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14 pages, 696 KiB  
Article
Modeling Temperature Requirements for Growth and Toxin Production of Alternaria spp. Associated with Tomato
by Irene Salotti, Paola Giorni, Chiara Dall’Asta and Paola Battilani
Toxins 2025, 17(8), 361; https://doi.org/10.3390/toxins17080361 - 23 Jul 2025
Viewed by 203
Abstract
Concerns about mycotoxin contamination by Alternaria spp. in tomato-based products emphasize the need for understanding the effect of the environment on their production. In the current study, we focused on three species frequently associated with tomato (A. alternata, A. solani, [...] Read more.
Concerns about mycotoxin contamination by Alternaria spp. in tomato-based products emphasize the need for understanding the effect of the environment on their production. In the current study, we focused on three species frequently associated with tomato (A. alternata, A. solani, and A. tenuissima) by evaluating the effects of different temperatures (5 to 40 °C) and substrata (PDA and V8) on mycelial growth and the production of mycotoxins (alternariol, alternariol monomethyl ether, and tenuazonic acid). Both biological processes were supported between 5 and 35 °C, with optimal temperatures between 20 and 30 °C, depending on the species. Temperature and its interaction with species significantly (p < 0.05) affected both processes. However, the species factor alone was not significant (p > 0.05), indicating that environmental conditions affect Alternaria spp. growth and mycotoxin production more than the species itself does. Mathematical equations were developed to describe the effect of temperature on mycelial growth, as well as on the production of AOH, AME, and TeA, for each Alternaria species. High concordance (CCC ≥ 0.807) between observed and predicted data and low levels of residual error (RMSE ≤ 0.147) indicated the high goodness of fit of the developed equations, which may be used for the development of models to predict Alternaria contamination both in field and during post-harvest storage. Full article
(This article belongs to the Special Issue Mycotoxins in Food Safety: Challenges and Biocontrol Strategies)
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13 pages, 3191 KiB  
Article
Assessment of Fatty Acid Concentrations Among Blood Matrices
by Ysphaneendra Mallimoggala, Monalisa Biswas, Leslie Edward S. Lewis, Vijetha Shenoy Belle, Arjun Asok and Varashree Bolar Suryakanth
Metabolites 2025, 15(7), 482; https://doi.org/10.3390/metabo15070482 - 17 Jul 2025
Viewed by 301
Abstract
Background/Objectives: Fatty acids, the building blocks of lipids, contribute to numerous crucial life processes and are implicated in numerous disease pathologies. Circulating fatty acids can be extracted/trans-esterified to their respective methyl ester forms and quantified from a variety of biological samples. This [...] Read more.
Background/Objectives: Fatty acids, the building blocks of lipids, contribute to numerous crucial life processes and are implicated in numerous disease pathologies. Circulating fatty acids can be extracted/trans-esterified to their respective methyl ester forms and quantified from a variety of biological samples. This study aims to identify quantifiable fatty acids (through alkali trans-esterification) in human circulation, assess the correlation of the detectable fatty acid methyl esters (FAMEs) compounds between whole blood, serum and plasma matrices and propose the most ideal matrix for quantification of FAMEs. Methods: This anonymised study was carried out in a tertiary hospital after obtaining ethical approval and involved analysis of residual fasting whole blood, serum and plasma samples obtained from 20 apparently healthy subjects attending the routine health check services at the study centre. Fatty acids were converted to its methyl ester form by methanolic KOH trans-esterification and subjected to GCMS analysis. Paired t test, Pearsons’s correlation, linear regression and Bland Altman test were employed to assess the agreeability between matrices. Results: 9 out of 37 FAME compounds were detected in all three matrices. Strong correlations and statistically significant regression equations were obtained for the 9 compounds between plasma and serum matrices. Undecanoate, pentadecanoate, linolenate, and palmitate levels were lowest in plasma, while stearate, heptadecanoate levels were highest in whole blood. Myristate was highest in serum, dodecanoate was highest in plasma while docosahexanoate was found to be comparable in all three matrices. Methyl ester forms of dodeconate, myristate, pentadecanoate, palmitate, heptadecanoate, stearate, and linolenate were observed in higher concentrations in plasma when compared to serum. Conclusions: The current study shows similar & correlating FAME concentrations between serum and plasma matrix; however, whole blood FAME concentrations appear significantly different. Plasma serves as the most ideal matrix for detection and quantification of circulating fatty acids. Full article
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32 pages, 1397 KiB  
Review
Prognostic Significance of the Comprehensive Biomarker Analysis in Colorectal Cancer
by Vera Potievskaya, Elizaveta Tyukanova, Marina Sekacheva, Zaki Fashafsha, Anastasia Fatyanova, Mikhail Potievskiy, Elena Kononova, Anna Kholstinina, Ekatherina Polishchuk, Peter Shegai and Andrey Kaprin
Life 2025, 15(7), 1100; https://doi.org/10.3390/life15071100 - 14 Jul 2025
Viewed by 680
Abstract
Colorectal carcinoma remains one of the primary contributors to cancer deaths; however, it is also considered a preventable type of cancer, because the prognosis of the disease is directly dependent on its timely detection. Developing accurate risk prediction models for colorectal cancer is [...] Read more.
Colorectal carcinoma remains one of the primary contributors to cancer deaths; however, it is also considered a preventable type of cancer, because the prognosis of the disease is directly dependent on its timely detection. Developing accurate risk prediction models for colorectal cancer is crucial for identifying individuals at both low and high risk, as risk stratification determines the need for additional interventions, which carry their own risks. The development of new non-invasive diagnostic methods based on biomaterial analysis, alongside standard diagnostic techniques such as colonoscopy with biopsy, computed tomography scanning, and magnetic resonance imaging, can address multiple objectives: improving screening accuracy, providing a comprehensive assessment of minimal residual disease, identifying patients at a high risk of colorectal cancer, and evaluating the effectiveness of ongoing treatments. The lack of sensitive diagnostic methods drives contemporary research toward the discovery of new tools for detecting tumor cells, particularly through the examination of biological materials, including blood, exhaled air, and tumor tissue itself. In this article, we analyze current studies regarding biomarkers in colorectal cancer and prognostic significance. Full article
(This article belongs to the Section Physiology and Pathology)
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25 pages, 749 KiB  
Article
Effect of Gold Nanoparticles Against Tetranychus urticae and Phytoseiulus persimilis in Tomato
by José Guadalupe Ontiveros-Guerra, Sonia Noemí Ramírez-Barrón, Luis Alberto Aguirre-Uribe, Julio Cesar Chacón-Hernández, Miriam Sánchez-Vega, Ernesto Cerna-Chávez, Josué Israel García-López, Alberto Antonio Neira-Vielma, Héctor Iván Meléndez-Ortiz and Agustín Hernández-Juárez
Agronomy 2025, 15(7), 1684; https://doi.org/10.3390/agronomy15071684 - 12 Jul 2025
Viewed by 582
Abstract
The two-spotted spider mite Tetranychus urticae Koch (Acari: Tetranychidae) is a major pest of horticultural, ornamental, fruit, and strawberry crops worldwide. Currently, various management tools have been explored for this pest, with nanoparticles being one of them, which stand out for their characteristics [...] Read more.
The two-spotted spider mite Tetranychus urticae Koch (Acari: Tetranychidae) is a major pest of horticultural, ornamental, fruit, and strawberry crops worldwide. Currently, various management tools have been explored for this pest, with nanoparticles being one of them, which stand out for their characteristics and multiple effects. This study evaluated the effects of green-synthesized gold nanoparticles (AuNPs) on the mortality and repellency of T. urticae and its natural predator Phytoseiulus persimilis under laboratory conditions, as well as their efficacy in greenhouse tomatoes against T. urticae. In the laboratory, a biological window for AuNPs (50–100 mg L−1) on the pest and predator was established using a residual film method and a free-choice assay. In the greenhouse, four concentrations (300, 500, 750, and 1000 mg L−1) were evaluated via foliar application at 10-day intervals. The results showed susceptibility to AuNPs in all stages of T. urticae and the adult P. persimilis. The death times from AuNPs were similar in both species. Furthermore, the AuNPs were selective for the pest rather than the natural enemy. In greenhouses, AuNPs affected T. urticae populations in tomato plants, and significant differences were observed on some continuous and final agronomic variables (associated with fruits). This study showed that T. urticae and P. persimilis were susceptible to green-synthesized AuNPs. AuNPs can be a management tool, although studies on other non-target species and estimating agronomic effects on other crops are recommended. Full article
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22 pages, 3729 KiB  
Article
Assessing the Impact of Residual Municipal Solid Waste Characteristics on Screw Press Performance in a Mechanical Biological Treatment Plant Optimized with Anaerobic Digestion
by Rzgar Bewani, Abdallah Nassour, Thomas Böning, Jan Sprafke and Michael Nelles
Sustainability 2025, 17(14), 6365; https://doi.org/10.3390/su17146365 - 11 Jul 2025
Cited by 1 | Viewed by 340
Abstract
Mechanical–biological treatment plants face challenges in effectively separating organic fractions from residual municipal solid waste for biological treatment. This study investigates the optimization measures carried out at the Erbenschwang MBT facility, which transitioned from solely aerobic treatment to integrated anaerobic digestion using a [...] Read more.
Mechanical–biological treatment plants face challenges in effectively separating organic fractions from residual municipal solid waste for biological treatment. This study investigates the optimization measures carried out at the Erbenschwang MBT facility, which transitioned from solely aerobic treatment to integrated anaerobic digestion using a screw press. This study focused on evaluating the efficiency of each mechanical pretreatment step by investigating the composition of the residual waste, organic fraction recovery rate, and screw press performance in recovering organic material and biogas to press water. The results showed that 92% of the organic material from the residual waste was recovered into fine fractions after shredding and trommel screening. The pressing experiments produced high-quality press water with less than 3% inert material (0.063–4 mm size). Mass balance analysis revealed that 47% of the input fresh mass was separated into press water, corresponding to 24% of the volatile solids recovered. Biogas yield tests showed that the press water had a biogas potential of 416 m3/ton VS, recovering 38% of the total biogas potential. In simple terms, the screw press produced 32 m3 of biogas per ton of mechanically separated fine fractions and 20 m3 per ton of input residual waste. This low-pressure, single-step screw press efficiently and cost-effectively prepares anaerobic digestion feedstock, making it a promising optimization for both existing and new facilities. The operational configuration of the screw press remains an underexplored area in current research. Therefore, further studies are needed to systematically evaluate key parameters such as screw press pressure (bar), liquid-to-waste (L/ton), and feed rate (ton/h). Full article
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23 pages, 1343 KiB  
Review
Nano-Enabled Insecticides for Efficient Pest Management: Definition, Classification, Synergistic Mechanism, and Safety Assessment
by Ying Wei, Jingyi Chen, Min Dong, Meizhen Yin, Jie Shen, Le Gao and Shuo Yan
Nanomaterials 2025, 15(13), 1050; https://doi.org/10.3390/nano15131050 - 6 Jul 2025
Viewed by 414
Abstract
The widespread use of pesticides plays a vital role in safeguarding crop yields and ensuring global food security. However, their improper application has led to serious challenges, including environmental pollution, pesticide residues, and increasing insect resistance. Traditional chemical pesticides are no longer sufficient [...] Read more.
The widespread use of pesticides plays a vital role in safeguarding crop yields and ensuring global food security. However, their improper application has led to serious challenges, including environmental pollution, pesticide residues, and increasing insect resistance. Traditional chemical pesticides are no longer sufficient to meet the demands for sustainable modern agriculture. Recent advances in nanotechnology offer innovative strategies for improving pesticide delivery, bioavailability, and selectivity. This review systematically summarizes the current progress in nano-insecticides, including their definitions, classification, preparation techniques, synergistic mechanisms, insecticidal performance, and safety evaluation. In addition, emerging strategies, such as multi-stimuli responsive systems, co-delivery with multiple agents or genetic materials, and integration with biological control, are discussed. Finally, future perspectives are proposed to guide the design/development of intelligent, efficient, and eco-friendly nano-insecticides for sustainable pest management in modern agriculture. Full article
(This article belongs to the Section Environmental Nanoscience and Nanotechnology)
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15 pages, 584 KiB  
Review
The Role of Non-HDL Cholesterol and Apolipoprotein B in Cardiovascular Disease: A Comprehensive Review
by Vasiliki Katsi, Nikolaos Argyriou, Christos Fragoulis and Konstantinos Tsioufis
J. Cardiovasc. Dev. Dis. 2025, 12(7), 256; https://doi.org/10.3390/jcdd12070256 - 4 Jul 2025
Viewed by 829
Abstract
Atherosclerotic cardiovascular disease (ASCVD) remains the leading global cause of morbidity and mortality, even in the era of aggressive low-density lipoprotein cholesterol (LDL-C) lowering. This persistent residual risk has prompted a reevaluation of atherogenic lipid markers, with non-high-density lipoprotein cholesterol (non-HDL-C) and apolipoprotein [...] Read more.
Atherosclerotic cardiovascular disease (ASCVD) remains the leading global cause of morbidity and mortality, even in the era of aggressive low-density lipoprotein cholesterol (LDL-C) lowering. This persistent residual risk has prompted a reevaluation of atherogenic lipid markers, with non-high-density lipoprotein cholesterol (non-HDL-C) and apolipoprotein B (Apo B) emerging as superior indicators of the total atherogenic particle burden. Unlike LDL-C, non-HDL-C includes cholesterol from all atherogenic lipoproteins, while Apo B reflects the total number of atherogenic particles regardless of cholesterol content. Their clinical relevance is underscored in populations with diabetes, obesity, and hypertriglyceridemia, where LDL-C may not adequately reflect cardiovascular risk. This review explores the biological, clinical, and genetic foundations of non-HDL-C and Apo B as critical tools for risk stratification and therapeutic targeting. It highlights discordance analysis, inflammatory mechanisms in atherogenesis, the influence of metabolic syndromes, and their utility in specific populations, including those with chronic kidney disease and children with familial hypercholesterolemia. Additionally, the role of lipoprotein (a), glycation in diabetes, and hypertriglyceridemia are examined as contributors to residual risk. Clinical trials and genetic studies support Apo B and non-HDL-C as more robust predictors of cardiovascular events than LDL-C. Current guidelines increasingly endorse these markers as secondary or even preferred targets in complex lipid disorders. The incorporation of Apo B and non-HDL-C into routine clinical practice, especially for patients with residual risk, represents a paradigm shift toward personalized cardiovascular prevention. The review concludes with recommendations for guideline integration, emerging therapies, and future directions in biomarker-driven cardiovascular risk management. Full article
(This article belongs to the Special Issue Effect of Lipids and Lipoproteins on Atherosclerosis)
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36 pages, 1423 KiB  
Review
Baculoviruses as Microbial Pesticides: Potential, Challenges, and Market Overview
by Maider Martínez-Balerdi, Javier Caballero, Eduardo Aguirre, Primitivo Caballero and Inés Beperet
Viruses 2025, 17(7), 917; https://doi.org/10.3390/v17070917 - 27 Jun 2025
Viewed by 572
Abstract
Baculoviruses represent a promising group of microbial insecticides for the biological control of agricultural pests, particularly those within the order Lepidoptera. Their high host specificity and environmental safety make them ideal candidates for inclusion in integrated pest management (IPM) programs. This review presents [...] Read more.
Baculoviruses represent a promising group of microbial insecticides for the biological control of agricultural pests, particularly those within the order Lepidoptera. Their high host specificity and environmental safety make them ideal candidates for inclusion in integrated pest management (IPM) programs. This review presents a comprehensive overview of baculovirus biology, highlighting their infection mechanisms, selectivity, and ecological compatibility. Special attention is given to advances in mass production systems—both in vivo and in vitro—and formulation technologies that improve field efficacy and environmental persistence, including UV protectants and microencapsulation. Regulatory aspects are also discussed, comparing international approval pathways and highlighting the disparity between regions with supportive policies (e.g., Latin America, Asia) and those with more restrictive frameworks (e.g., the European Union). Additionally, the current global market landscape for baculovirus-based products is examined, with emphasis on recent growth, commercialized formulations, and challenges such as host resistance and the limited spectrum of action. By synthesizing findings from the scientific literature and industry reports, this review underscores the role of baculoviruses as effective, sustainable alternatives or complements to chemical insecticides in modern agriculture, contributing to the reduction in pesticide residues and environmental impact. Full article
(This article belongs to the Special Issue Insect Viruses and Pest Management, the Third Edition)
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13 pages, 243 KiB  
Review
Circulating Tumor DNA in Muscle-Invasive Bladder Cancer: Implications for Prognosis and Treatment Personalization
by Stamatios Katsimperis, Lazaros Tzelves, Georgios Feretzakis, Themistoklis Bellos, Ioannis Tsikopoulos, Nikolaos Kostakopoulos and Andreas Skolarikos
Cancers 2025, 17(12), 1908; https://doi.org/10.3390/cancers17121908 - 8 Jun 2025
Cited by 1 | Viewed by 871
Abstract
Muscle-invasive bladder cancer (MIBC) is a biologically aggressive disease with high recurrence rates, despite advances in surgical and systemic therapies. Circulating tumor DNA (ctDNA), a tumor-specific fraction of cell-free DNA, has emerged as a promising non-invasive biomarker for the real-time assessment of tumor [...] Read more.
Muscle-invasive bladder cancer (MIBC) is a biologically aggressive disease with high recurrence rates, despite advances in surgical and systemic therapies. Circulating tumor DNA (ctDNA), a tumor-specific fraction of cell-free DNA, has emerged as a promising non-invasive biomarker for the real-time assessment of tumor burden, treatment response, and minimal residual disease (MRD). This review explores the biological basis, detection technologies, and clinical utility of ctDNA in MIBC, highlighting its role in preoperative risk stratification, postoperative surveillance, and personalized decision-making for adjuvant and systemic therapies. We critically examine current evidence from pivotal trials and ongoing studies that support ctDNA’s prognostic and predictive value. Additionally, we discuss emerging applications, including ctDNA-guided immunotherapy, integration with imaging and molecular data, and potential to inform bladder-sparing strategies. While ctDNA presents technical and logistical challenges, its incorporation into prospective clinical workflows promises to enhance precision oncology and improve outcomes in patients with MIBC. Full article
37 pages, 9912 KiB  
Review
Advances in Hydrogel-Integrated SERS Platforms: Innovations, Applications, Challenges, and Future Prospects in Food Safety Detection
by Xorlali Nunekpeku, Huanhuan Li, Ayesha Zahid, Chenhui Li and Wei Zhang
Biosensors 2025, 15(6), 363; https://doi.org/10.3390/bios15060363 - 5 Jun 2025
Viewed by 1247
Abstract
Background: Food safety remains a global concern due to biological and chemical contaminants, including adulterants, pathogens, antibiotic residues, and pesticides. Traditional detection methods are accurate but limited by time requirements, complex sample preparation, high costs, and poor field applicability. Surface-Enhanced Raman Spectroscopy [...] Read more.
Background: Food safety remains a global concern due to biological and chemical contaminants, including adulterants, pathogens, antibiotic residues, and pesticides. Traditional detection methods are accurate but limited by time requirements, complex sample preparation, high costs, and poor field applicability. Surface-Enhanced Raman Spectroscopy (SERS) offers non-destructive analysis with low detection limits and high specificity, yet conventional SERS substrates face challenges with reproducibility, nanoparticle aggregation, and sensitivity in food matrices. Hydrogels have emerged as supporting materials for SERS due to their water content, tunable porosity, flexibility, and ability to entrap plasmonic nanostructures. Scope and Approach: This review examines recent advances in hydrogel-integrated SERS platforms for food safety applications. The three-dimensional structure of hydrogels enables homogeneous distribution of metal nanoparticles, prevents aggregation, and offers analyte enrichment. We analyze material design, functionalization strategies, and how hydrogel properties—crosslinking density, porosity, surface charge, and nanoparticle distribution—influence SERS performance in food matrices. Key Findings and Conclusions: Hydrogel-integrated SERS platforms demonstrate superior performance in detecting various food contaminants—including pesticides, adulterants, and additives—in real food matrices, often achieving detection limits in the nanomolar to picomolar range, depending on the analyte and substrate design. Current limitations include storage stability concerns, batch-to-batch variability, and regulatory acceptance hurdles. Future research directions should focus on multiplex detection capabilities, integration with smart sensing technologies, and industrial scalability to facilitate practical deployment in global food safety monitoring across diverse supply chains. Full article
(This article belongs to the Special Issue Advanced SERS Biosensors for Detection and Analysis)
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26 pages, 2636 KiB  
Review
The Role of Methylation Modification in Neural Injury and Repair
by Saizhen Lv, Yanyu Pan, Tiemei Zheng, Qianqian Cao, Bin Yu, Fengquan Zhou and Dong Wang
Int. J. Mol. Sci. 2025, 26(11), 5349; https://doi.org/10.3390/ijms26115349 - 2 Jun 2025
Viewed by 785
Abstract
The diverse methylation modifications of DNA, histones and RNA have emerged as pivotal regulatory mechanisms of gene expression in multiple biological processes at the epigenetic level. They function by coordinating gene expression through impacting gene transcription, mRNA processing and maturation, protein translation and [...] Read more.
The diverse methylation modifications of DNA, histones and RNA have emerged as pivotal regulatory mechanisms of gene expression in multiple biological processes at the epigenetic level. They function by coordinating gene expression through impacting gene transcription, mRNA processing and maturation, protein translation and metabolism. Changes in methylation profiles of nucleic acids and histones have been observed in many different types neural injuries in both the central nervous system and the peripheral nervous system, such as 5-methylcytosine in DNA, N6-methyladenosine in RNA and methylation of lysine residues in various histones. Importantly, altering these modifications plays key roles in regulation of neural injury and repair. In this review, we highlight recent research advances of the methylation-related epigenetic modifications in multiple aspects of neural injury and regeneration, including neural protection, axon regeneration, microenvironment modulation and neural functional recovery. We also discuss the current unsolved problems in the field and propose potential future research directions. Full article
(This article belongs to the Section Molecular Neurobiology)
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11 pages, 761 KiB  
Perspective
Tea Catechins: Potential Plant-Derived Feed Additives for Improving Chicken Intestinal Health and Productivity
by Bing Tian, Wenjing Zhuang, Yanle Fan, Yun Hu, Xiaoyan Cui, Tingting Li, Liyang Zhang, Xugang Luo and Shengchen Wang
Animals 2025, 15(11), 1553; https://doi.org/10.3390/ani15111553 - 26 May 2025
Viewed by 478
Abstract
In response to the global antimicrobial resistance and residue issues, most countries and regions have implemented comprehensive bans on the use of growth-promoting antibiotics in animal feed formulations. Catechins are a group of polyphenolic compounds that are naturally present in many fruits and [...] Read more.
In response to the global antimicrobial resistance and residue issues, most countries and regions have implemented comprehensive bans on the use of growth-promoting antibiotics in animal feed formulations. Catechins are a group of polyphenolic compounds that are naturally present in many fruits and plant-derived foods, emerging as potential antibiotic-alternative additives for promoting gut health and production performance in poultry farming. The compounds demonstrate dual biological functions: mitigating oxidative tissue damage and actively remodeling gut microbiota composition by suppressing enteric pathogens (e.g., Clostridium) and enriching beneficial bacteria (e.g., Bifidobacterium). Such multifaceted regulation enhances intestinal barrier integrity, thereby improving nutrient absorption and translating into measurable production benefits, including elevated growth rates and feed conversion efficiency. The current research suggests that the added levels of catechins in chicken diets ranges from 40 to 600 mg/kg. However, the research and application of catechins in chicken production are still at the initial stage, which requires more attention worldwide and further mechanism exploration. This mini-review synthesizes recent research findings on the effects of catechins on chicken health, aiming to promote the formulation of feed additive strategies using plant-derived compounds such as catechins as substitutes for antibiotics, to maintain the health of poultry and other animals while preserving production performance. Full article
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7 pages, 1199 KiB  
Communication
The Industrial Residue of Andiroba (Carapa sp.): A Promising Source of Natural Acaricides Against Dermacentor nitens (Acari: Ixodidae)
by Daniela Bianchi, Raidel Reis dos Santos, Poliana Leão Peleja, Ana Beatriz Barbosa de Sousa, Marcelo da Silva Evangelista, José Sousa de Almeida Júnior, Lauro Euclides Soares Barata, Waldiney Pires Moraes and Antonio Humberto Hamad Minervino
Vet. Sci. 2025, 12(5), 421; https://doi.org/10.3390/vetsci12050421 - 29 Apr 2025
Viewed by 484
Abstract
Dermacentor nitens (tropical horse tick) is a tick species commonly found parasitizing horses and other equids in the Amazon region, causing economic losses. Currently, tick control is based on chemical acaricides, usually in a power formulation for topical use. However, its indiscriminate use [...] Read more.
Dermacentor nitens (tropical horse tick) is a tick species commonly found parasitizing horses and other equids in the Amazon region, causing economic losses. Currently, tick control is based on chemical acaricides, usually in a power formulation for topical use. However, its indiscriminate use results in the emergence of resistant tick lineages. Several plant compounds have been tested for their acaricide activity. In the Amazon, several plants are used for oil extraction, resulting in the production of solid residue (waste) that may contain chemical molecules with biological activities. Thus, we aimed to test the in vitro acaricidal potential of the ethanolic extract of the industrial residue of andiroba (Carapa sp.) against D. nitens. In a larval immersion test (LIT), D. nitens larvae were tested with 2.5%, 5%, and 10% andiroba extract concentrations in three replicates. Subsequently, the envelopes were kept in a BOD chamber (28 °C ± 1 °C; 80% ± 5% humidity) for 24 h. At the end of this period, live and dead larvae were counted, and efficiency was calculated from the mortality rate caused by the extract and corrected by the Abbot formula. In the three repetitions, the andiroba extract at a concentration of 5% caused the death of 100% of the larvae. At concentrations of 2.5% and 10%, they caused the death of, respectively, 12.38% (±3.5%) and 69.79% (±7.98%) of the larvae. These results indicate that the extract from the industrial residue from the production of andiroba oil has acaricidal activity. It is concluded that the solid waste from industrial andiroba oil extraction has the potential for the development of natural acaricides against D. nitens. Full article
(This article belongs to the Topic Ticks and Tick-Borne Pathogens)
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36 pages, 3831 KiB  
Article
Computer-Aided Discovery of Natural Compounds Targeting the ADAR2 dsRBD2-RNA Interface and Computational Modeling of Full-Length ADAR2 Protein Structure
by Carolyn N. Ashley, Emmanuel Broni, Michelle Pena-Martinez, Chanyah M. Wood, Samuel K. Kwofie and Whelton A. Miller
Int. J. Mol. Sci. 2025, 26(9), 4075; https://doi.org/10.3390/ijms26094075 - 25 Apr 2025
Viewed by 827
Abstract
Mesothelioma is a rare and aggressive cancer linked to asbestos exposure and characterized by rapid metastasis and poor prognosis. Inhibition of adenosine deaminase acting on dsRNA 2 (ADAR2) RNA binding but not ADAR2 editing has shown antitumor effects in mesothelioma. Natural compounds from [...] Read more.
Mesothelioma is a rare and aggressive cancer linked to asbestos exposure and characterized by rapid metastasis and poor prognosis. Inhibition of adenosine deaminase acting on dsRNA 2 (ADAR2) RNA binding but not ADAR2 editing has shown antitumor effects in mesothelioma. Natural compounds from the Traditional Chinese Medicine (TCM) database were docked to the RNA-binding interface of ADAR2’s second dsRNA binding domain (dsRBD2), and their drug-likeness and predicted safety were assessed. Eight ligands (ZINC000085597263, ZINC000085633079, ZINC000014649947, ZINC000034512861, ZINC000070454124, ZINC000085594944, ZINC000085633008, and ZINC000095909822) showed high binding affinity to dsRBD2 from molecular mechanics Poisson–Boltzmann surface area (MM/PBSA) calculations. Protein–ligand interactions were analyzed to identify key residues contributing to these binding affinities. Molecular dynamics (MD) simulations of dsRBD–ligand–RNA complexes revealed that four compounds (ZINC000085597263, ZINC000085633079, ZINC000014649947, and ZINC000034512861) had negative binding affinities to dsRBD2 in the presence of the RNA substrate GluR-2. Key residues, including Val164, Met165, Lys209, and Lys212, were crucial for ligand binding, even with RNA present, suggesting these compounds could inhibit dsRBD2’s RNA-binding function. The predicted biological activities of these compounds indicate potential anticancer properties, particularly for the treatment of mesothelioma. These compounds are structurally similar to known anti-mesothelioma agents or anticancer drugs, highlighting their therapeutic potential. Current mesothelioma treatments are limited. Optimization of these compounds, alone or in combination with current therapeutics, has potential for mesothelioma treatment. Additionally, five high-quality full-length ADAR2 models were developed. These models provide insights into ADAR2 function, mutation impacts, and potential areas for protein engineering to enhance stability, RNA-binding specificity, or protein interactions, particularly concerning dimerization or complex formation with other proteins and RNAs. Full article
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15 pages, 4840 KiB  
Article
Research on Method for Intelligent Recognition of Deep-Sea Biological Images Based on PSVG-YOLOv8n
by Dali Chen, Xianpeng Shi, Jichao Yang, Xiang Gao and Yugang Ren
J. Mar. Sci. Eng. 2025, 13(4), 810; https://doi.org/10.3390/jmse13040810 - 18 Apr 2025
Viewed by 424
Abstract
Deep-sea biological detection is a pivotal technology for the exploration and conservation of marine resources. Nonetheless, the inherent complexities of the deep-sea environment, the scarcity of available deep-sea organism samples, and the significant refraction and scattering effects of underwater light collectively impose formidable [...] Read more.
Deep-sea biological detection is a pivotal technology for the exploration and conservation of marine resources. Nonetheless, the inherent complexities of the deep-sea environment, the scarcity of available deep-sea organism samples, and the significant refraction and scattering effects of underwater light collectively impose formidable challenges on the current detection algorithms. To address these issues, we propose an advanced deep-sea biometric identification framework based on an enhanced YOLOv8n architecture, termed PSVG-YOLOv8n. Specifically, our model integrates a highly efficient Partial Spatial Attention module immediately preceding the SPPF layer in the backbone, thereby facilitating the refined, localized feature extraction of deep-sea organisms. In the neck network, a Slim-Neck module (GSconv + VoVGSCSP) is incorporated to reduce the parameter count and model size while simultaneously augmenting the detection performance. Moreover, the introduction of a squeeze–excitation residual module (C2f_SENetV2), which leverages a multi-branch fully connected layer, further bolsters the network’s global representational capacity. Finally, an improved detection head synergistically fuses all the modules, yielding substantial enhancements in the overall accuracy. Experiments conducted on a dataset of deep-sea images acquired by the Jiaolong manned submersible indicate that the proposed PSVG-YOLOv8n model achieved a precision of 79.9%, an mAP50 of 67.2%, and an mAP50-95 of 50.9%. These performance metrics represent improvements of 1.2%, 2.3%, and 1.1%, respectively, over the baseline YOLOv8n model. The observed enhancements underscore the effectiveness of the proposed modifications in addressing the challenges associated with deep-sea organism detection, thereby providing a robust framework for accurate deep-sea biological identification. Full article
(This article belongs to the Section Ocean Engineering)
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