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Keywords = benzopyran derivatives

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20 pages, 1685 KB  
Article
Probabilistic Ecological Risk Assessment of Synthetic Musk Compounds in the Han River Estuary: Integrating Multi-Year Monitoring and Explainable Machine Learning
by Jungmin Jo, Na Rae Choi, Eunjin Lee, Jae Won Yoo, Dong Sik Ahn, Ji Yi Lee and Yun Gyong Ahn
Toxics 2026, 14(8), 718; https://doi.org/10.3390/toxics14080718 - 13 Aug 2026
Viewed by 373
Abstract
Synthetic musk compounds (SMCs) are emerging contaminants frequently detected in aquatic environments due to their widespread use in personal care and household products. This study investigated the occurrence, environmental drivers, and ecological risks of twelve SMCs in the Han River estuary and adjacent [...] Read more.
Synthetic musk compounds (SMCs) are emerging contaminants frequently detected in aquatic environments due to their widespread use in personal care and household products. This study investigated the occurrence, environmental drivers, and ecological risks of twelve SMCs in the Han River estuary and adjacent coastal waters, Korea, using three years of monitoring data (2020–2022). A total of 222 water samples from 13 monitoring stations were analyzed by GC–MS. 1,3,4,6,7,8-hexahydro-4,6,6,7,8,8-hexamethylcyclopenta-(g)-2-benzopyran (HHCB) was the dominant compound, followed by musk ketone (MK). Total SMC concentrations ranged from non-detectable levels to 157.6 μg/L, with the highest concentrations consistently observed at wastewater treatment facilities. XGBoost-SHAP analysis identified total nitrogen (TN) as the most influential predictor of SMC occurrence. This association reflects the shared wastewater origin of the two rather than any causal link, so that TN serves as an indicator of wastewater influence rather than of SMC concentration itself. Ecological risks were evaluated using Monte Carlo-based probabilistic hazard quotient (HQ) analysis. HHCB and MK exhibited the highest risks, with mean HQ values exceeding 1.0 at wastewater treatment facilities, indicating potential ecological concern. In contrast, most coastal sites showed low risk levels. The observed spatial patterns identified wastewater discharge zones as major hotspots of SMC exposure and ecological risk. These findings highlight the importance of wastewater-derived SMCs as emerging contaminants in estuarine environments and demonstrate the utility of integrating long-term monitoring, explainable machine learning, and probabilistic risk assessment for ecological risk characterization. Full article
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37 pages, 5844 KB  
Review
A Brief Review of Synthetic Strategies of α-Pyrone-Based Phloroglucinol Derivatives from Helichrysum spp. and Structure–Activity Insights
by Yulian Voynikov, Konstantin Konstantinov, Iliyan Ivanov and Stanimir Manolov
Sci. Pharm. 2026, 94(3), 58; https://doi.org/10.3390/scipharm94030058 - 13 Jul 2026
Viewed by 427
Abstract
This review summarizes the synthesis and structural modification of α-pyrone-containing phloroglucinol derivatives from Helichrysum species. Synthetic routes to both natural products and synthetic analogues are covered, highlighting strategies ranging from β-keto ester cyclodehydration to multicomponent condensations. Key methods include aldehyde-mediated dimerization, [...] Read more.
This review summarizes the synthesis and structural modification of α-pyrone-containing phloroglucinol derivatives from Helichrysum species. Synthetic routes to both natural products and synthetic analogues are covered, highlighting strategies ranging from β-keto ester cyclodehydration to multicomponent condensations. Key methods include aldehyde-mediated dimerization, fluoride-catalyzed heterodimerization, and acid-catalyzed cyclization to benzopyran frameworks. The reported approaches enabled access to diverse monopyrone, dipyrone, arzanol-type, and cyclized analogues. Additionally, retrosynthetic analyses toward phloroglucinol–pyrone heterodimers are discussed, highlighting convergent synthetic strategies for future access to benzofurane-, chromene-, and chromane-based analogues. This review integrates published experimental data with newly generated in silico predictions. Full article
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14 pages, 1312 KB  
Article
New Cyclohexenols and Benzopyran Derivatives from Fungus Aspergillus fumigatus F15ZA56
by Ningning Shi, Junling Guo, Zhen Zhang, Feng Jing, Shuoyu Zhao, Yan Fu, Xinhua Lu, Yucheng Gu, Binliang Tong and Manli Zhang
J. Fungi 2026, 12(7), 504; https://doi.org/10.3390/jof12070504 - 9 Jul 2026
Viewed by 544
Abstract
A chemical study of the fungus Aspergillus fumigatus F15ZA56 resulted in the elucidation of eight previously undescribed cyclohexenols, aspergienynes R-Y (1, 511), and three new benzopyran derivatives (24), together with two known analogues ( [...] Read more.
A chemical study of the fungus Aspergillus fumigatus F15ZA56 resulted in the elucidation of eight previously undescribed cyclohexenols, aspergienynes R-Y (1, 511), and three new benzopyran derivatives (24), together with two known analogues (1213). The structures were determined based on HRESIMS and extensive NMR data. The absolute configurations of the chiral carbons in the new compounds were ultimately confirmed by ECD analysis. Bioactivity assays showed that compounds 4, 12 and 13 had significant inhibitory activities against TCPTP, PTP1B, and MEG2 (IC50 12.20–62.19 nM). Notably, compound 12 exhibited notable selectivity towards PTP1B (IC50 12.20 nM) over the tested phosphatases, comparable to the reference inhibitor AC484 (9.12 nM). Full article
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12 pages, 994 KB  
Article
Generation of Novel Natural Products by Disrupting Azaphilone Synthesis in Penicillum sclerotiorum E23Y-1A
by Wenjun Chang, Yanhua Yang, Ruijun Duan, Heye Qin, Shiwen Chen and Yanbo Zeng
Mar. Drugs 2026, 24(3), 95; https://doi.org/10.3390/md24030095 - 27 Feb 2026
Viewed by 954
Abstract
Marine-derived filamentous fungi are a rich source of structurally diverse and biologically active natural products. However, many biosynthetic gene clusters (BGCs) in fungi remain silent under standard conditions. In this study, we employed a metabolic shunting strategy to disrupt azaphilone biosynthesis in the [...] Read more.
Marine-derived filamentous fungi are a rich source of structurally diverse and biologically active natural products. However, many biosynthetic gene clusters (BGCs) in fungi remain silent under standard conditions. In this study, we employed a metabolic shunting strategy to disrupt azaphilone biosynthesis in the marine-derived fungus Penicillium sclerotiorum E23Y-1A by deleting the pathway-specific regulator gene A00667. HPLC analysis revealed the emergence of new metabolite peaks in the mutant strain Δ667 compared to the wild type. Subsequent purification yielded seven compounds: the mutant produced two novel meroterpenoids sclerotilins A and B (1 and 2) along with the known steroids ergosta-5,7,22-trien-3β-ol (3) and cerevisterol (4), while the wild type yielded the known steroid (22E)-5α,8α-epidioxyergosta-6,22-dien-3β-ol (5) and two azaphilones geumsanol G (6) and 5-chloro-3-[(1E,3R,4R,5S)-3,4-dihydroxy-3,5-dimethyl-1-hepten-1-yl]-1,7,8,8a-tetrahydro-7,8-dihydroxy-7-methyl-(7R,8R,8aS)-6H-2-benzopyran-6-one (7). Bioactivity assays showed that compound 6 exhibited moderate antimicrobial activity against Staphylococcus aureus, and compound 3 displayed moderate cytotoxicity against five human cancer cell lines. These results demonstrate that A00667 is essential for azaphilone biosynthesis and that its disruption leads to the production of structurally distinct natural products, highlighting the potential of pathway engineering to redirect fungal metabolism to yield novel natural products. Full article
(This article belongs to the Section Marine Chemoecology for Drug Discovery)
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18 pages, 1878 KB  
Article
Cell Suspension of the Tree Fern Cyathea smithii (J.D. Hooker) and Its Metabolic Potential During Cell Growth: Preliminary Studies
by Jan J. Rybczyński, Łukasz Marczak, Katarzyna Skórkowska-Telichowska, Maciej Stobiecki, Jan Szopa and Anna Mikuła
Int. J. Mol. Sci. 2025, 26(23), 11683; https://doi.org/10.3390/ijms262311683 - 2 Dec 2025
Viewed by 899
Abstract
The purpose of this study was to present a chemical analysis of the metabolome of cell aggregates of the tree fern Cyathea smithii (J.D. Hooker) cell suspension culture. The LC/MS and GC/MS techniques were used for identification of metabolites. The kinetics of fresh [...] Read more.
The purpose of this study was to present a chemical analysis of the metabolome of cell aggregates of the tree fern Cyathea smithii (J.D. Hooker) cell suspension culture. The LC/MS and GC/MS techniques were used for identification of metabolites. The kinetics of fresh weight, dry weight, and ash content showed 3.5-fold increases during 15-day-long culture. The analysis demonstrated high metabolic activity of cultured cells. In total, 160 metabolites from primary and secondary metabolism and almost 2000 compounds of unknown identity were identified. Three flavonoids—the chalcone isookanin [(2S)-2-(3,4-dihydroxyphenyl)-7,8-dihydroxy-2,3-dihydrochromen-4-one], a methoxy derivative of the flavone gardenin B (5-Hydroxy-2-(4-methoxyphenyl)-6,7,8-trimethoxy-4H-1-benzopyran-4-one), and the isoflavone tectoridin (4′,5-Dihydro-6-methoxy-7-(O-glucoside)isoflavone)—had not been previously detected in the cell culture of C. smithii. Principal component analysis revealed five distinct groups of samples; groups 4 and 5 showed the greatest similarity and corresponded to cultures on days 12 and 15, respectively. The number of differentiating compounds was 75, indicated by a heatmap showing positive and negative correlations between the days of culture. The studies described in this paper are crucial for further identification of metabolites and establishing the relationship between the metabolic composition of tree fern cells in culture and their biological activity, assessed by physiological parameters. By determining the relationship between the chemical composition of cells and their growth from culture initiation to senescence, we will provide a more complete picture of the potential for environmental factors to regulate this relationship. Based on previous studies, environmental stimuli such as electromagnetic fields or light of different wavelengths can result in altered growth physiology and cell mass, as well as metabolite diversification and accumulation. The research results presented in this paper provide a foundation for further studies aimed at predicting and regulating the productivity of C. smithii cells in suspension culture and elucidating the significance of tree fern-derived metabolic products in human cell biology, particularly in thyroid cells. Full article
(This article belongs to the Special Issue Molecular Approach to Fern Development)
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31 pages, 8908 KB  
Review
Exploring Subtilisin Inhibition to Discover Antimalarial Drugs: Insights into Medicinal Chemistry and Drug Discovery
by Margarida Cochicho Leonardo, Sonaly Lima Albino, Wallyson Junio Santos de Araújo, Maria Verônica de Barros Nascimento, Juan David Rodríguez-Macías, Edgar Alexander Marquez Brazon, Ricardo Olimpio de Moura, Fátima Nogueira and Igor José dos Santos Nascimento
Pharmaceuticals 2025, 18(9), 1318; https://doi.org/10.3390/ph18091318 - 3 Sep 2025
Cited by 3 | Viewed by 1794
Abstract
Introduction: Malaria is a tropical disease caused by the parasite Plasmodium sp., which is considered a significant public health challenge, particularly in Africa. Among the species related to human infection, P. falciparum and P. vivax are known for their high incidence and pathogenicity. [...] Read more.
Introduction: Malaria is a tropical disease caused by the parasite Plasmodium sp., which is considered a significant public health challenge, particularly in Africa. Among the species related to human infection, P. falciparum and P. vivax are known for their high incidence and pathogenicity. Despite several approved drugs in the treatment, the increase in resistance mechanisms is becoming increasingly prevalent, which makes the discovery of effective and safer drugs challenging. Thus, it is necessary to explore new mechanisms of action for the discovery of innovative antimalarial agents. Among the explored targets, proteases, especially subtilisin, have shown great promise in the development of new therapeutic options. Method: A narrative review was conducted using the main databases to provide critical information about the subtilisin to design antimalarial drugs. Results: Critical data were found about the isoforms of subtilisins, highlighting SUB1 and SUB2. SBDD approaches were able to show that compounds designed to target the catalytic Asp372, His428, and Ser606, and other such Leu469, Gly467, and Asn520 against SUB1, presented critical results. In addition, quinoline, benzopyran, and triterpene derivatives and peptide inhibitors show their importance, and these scaffolds can be explored in further work. Conclusions: Considering the relevance of this target, this review provided insights into medicinal chemistry, the discovery of antimalarial drugs that act by inhibiting subtilisin, and promoted a promising initiative to combat malaria. Full article
(This article belongs to the Special Issue Current Trends to Discover New Drugs Targeting Protease Inhibition)
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12 pages, 916 KB  
Article
Comparative Hepatoprotective Effects of Esculetin and Its Derivatives Against Oxidative Stress
by Yoonjeong Kim, Jihyun Kwon, Jae-Hwan Kwak, In-hwan Baek and Younghwa Kim
Antioxidants 2025, 14(7), 787; https://doi.org/10.3390/antiox14070787 - 26 Jun 2025
Cited by 4 | Viewed by 1635
Abstract
In this study, we evaluated the antioxidant activities of esculetin and four synthesized derivatives (E1, 2-oxo-2H-1-benzopyran-6,7-diyl diacetate; E2, 7-hydroxy-2-oxo-2H-1-benzopyran-6-yl acetate; E3, 7-(methoxymethoxy)-2-oxo-2H-1-benzopyran-6-yl acetate; E4, 7-hydroxy-2-oxo-2H-1-benzopyran-6-yl 2,4-dinitrobenzene-1-sulfonate) against oxidative stress in hepatocytes. In HepG2 cells, treatment with 1 mM tert-butyl hydroperoxide (TBHP) reduced [...] Read more.
In this study, we evaluated the antioxidant activities of esculetin and four synthesized derivatives (E1, 2-oxo-2H-1-benzopyran-6,7-diyl diacetate; E2, 7-hydroxy-2-oxo-2H-1-benzopyran-6-yl acetate; E3, 7-(methoxymethoxy)-2-oxo-2H-1-benzopyran-6-yl acetate; E4, 7-hydroxy-2-oxo-2H-1-benzopyran-6-yl 2,4-dinitrobenzene-1-sulfonate) against oxidative stress in hepatocytes. In HepG2 cells, treatment with 1 mM tert-butyl hydroperoxide (TBHP) reduced cell viability to 40%, while co-treatment with esculetin restored cell viability. Among the esculetin derivatives, E2 exhibited the most significant cytoprotective effect, while E4 showed the lowest. Furthermore, E2 at 25 µM concentration showed the similar effects to esculetin in reducing ROS generation and preventing glutathione depletion. The treatment of E2 also enhanced the expression of HO-1 and GCLC proteins against oxidative stress. On the other hand, TBHP-induced oxidative stress decreased antioxidant activities including glutathione reductase, glutathione peroxidase, and catalase; however, E2 significantly increased these antioxidant activities. These findings suggest that the esculetin derivative, particularly E2, possesses potential as an antioxidant aimed at enhancing physiological functions. Full article
(This article belongs to the Special Issue Antioxidant Capacity of Natural Products—2nd Edition)
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21 pages, 12869 KB  
Article
The Coumarin-Based Silver(I) Complex Showed Enhanced Antitumor and Antimicrobial Activity than Ligand Itself
by Jakub Kurjan, Zuzana Jendželovská, Viktória Dečmanová, Mária Vilková, Katarina Ćirković, Ivana Radojević, Miroslava Litecká, Rastislav Jendželovský and Ivan Potočňák
Inorganics 2025, 13(5), 164; https://doi.org/10.3390/inorganics13050164 - 14 May 2025
Cited by 3 | Viewed by 2463
Abstract
In this study, a novel silver(I) complex [Ag(HL1)2]NO3 (AgHL1) with coumarin derivative (3E)-3-(1-{[(pyridin-2-yl)methyl]amino}ethylidene)-3,4-dihydro-2H-benzopyran-2,4-dione (HL1) was prepared. The compounds HL1 and AgHL1 were characterized by IR and [...] Read more.
In this study, a novel silver(I) complex [Ag(HL1)2]NO3 (AgHL1) with coumarin derivative (3E)-3-(1-{[(pyridin-2-yl)methyl]amino}ethylidene)-3,4-dihydro-2H-benzopyran-2,4-dione (HL1) was prepared. The compounds HL1 and AgHL1 were characterized by IR and NMR spectroscopy, elemental analysis, and single crystal X-ray structural analysis. Specifically, the single crystal X-ray analysis determined the structures of both compounds HL1 and AgHL1 in their solid state, while NMR spectroscopy was used for structural determination in a solution. The HL1 proved to be a monodentate ligand and is coordinated to the Ag(I) atom through a nitrogen atom from the 2-picolylamine fragment. In the complex AgHL1, two molecules of neutral HL1 are coordinated forming a nearly linear N-Ag-N arrangement. An uncoordinated nitrate anion balances the positive charge of the complex cation. NMR spectroscopy also confirmed the stability of AgHL1 in DMSO-d6 for 3 days. In vitro cytotoxicity of HL1 and AgHL1 was performed over two cancerous cell lines A549 and HT-29 and their selectivity was verified on a healthy CCD-18Co cell line. AgHL1 exhibited low anticancer nonselective activity while the ligand was inactive. Also, the complex shows better antimicrobial activity than the positive controls on the Pseudomonas aeruginosa standard and clinical strain as well as on the tested molds. Full article
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10 pages, 1332 KB  
Article
Structural and Biological Studies of Bioactive Silver(I) Complexes with Coumarin Acid Derivatives
by Anna Wolska, Aleksandra Drzewiecka-Antonik, Cristina Aparecida Barboza, Marta Struga, Joanna Stefanska, Pawel Rejmak and Marcin Klepka
Molecules 2024, 29(21), 4993; https://doi.org/10.3390/molecules29214993 - 22 Oct 2024
Cited by 2 | Viewed by 1700
Abstract
Two new Ag(I) complexes with coumaric carboxylic acid derivatives have been synthesized. Structural studies of these noncrystalline complexes have been performed using a methodology that combines laboratory and synchrotron techniques, supported by density functional theory calculations. The arrangement of ligands around the Ag(I) [...] Read more.
Two new Ag(I) complexes with coumaric carboxylic acid derivatives have been synthesized. Structural studies of these noncrystalline complexes have been performed using a methodology that combines laboratory and synchrotron techniques, supported by density functional theory calculations. The arrangement of ligands around the Ag(I) cation has been refined using infrared, extended X-ray absorption fine structure, and X-ray absorption near edge structure spectroscopies. Different coordination modes of carboxylate ligands are observed for the studied compounds. Carboxylate bridges are characteristic for the Ag(I) complex with 4-oxo-4H-1-benzopyran-2-carboxylic acid (1), while a bidentate chelating motif was found for the complex with 2-oxo-2H-1-benzopyran-3-carboxylic acid (2). Additionally, the carbonyl oxygen atom of the coumarin ring coordinates to the silver cation in complex 2, while it is inactive in complex 1. Antimicrobial evaluation has been performed for both compounds. The complexes show activity against selected bacteria as well as Candida yeast. This activity is slightly lower for bacteria and the same or higher for Candida in relation to the reference substances: ciprofloxacin or fluconazole. Full article
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16 pages, 36857 KB  
Review
Defense Molecules of the Invasive Plant Species Ageratum conyzoides
by Hisashi Kato-Noguchi and Midori Kato
Molecules 2024, 29(19), 4673; https://doi.org/10.3390/molecules29194673 - 1 Oct 2024
Cited by 15 | Viewed by 5028
Abstract
Ageratum conyzoides L. is native to Tropical America, and it has naturalized in many other tropical, subtropical, and temperate countries in South America, Central and Southern Africa, South and East Asia, Eastern Austria, and Europe. The population of the species has increased dramatically [...] Read more.
Ageratum conyzoides L. is native to Tropical America, and it has naturalized in many other tropical, subtropical, and temperate countries in South America, Central and Southern Africa, South and East Asia, Eastern Austria, and Europe. The population of the species has increased dramatically as an invasive alien species, and it causes significant problems in agriculture and natural ecosystems. The life history traits of Ageratum conyzoides, such as its short life cycle, early reproductive maturity, prolific seed production, and high adaptive ability to various environmental conditions, may contribute to its naturalization and increasing population. Possible evidence of the molecules involved in the defense of Ageratum conyzoides against its natural enemies, such as herbivore insects and fungal pathogens, and the allelochemicals involved in its competitive ability against neighboring plant species has been accumulated in the literature. The volatiles, essential oils, extracts, residues, and/or rhizosphere soil of Ageratum conyzoides show insecticidal, fungicidal, nematocidal, and allelopathic activity. The pyrrolizidine alkaloids lycopsamine and echinatine, found in the species, are highly toxic and show insecticidal activity. Benzopyran derivatives precocenes I and II show inhibitory activity against insect juvenile hormone biosynthesis and trichothecene mycotoxin biosynthesis. A mixture of volatiles emitted from Ageratum conyzoides, such as β-caryophyllene, β-bisabolene, and β-farnesene, may work as herbivore-induced plant volatiles, which are involved in the indirect defense function against herbivore insects. Flavonoids, such as nobiletin, eupalestin, 5′-methoxynobiletin, 5,6,7,3′,4′,5′-hexamethoxyflavone, and 5,6,8,3,4′,5′-hexamethoxyflavone, show inhibitory activity against the spore germination of pathogenic fungi. The benzoic acid and cinnamic acid derivatives found in the species, such as protocatechuic acid, gallic acid, p-coumaric acid, p-hydroxybenzoic acid, and ferulic acid, may act as allelopathic agents, causing the germination and growth inhibition of competitive plant species. These molecules produced by Ageratum conyzoides may act as defense molecules against its natural enemies and as allelochemicals against neighboring plant species, and they may contribute to the naturalization of the increasing population of Ageratum conyzoides in new habitats as an invasive plant species. This article presents the first review focusing on the defense function and allelopathy of Ageratum conyzoides. Full article
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11 pages, 2989 KB  
Article
The Discovery of Acremochlorins O-R from an Acremonium sp. through Integrated Genomic and Molecular Networking
by Ge Cui, Luning Zhou, Hanwei Liu, Xuan Qian, Pengfei Yang, Leisha Cui, Pianpian Wang, Dehai Li, Jaclyn M. Winter and Guangwei Wu
J. Fungi 2024, 10(5), 365; https://doi.org/10.3390/jof10050365 - 20 May 2024
Cited by 4 | Viewed by 2806
Abstract
The fermentation of a soil-derived fungus Acremonium sp. led to the isolation of thirteen ascochlorin congeners through integrated genomic and Global Natural Product Social (GNPS) molecular networking. Among the isolated compounds, we identified two unusual bicyclic types, acremochlorins O (1) and [...] Read more.
The fermentation of a soil-derived fungus Acremonium sp. led to the isolation of thirteen ascochlorin congeners through integrated genomic and Global Natural Product Social (GNPS) molecular networking. Among the isolated compounds, we identified two unusual bicyclic types, acremochlorins O (1) and P (2), as well as two linear types, acremochlorin Q (3) and R (4). Compounds 1 and 2 contain an unusual benzopyran moiety and are diastereoisomers of each other, the first reported for the ascochlorins. Additionally, we elucidated the structure of 5, a 4-chloro-5-methylbenzene-1,3-diol with a linear farnesyl side chain, and confirmed the presence of eight known ascochlorin analogs (613). The structures were determined by the detailed interpretation of 1D and 2D NMR spectroscopy, MS, and ECD calculations. Compounds 3 and 9 showed potent antibacterial activity against Staphylococcus aureus and Bacillus cereus, with MIC values ranging from 2 to 16 μg/mL. Full article
(This article belongs to the Special Issue Fungal Metabolism in Filamentous Fungi: 2nd Edition)
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18 pages, 3815 KB  
Article
Saturation Transfer Difference NMR and Molecular Docking Interaction Study of Aralkyl-Thiodigalactosides as Potential Inhibitors of the Human-Galectin-3 Protein
by Fanni Hőgye, László Bence Farkas, Álex Kálmán Balogh, László Szilágyi, Samar Alnukari, István Bajza, Anikó Borbás, Krisztina Fehér, Tünde Zita Illyés and István Timári
Int. J. Mol. Sci. 2024, 25(3), 1742; https://doi.org/10.3390/ijms25031742 - 1 Feb 2024
Cited by 5 | Viewed by 3396
Abstract
Human Galectin-3 (hGal-3) is a protein that selectively binds to β-galactosides and holds diverse roles in both normal and pathological circumstances. Therefore, targeting hGal-3 has become a vibrant area of research in the pharmaceutical chemistry. As a step towards the [...] Read more.
Human Galectin-3 (hGal-3) is a protein that selectively binds to β-galactosides and holds diverse roles in both normal and pathological circumstances. Therefore, targeting hGal-3 has become a vibrant area of research in the pharmaceutical chemistry. As a step towards the development of novel hGal-3 inhibitors, we synthesized and investigated derivatives of thiodigalactoside (TDG) modified with different aromatic substituents. Specifically, we describe a high-yielding synthetic route of thiodigalactoside (TDG); an optimized procedure for the synthesis of the novel 3,3′-di-O-(quinoline-2-yl)methyl)-TDG and three other known, symmetric 3,3′-di-O-TDG derivatives ((naphthalene-2yl)methyl, benzyl, (7-methoxy-2H-1-benzopyran-2-on-4-yl)methyl). In the present study, using competition Saturation Transfer Difference (STD) NMR spectroscopy, we determined the dissociation constant (Kd) of the former three TDG derivatives produced to characterize the strength of the interaction with the target protein (hGal-3). Based on the Kd values determined, the (naphthalen-2-yl)methyl, the (quinolin-2-yl)methyl and the benzyl derivatives bind to hGal-3 94, 30 and 24 times more strongly than TDG. Then, we studied the binding modes of the derivatives in silico by molecular docking calculations. Docking poses similar to the canonical binding modes of well-known hGal-3 inhibitors have been found. However, additional binding forces, cation–π interactions between the arginine residues in the binding pocket of the protein and the aromatic groups of the ligands, have been established as significant features. Our results offer a molecular-level understanding of the varying affinities observed among the synthesized thiodigalactoside derivatives, which can be a key aspect in the future development of more effective ligands of hGal-3. Full article
(This article belongs to the Special Issue Application of NMR Spectroscopy in Biomolecules)
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14 pages, 6154 KB  
Article
Comparative Metabolomics Study of Four Kinds of Xihu Longjing Tea Based on Machine Fixing and Manual Fixing Methods
by Hongchun Cui, Yuxiao Mao, Yun Zhao, Haitao Huang, Junfeng Yin, Jizhong Yu and Jianyong Zhang
Foods 2023, 12(24), 4486; https://doi.org/10.3390/foods12244486 - 14 Dec 2023
Cited by 7 | Viewed by 3079
Abstract
China Xihu Longjing tea is famous for its good flavor and quality. However, information on its related metabolites, except for flavonoids, is largely deficient. Different processing methods for China Xihu Longjing tea fixing—by machines at both the first and second step (A1), first [...] Read more.
China Xihu Longjing tea is famous for its good flavor and quality. However, information on its related metabolites, except for flavonoids, is largely deficient. Different processing methods for China Xihu Longjing tea fixing—by machines at both the first and second step (A1), first step by machine and second step by hand (A2), first step by hand and second step by machine (A3), and by hand at both the first and second step (A4)—were compared using a UHPLC–QE–MS-based metabolomics approach. Liquid chromatography–mass spectrometry was used to analyze the metabolic profiles of the processed samples. A total of 490 metabolites (3 alkaloids, 3 anthracenes, 15 benzene and substituted derivatives, 2 benzopyrans, 13 coumarins and derivatives, 128 flavonoids, 4 furanoid lignans, 16 glycosides and derivatives, 5 indoles and derivatives, 18 isocoumarins and derivatives, 4 chalcones and dihydrochalcones, 4 naphthopyrans, 3 nucleosides, 78 organic acids and derivatives, 55 organooxygen compounds, 5 phenols, 109 prenol lipids, 3 saccharolipids, 3 steroids and steroid derivatives, and 17 tannins) were identified. The different metabolic profiles were distinguished using PCA and OPLS-DA. There were differences in the types and contents of the metabolites, especially flavonoids, furanoid lignans, glycosides and derivatives, organic acids and derivatives, and organooxygen compounds. There was a positive correlation between flavonoid metabolism and amino acid metabolism. However, there was a negative correlation between flavonoid metabolism and amino acid metabolism, which had the same trend as prenol lipid metabolism and tannins. This study provides new valuable information regarding differences in the metabolite profile of China Xihu Longjing tea processed based on machine fixing and on manual fixing methods. Full article
(This article belongs to the Special Issue Tea: Processing Techniques, Flavor Chemistry and Health Benefits)
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16 pages, 6583 KB  
Article
Essential Rule Derived from Thermodynamics and Kinetics Studies of Benzopyran Compounds
by Baolong Chen, Xin Hu and Xiaoqing Zhu
Molecules 2023, 28(24), 8039; https://doi.org/10.3390/molecules28248039 - 11 Dec 2023
Cited by 1 | Viewed by 2395
Abstract
Compounds with benzopyran as the core structure play an important role in the total synthesis of antioxidants, drugs, and natural products. Herein, the thermodynamic data of benzopyran compounds and their intermediates were measured and calculated by combining thermodynamics with kinetics. The mechanism of [...] Read more.
Compounds with benzopyran as the core structure play an important role in the total synthesis of antioxidants, drugs, and natural products. Herein, the thermodynamic data of benzopyran compounds and their intermediates were measured and calculated by combining thermodynamics with kinetics. The mechanism of reactions between four benzopyran compounds and organic hydride acceptors was proven to be a one-step hydride transfer. The thermodynamic properties of these compounds and their corresponding intermediates were elucidated. The rationality and accuracy of the electrochemical measurement method were proved. Furthermore, the essential rule of unique structures being present between the C–H bond and para-substituent constants on the benzene ring, as shown in previous studies, was investigated. A simultaneous correlation between thermodynamics and kinetics was found for the hydride transfer reaction, in which the reaction site is connected with the substituent through the benzene ring, a double bond, or a N atom. The likely reason for the correlation between thermodynamic and kinetic is that the benzene ring, double bond, or N atom have the role of transferring the electronic effect. This finding can be applied to the calculation of the activation energy of hydride self-exchange reactions, the prediction of kinetic isotope effects, and explorations of selective reduction processes of hydride transfer in such organic hydride compounds. Full article
(This article belongs to the Section Organic Chemistry)
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14 pages, 4913 KB  
Article
A Comparative Study of Tumor-Specificity and Neurotoxicity between 3-Styrylchromones and Anti-Cancer Drugs
by Tomoyuki Abe, Hiroshi Sakagami, Shigeru Amano, Shin Uota, Kenjiro Bandow, Yoshihiro Uesawa, Shiori U, Hiroki Shibata, Yuri Takemura, Yu Kimura, Koichi Takao, Yoshiaki Sugita, Akira Sato, Sei-ichi Tanuma and Hiroshi Takeshima
Medicines 2023, 10(7), 43; https://doi.org/10.3390/medicines10070043 - 14 Jul 2023
Cited by 3 | Viewed by 3111
Abstract
Background. Many anti-cancer drugs used in clinical practice cause adverse events such as oral mucositis, neurotoxicity, and extravascular leakage. We have reported that two 3-styrylchromone derivatives, 7-methoxy-3-[(1E)-2-phenylethenyl]-4H-1-benzopyran-4-one (Compound A) and 3-[(1E)-2-(4-hydroxyphenyl)ethenyl]-7-methoxy-4H-1-benzopyran-4-one (Compound B), [...] Read more.
Background. Many anti-cancer drugs used in clinical practice cause adverse events such as oral mucositis, neurotoxicity, and extravascular leakage. We have reported that two 3-styrylchromone derivatives, 7-methoxy-3-[(1E)-2-phenylethenyl]-4H-1-benzopyran-4-one (Compound A) and 3-[(1E)-2-(4-hydroxyphenyl)ethenyl]-7-methoxy-4H-1-benzopyran-4-one (Compound B), showed the highest tumor-specificity against human oral squamous cell carcinoma (OSCC) cell lines among 291 related compounds. After confirming their superiority by comparing their tumor specificity with newly synthesized 65 derivatives, we investigated the neurotoxicity of these compounds in comparison with four popular anti-cancer drugs. Methods: Tumor-specificity (TSM, TSE, TSN) was evaluated as the ratio of mean CC50 for human normal oral mesenchymal (gingival fibroblast, pulp cell), oral epithelial cells (gingival epithelial progenitor), and neuronal cells (PC-12, SH-SY5Y, LY-PPB6, differentiated PC-12) to OSCC cells (Ca9-22, HSC-2), respectively. Results: Compounds A and B showed one order of magnitude higher TSM than newly synthesized derivatives, confirming its prominent tumor-specificity. Docetaxel showed one order of magnitude higher TSM, but two orders of magnitude lower TSE than Compounds A and B. Compounds A and B showed higher TSM, TSE, and TSN values than doxorubicin, 5-FU, and cisplatin, damaging OSCC cells at concentrations that do not affect the viability of normal epithelial and neuronal cells. QSAR prediction based on the Tox21 database suggested that Compounds A and B may inhibit the signaling pathway of estrogen-related receptors. Full article
(This article belongs to the Section New Drugs Exploration and Development)
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