sustainable agricultural development in the face of environmental and socio-economic challenges. Full article

Delayed sowing has become a key constraint on winter wheat production in the Guanzhong Plain, Shaanxi Province, China, due to the widespread adoption of late-maturing maize and the delayed harvest of preceding crops. A two-year field experiment was conducted on the Guanzhong Plain to elucidate the physiological mechanisms behind yield reduction under delayed sowing and to explore potential mitigation strategies. The study examined the effects of sowing time (normal, 10-day delay, and 20-day delay) and plastic film mulching on yield components, crop development, and water and nitrogen uptake and use in winter wheat. Compared to normal sowing, delayed sowing significantly reduced grain yield (7.64–17.19%), spike number (11.65–21.3%), 1000-grain weight (5.2–9.05%), growth duration (7–16 d), dry matter accumulation (21.79–58.07%), and partial factor productivity of nitrogen fertilizer (7.64–17.2%). Late sowing slowed overall growth and development, shortened the growth cycle, and suppressed root system expansion and plant height, particularly under the 20-day delay. However, plastic film mulching under delayed sowing improved seedling emergence, root growth, tiller number (8.42–51.23%), water use efficiency (10.15–18.15%), and nitrogen productivity, thereby mitigating the adverse effects of delayed sowing on resource capture. Mulching enabled wheat sown with a 10-day delay to achieve yields comparable to normal-sown crops and alleviated 9.1–10.3% of the yield loss under a 20-day delay, although it did not fully restore yields to the non-delayed level. These findings provide practical insights for managing winter wheat under delayed sowing conditions. Full article

The study investigates the use of silver nanoparticles (AgNPs) in agriculture, focusing on their potential to enhance the immune response of potato (Solanum tuberosum L.) plants against phytopathogenic attacks. The research highlights how AgNPs, stabilized by biologically active polymers polyhexamethylene biguanide and tallow amphopolycarboxyglycinate, can induce oxidative stress. Triple foliar application of 0.1–9.0 g/ha silver nanoparticles at the budding and later stages demonstrated significant efficacy in suppressing diseases caused by Phytophthora infestans and Alternaria solani (over 60%). This effect was linked to the increased activity of peroxidase—over 30–50%—and the decreased catalase activity, indicative of a well-coordinated oxidative stress response to the invasion of P. infestans and A. solani. The results suggest that AgNPs in low concentrations can prime the plant’s innate immune system, enhancing its resistance without detrimental effects on growth parameters, thus contributing to the improved crop yield. These findings underscore the potential of AgNPs not as traditional biocides, but as intelligent elicitors of plant-induced resistance, positioning them as next-generation tools for sustainable crop protection and yield optimization, which can be applied at extremely low doses (less than 10 g/ha of active substance). Full article

Circular RNAs (circRNAs) are covalently closed RNA molecules that regulate various biological processes in plants. However, the functions of most identified circRNAs remain unclear. Here, we report a nucleoplasmic-localized circRNA, Vv-circRCD1, derived from exons 2 and 3 of the grape VvRCD1 gene. Overexpression of Vv-circRCD1 significantly shortened primary root length and increased root hair number and length, notably, and improved the salt tolerance in Arabidopsis. Transient overexpression also significantly enhanced salt tolerance of grapevines. In silico analyses confirmed direct sequence complementarity between Vv-circRCD1 and the Vvi-miR399 family, and Vv-circRCD1 and Vvi-miR399 target genes (involved in salt stress responses) showed consistent expression patterns under salt stress, indicating a Vv-circRCD1–Vvi-miR399–target gene regulatory module may mediate salt tolerance. These results not only identified Vv-circRCD1 as a novel regulator of grapevine salt tolerance, but also highlighted its potential in improving crop stress resistance, providing a practical reference for crop breeding. Full article

Rice (Oryza sativa L.) is a major global staple crop, yet its productivity is severely constrained by rice blast disease caused by Magnaporthe oryzae. FK506-binding proteins (FKBPs) are peptidyl-prolyl cis-trans isomerases involved in protein folding, stress response, and signaling regulation, but their roles in rice blast resistance remain unclear. In this study, we performed a comprehensive identification and characterization of FKBP gene family members in two rice cultivars, Nipponbare (NIP) and Zhonghua 11 (ZH11), based on the latest T2T (telomere-to-telomere) genome assembly of ZH11 and the reference genome of NIP. A total of 24 and 29 FKBP genes were detected in NIP and ZH11, respectively, indicating a slight expansion in ZH11. Phylogenetic and collinearity analyses revealed strong conservation of FKBP family members between the two cultivars, while several ZH11-specific genes likely resulted from recent duplication events. Promoter analysis showed that FKBP genes are enriched in stress and hormone responsive cis-elements, particularly those related to ABA, MeJA, and SA signaling. Transcriptomic and RT-qPCR analyses demonstrated that multiple FKBP genes were significantly regulated during M. oryzae infection, suggesting their potential involvement in defense signaling pathways. This study provides a comprehensive overview of FKBP gene family evolution and expression in rice, identifies candidate genes potentially associated with blast resistance, and offers valuable insights for molecular breeding aimed at improving disease resistance in rice. Full article

Potato (Solanum tuberosum L.) is the world’s fourth most important food crop, and despite China producing nearly one quarter of the global yield, its potato production is severely constrained by late blight. Identifying genes associated with pathogenicity is essential for breeding resistant cultivars and strengthening plant protection strategies. Traditional approaches based on differential expression and statistical modeling often fail to capture temporal dynamics or provide interpretable insights. Here, we introduce an LSTM–Transformer hybrid model designed for data-driven discovery of pathogenicity-related genes from gene expression time-series. The analysis was performed on a time-series expression dataset comprising 32,917 genes across 18 samples (three infection time points × six biological replicates per condition). In this study, we identified 200 high-confidence pathogenicity-related genes from potato infection time-series data. These genes are enriched in 15 biologically meaningful pathways, including plant immunity signaling, reactive oxygen species regulation, secondary metabolic processes, and stress-responsive transcriptional programs. Several newly uncovered candidates participate in defense hormone pathways and cell wall modification, suggesting previously unrecognized roles in late blight susceptibility and resistance. By revealing functional groups and regulatory signatures that characterize pathogenicity, this work provides valuable molecular targets for developing late blight-resistant cultivars. The framework integrates a biologically informed temporal–attention architecture, a gene time-series-specific data partitioning strategy, and an interpretable deep analysis module. A final methodological contribution is the use of a temporal attention-based analytical framework that enables reliable gene prioritization from time-series expression data. Full article

Drought, high temperature, salinity, waterlogging, and nutrient deficiency, along with metal toxicity, are among the environmental factors that have resulted in much alteration of many ecosystems by climate change. Such stresses have dramatically lowered the global average human harvest of core crops, which, in turn, has driven an overall decrease in worldwide agricultural productivity. Plants have developed a variety of defense strategies against biotic and abiotic stress. Evidence of the successful roles of phytohormone-like neurotransmitters in ameliorating the response to stress has already been established. One neurotransmitter accumulated by the plants is gamma-aminobutyric acid (GABA), a non-protein amino acid that is essential for signaling in plant growth regulation and development via the control of physiological and biochemical processes. Plant tissues demonstrate rapid accumulation of GABA when exposed to various abiotic stresses. Consequently, it is imperative to understand how this accumulation affects the resistance and productivity of crops in challenging environmental conditions. Previously, different application methods and doses of GABA on different plant species were used under various abiotic stress conditions. The research findings exhibited that the method and concentration of GABA depend on the type of crop. Furthermore, the GABA dose depends on the methods of GABA application. The present review summarizes the potential doses and methods of applications of GABA under different abiotic stress conditions to ameliorate deficiencies in plant growth, yield, and stress tolerance through the avoidance of oxidative damage and maintenance of cell organelle structures. This review will also describe the complex mechanism by which GABA contributes to the attenuation of the effects of abiotic stresses by regulating some important physiological, molecular, and biochemical processes in crops. Full article