Search Results (117)

Root rot, mainly caused by Fusarium oxysporum, is one of the most destructive diseases and leads to significant economic loss of Astragalus membranaceus. To develop an effective strategy for the management of this serious disease, a bacterial strain 2-12 was screened from A. membranaceus rhizosphere soil and identified as Bacillus paralicheniformis based on the phylogenetic analyses of gyrase subunit B gene (gyrB) and RNA polymerase gene (rpoB) sequences. Interestingly, the volatile organic compounds (VOCs) produced by B. paralicheniformis 2-12 exhibited potent antifungal activities against F. oxysporum, as well as fifteen other plant pathogens. Under scanning electron microscopy observation, hyphae treated with the VOCs exhibited abnormal variation such as distortion, twist, and vesiculation, leading to distinctive protoplasm shrinkage. After treatment with B. paralicheniformis 2-12 VOCs, the lesion diameter and disease incidence both reduced significantly compared to control (p < 0.05), thus demonstrating prominent biological efficiency. Moreover, B. paralicheniformis 2-12 VOCs were composed of 17 VOCs, including 9 alkanes, 3 alcohols, 3 acids and esters, 1 aromatic compound, and 1 alkyne compound. A total of 1945 DEGs, including 1001 up-regulated and 944 down-regulated genes, were screened via transcriptome analysis. These DEGs were mainly associated with membranes and membrane parts, amino acid metabolism, and lipid metabolism. The findings in this work strongly suggested that B. paralicheniformis 2-12 VOCs could be applied as a new candidate for the control of A. membranaceus root rot. Full article

The volatile organic compounds (VOCs) produced by K. cowanii Ch1 play a significant role in the inhibition of the mycelial growth of phytopathogen strains. As a continuation of our previous studies, we aim to elucidate the mechanisms of the responses of K. cowanii Ch1 against S. rolfsii during a colonization competence interaction in the presence and absence of a mixture of bacterial VOCs under in vitro conditions. The results of this study showed that, in the absence of bacterial VOCs, K. cowanii Ch1 cannot compete against S. rolfsii, and the RNA-Seq analysis revealed the differential expression of genes related to the oxidative stress response in K. cowanii Ch1 for survival. However, in the presence of bacterial VOCs, an interesting phenotypical response was observed in K. cowanii Ch1, resulting in the mycelial growth inhibition of S. rolfsii. The upregulated genes were related to the siderophore-mediated iron transport system, zinc ion transport system, antibiotic biosynthesis monooxygenase, carbohydrate metabolism, polyketide synthase modules, and related proteins, and katG was probably related to the phenotype resulting in the formation of gas bubbles by K. cowanii. In addition, the VOC profile analyzed at 36 h for bacterial growth revealed a cocktail with an ability to increase the competence of K. cowanii Ch1 against S. rolfsii in vitro and in vivo. This study provides evidence regarding the key role that VOCs play during the colonization competition involving K. cowanii Ch1, the comprehension of which may enable the development of new biocontrol strategies. Full article

This study presents a proof-of-concept evaluation of optimized whole-cell biosensors designed for the real-time detection of crop infections. Genetically engineered luminescent bacterial strains were used to detect volatile organic compounds (VOCs) emitted by crops during spoilage. Key factors investigated include bacterial uniformity, nutrient supply, and temperature effects. The results demonstrated that lower temperatures (+4 °C) yielded higher sensor sensitivity and prolonged bacterial viability. A proof-of-concept evaluation was conducted in storage-like conditions, showing effective infection detection in potatoes. These findings underscore the potential of whole-cell-based biosensors for monitoring postharvest production in cold storage environments. Full article

Bioaerosols have risen as pivotal constituents of airborne particles. Closely intertwined with the agricultural domain, these particles exert a significant influence on crops through the dissemination of various microorganisms that modulate crop growth dynamics, adaptive responses to environmental stimuli, and the nutritional profile of agricultural products. As the main vector, airborne particles are at the forefront in the transmission of plant pathogens. Therefore, this review explains the main factors influencing their composition in agricultural settings and their spreading. Furthermore, it elucidates the complex bioaerosol-based communication networks, including bacteria–bacteria, bacteria–plant, and plant–plant interactions, mediated by specialized volatile organic compounds (VOCs) released by plants and bacterial volatile compounds (BVCs) produced by bacteria. These compounds play a crucial role in synchronizing stress responses and facilitating adaptive processes. They serve as a pathway for influencing and regulating the behavior of both plants and microorganisms. Delving into their origin and dispersion, we assess the key methods for their collection and analysis while also comparing the strengths and weaknesses of various sampling techniques. The discussion also extends to delineating the roles of such particles in the formation of biodiversity. Central to this discourse is an in-depth exploration of their role in the agricultural context, particularly focusing on their potential utility in forecasting pathogen transmission and subsequent plant diseases. This review also highlights the importance of applying bioaerosol-based strategies in the promotion of sustainable agricultural practices, thus contributing to the advancement of ecological balance and food security, which remains a neglected area in scientific research. Full article

Oral diseases represent a significant global health and economic burden, necessitating the development of effective diagnostic tools. This study investigates the volatile organic compound (VOC) profiles of bacteria associated with dental caries and periodontal disease to explore their potential as diagnostic biomarkers. Four microbial strains—Streptococcus mutans (700610), Streptococcus sanguis (NCO 2863), Porphyromonas gingivalis (ATCC 33277), and Fusobacterium nucleatum (PK1594)—were cultured (N = 24), alongside intraoral samples (N = 60), from individuals with common oral diseases. Headspace VOCs were analyzed using gas chromatography-mass spectrometry (GC-MS), and statistical analyses were conducted by applying non-parametric Wilcoxon and Kruskal–Wallis tests. VOC identification was performed using the NIST14 database. Strain-specific VOC signatures were identified, with P. gingivalis and F. nucleatum exhibiting distinct profiles from each other and from Streptococcus strains. Comparative analysis of disease cohorts revealed statistically significant differences at multiple retention times between caries, gingivitis, and periodontitis. These findings suggest that VOC profiling enables differentiation between bacterial strains and disease phenotypes, supporting their potential application as diagnostic biomarkers for oral diseases. This study establishes a foundational framework for VOC-based diagnostic methodologies in dental pathology. Full article

Xiangxi Yellow Cattle, an indigenous Chinese livestock breed recognized for its exceptional nutrient composition and superior meat characteristics, has gained significant market preference among consumers. This investigation focused on evaluating physicochemical attributes, flavor development patterns, and bacterial population dynamics in chilled beef samples stored at 4 °C over an 8-day period. The research further examined interrelationships between meat parameters, predominant microbial species, and crucial aroma-active substances. Findings revealed a progressive elevation in lipid/protein oxidation levels, biogenic amine accumulation, and TVB-N values as microbial proliferation intensified toward the late storage phase. Microbial analysis demonstrated a final total viable count of 7.17 log10 (CFU/g), with bacterial community dominance distributed among Firmicutes (58.15%), Proteobacteria (29.56%), and Bacteroidota (12.05%). Notably, Brochothrix thermosphacta emerged as the primary spoilage organism in terminal storage phases. Volatile organic compounds (VOCs) in the beef during storage were analyzed, with a total of 66 compounds identified. The critical analysis identified 2,3-butanedione and 2-butanone as microbial metabolism-dependent substances showing strong correlations with meat quality parameters, emerging as freshness markers for beef evaluation. Importantly, the study highlighted the necessity for deeper investigation into microbial–VOC interactions, particularly considering the intricate bacterial ecosystems in aquatic environments. These outcomes enhance our understanding of spoilage mechanisms in Xiangxi Yellow Cattle beef while proposing practical approaches for microbial control in meat preservation systems. Full article

Lactic acid bacteria (LAB) fermentation has been claimed as an effective way of modifying the sensory properties of plant-based foods. However, not much has been published on the influence of different LAB strains on the flavour of the volatile organic compounds (VOCs) produced. Using a defined medium (DM) and proton-transfer-reaction time-of-flight mass spectrometry (PTR-ToF-MS), we assessed the VOCs produced by seven LAB strains, Levilactobacillus brevis WLP672 (LB672), Lactobacillus delbrueckii WLP677 (LD677), Pediococcus damnosus WLP661 (PD661), Lactiplantibacillus plantarum LP100 (LP100), Pediococcus pentosaceus PP100 (PP100), Pediococcus damnosus 5733 (PD5733), and Lentilactobacillus buchneri 5335 (LU5335), at three time points during fermentation (0, 7, and 14 days) at either 25 or 35 °C. Significant variations in VOC production were observed among LAB strains, growing in the same DM composition at either 25 °C or 35 °C. Specifically, the concentration of m/z 87.043 (t.i. diacetyl) was significantly (p < 0.05) higher at 7 days of fermentation at 35 °C by LP100, followed by PP100 at 35 °C and PD661 at 25 °C compared to the other strains at either 25 or 35 °C. The concentration of m/z 115.112 (t.i. 2-heptanone) was significantly (p < 0.05) higher at 7 days of fermentation at either 25 or 35 °C by LP100 compared to the other strains at all temperature and time points. The concentration of m/z 49.011 (t.i. methanethiol) was significantly (p < 0.05) higher after 7 days of fermentation at 35 °C by LB672 compared to the other strains at either 25 or 35 °C. The concentration of m/z 71.085 (t.i. 3-methyl butanol) was significantly (p < 0.05) higher after 7 days of fermentation at either 25 or 35 °C by PD661, LU5335, or PD5733 compared to the other strains studied. A notable increase in specific VOC concentrations was observed at 35 °C compared to 25 °C. This research demonstrates that LAB strains generate distinct VOC profiles in a DM based on strains and fermentation conditions. Therefore, this knowledge provides a basis for controlling and enhancing flavour in plant-based fermentations. Full article

The storage temperature is important for maintaining the quality of raw fish meat. The characteristics of ordinary muscle (OM) and dark muscle (DM) differ. This study aimed to clarify the effects of storage temperature (refrigeration, ice storage, and super-chilled (SC) storage) on the bacterial flora and quality (biochemical changes, volatile organic compounds (VOCs), and off-flavor development) of both muscles of yellowtail (Seriola quinqueradiata). SC storage effectively extended the shelf life of the dorsal part of ordinary muscle (OM) and DM by reducing bacterial proliferation, VOC changes, and off-flavor formation. However, their effects on the inhibition of trimethylamine (TMA) accumulation and lipid oxidation are limited. (E,E)-2,4-octadienal and (E,E)-3,5-octadien-2-one were identified as candidate markers of OM quality deterioration, whereas 1-hexanol was identified as a potential marker for DM. Alcohols, esters, and ketones are potential spoilage indicators of yellowtail muscles (OM and DM). Pseudomonas was the dominant spoilage bacterium in OM and DM across all storage conditions, with Acinetobacter, Brochothrix, and Shewanella appearing in later storage stages. These findings highlight the importance of storage at lower temperatures and understanding the dynamics of spoilage-causing bacteria and changes in VOCs in raw fish meat (OM and DM) to prevent spoilage and maintain meat quality. Full article

The global demand for legumes has grown significantly since the 1960s, due to their high protein content and environmental benefits. However, this growth could also facilitate the spread of seed-borne pathogens like Curtobacterium flaccumfaciens pv. flaccumfaciens (Cff). Cff is a Gram-positive bacterium causing bacterial wilt in common beans and poses substantial challenges in regard to its detection and management, due to its long latent period and xylemic nature. Traditional diagnostic methods have proven insufficient, highlighting the need for innovative approaches. This study explores the potential of volatile organic compounds (VOCs) produced by Cff to be used as diagnostic markers to prevent the spread of seed-borne pathogens. First, we analyzed the VOCs emitted by different Cff strains in vitro, identifying a unique blend of five major VOCs. Subsequently, we verified the presence of these VOCs in vivo in artificially infected Cannellino beans. Phenylmethanol and 2-methoxy-4-vinylphenol emerged as key diagnostic markers, differentiating Cff from other bacterial pathogens of beans, such as Pseudomonas savastanoi pv. phaseolicola and Xanthomonas phaseoli pv. phaseoli. Our findings suggest that VOC fingerprinting offers a non-invasive, effective method for the early detection of Cff, even in asymptomatic seeds. This innovative approach holds significant promise for improving seed-borne disease management and supporting the development of practical diagnostic tools for field applications. Further research should aim to enhance the sensitivity and specificity of VOC-based diagnostics, facilitating the rapid and accurate screening of plant materials at ports of entry. This would contribute to the sustainability and health of leguminous crop production. Full article

Better quality and odor of silage and normal microbial fermentation metabolism are mostly dependent on an appropriate moisture content. The purpose of this study was to determine the effects of different moisture content gradients (50, 60, 70, and 80%) on the bacterial community, odor, and quality of alfalfa silage at 60 days by using gas chromatography–mass spectrometry (GC–MS) and electronic nose, with six replicates per group. The results showed that there were significant differences in odor response intensity among all groups, among which the 80% group had the strongest reaction to terpenoids, sulfides, and nitrogen oxides. Similarly, the different volatile organic compounds (VOCs) were mainly terpenoids, alcohols, and ketones, such as pine, camphor, and menthol (e.g., carlin and levomenthol). The dominant bacterium was Enterococcus with higher fiber, pH, and ammonia nitrogen (NH₃-N) content but poorer quality and odor (p < 0.05). The differential VOCs in the 60% group were mainly heterocyclics, esters, and phenols with fruity, floral, and sweet odors such as 2-butylthiophene and acorone. Pediococcus and Lactiplantibacillus were the dominant bacteria, with higher crude protein (CP), water-soluble carbohydrates (WSC), and lactic acid (LA) contents, as well as better quality and odor (p < 0.05). The biosynthesis of terpenoids and steroids, biosynthesis of secondary metabolites, and biosynthesis of phenylpropanoids were the main metabolic pathways of differential VOCs. In conclusion, regulating moisture content can alter bacterial community and metabolites, which will encourage fermentation and enhance alfalfa silage quality and odor. Full article

The impact of macroalgae species on rumen function remains largely unexplored. This present study aimed to identify the biocompounds of the three types of marine macroalgae described: Macrocystis pyrifera (Brown), Ulva spp. (Lettuce), Mazzaella spp. (Red) and their effect on species-specific modulations of the rumen microbiome. The macroalgae were characterized using GC-MS. Twelve Rambouillet lambs were randomly assigned to one of four experimental diets (n = 3 per treatment): (a) control diet (CD); (b) CD + 5 g of Red algae; (c) CD + 5 g of Brown algae; and (d) CD + 5 g of Lettuce algae. After the lambs ended their fattening phase, they donated ruminal fluid for DNA extraction and 16S rRNA gene V3 amplicon sequencing. Results: The tagged 16S rRNA amplicon sequencing and statistical analysis revealed that the dominant ruminal bacteria shared by all four sample groups belonged to phyla Firmicutes and Bacteroidota. However, the relative abundance of these bacterial groups was markedly affected by diet composition. In animals fed with macroalgae, the fibrinolytic and cellulolytic bacteria Selenomonas was found in the highest abundance. The diversity in chemical composition among macroalgae species introduces a range of bioactive compounds, particularly VOCs like anethole, beta-himachalene, and 4-ethylphenol, which demonstrate antimicrobial and fermentation-modulating properties. Full article

Activated carbon is widely known for its porous structure and diverse surface functional groups, making it an effective adsorbent for removing various organic and inorganic pollutants from air and water. However, as a filtration material in air conditioning systems, activated carbon can also provide favorable conditions for microbial growth, potentially leading to the proliferation of microorganisms on its surface. These microorganisms, along with their metabolic products, can be released into indoor environments, posing potential health risks. This study employs molecular simulation to investigate the adsorption and release mechanisms of microorganisms and their volatile organic compound (VOC) metabolic products on activated carbon. Peptidoglycan (PDG) (as a representative bacterial cell wall component) and p-xylene (as a representative microbial metabolic product) were used as model compounds. The adsorption behavior of these compounds was simulated on activated carbon under different environmental conditions, including varying temperatures. The study found that activated carbon has a higher affinity for peptidoglycan than for p-xylene; at 303.15 K, the diffusion coefficients of peptidoglycan and p-xylene in activated carbon are 0.842 × 10⁻⁹ m²/s and 0.587 × 10⁻⁸ m²/s, respectively. Temperature plays an important role in affecting adsorption capacity; when the temperature rises by 10 K, the diffusion coefficients of peptidoglycan and p-xylene in activated carbon increase by 32.8% and 34.3%, respectively. These insights contribute to the development of efficient and health-conscious air purification materials, offering theoretical and practical guidance for optimizing the use of activated carbon in HVAC systems. Full article

Microbes produce various bioactive metabolites that can influence plant growth and stress tolerance. In this study, a plant growth-promoting rhizobacterium (PGPR), strain S14, was identified as Micrococcus luteus (designated as MlS14) using de novo whole-genome assembly. The MlS14 genome revealed major gene clusters for the synthesis of indole-3-acetic acid (IAA), terpenoids, and carotenoids. MlS14 produced significant amounts of IAA, and its volatile organic compounds (VOCs), specifically terpenoids, exhibited antifungal activity, suppressing the growth of pathogenic fungi. The presence of yellow pigment in the bacterial colony indicated carotenoid production. Treatment with MlS14 activated the expression of β-glucuronidase (GUS) driven by a promoter containing auxin-responsive elements. The application of MlS14 reshaped the root architecture of Arabidopsis seedlings, causing shorter primary roots, increased lateral root growth, and longer, denser root hairs; these characteristics are typically controlled by elevated exogenous IAA levels. MlS14 positively regulated seedling growth by enhancing photosynthesis, activating antioxidant enzymes, and promoting the production of secondary metabolites with reactive oxygen species (ROS) scavenging activity. Pretreatment with MlS14 reduced H₂O₂ and malondialdehyde (MDA) levels in seedlings under drought and heat stress, resulting in greater fresh weight during the post-stress period. Additionally, exposure to MlS14 stabilized chlorophyll content and growth rate in seedlings under salt stress. MlS14 transcriptionally upregulated genes involved in antioxidant defense and photosynthesis. Furthermore, genes linked to various hormone signaling pathways, such as abscisic acid (ABA), auxin, jasmonic acid (JA), and salicylic acid (SA), displayed increased expression levels, with those involved in ABA synthesis, using carotenoids as precursors, being the most highly induced. Furthermore, MlS14 treatment increased the expression of several transcription factors associated with stress responses, with DREB2A showing the highest level of induction. In conclusion, MlS14 played significant roles in promoting plant growth and stress tolerance. Metabolites such as IAA and carotenoids may function as positive regulators of plant metabolism and hormone signaling pathways essential for growth and adaptation to abiotic stress. Full article

In this study, for the first time, the volatile fraction from two domesticated Capsicum annuum accessions (“Paprika” and “Baklouti”) collected in Tunisia was investigated by two complementary analytical techniques, such as Solid-Phase Microextraction–Gas Chromatography/Mass Spectrometry (SPME-GC/MS) and Proton Transfer Reaction–Time-of-Flight–Mass Spectrometry (PTR-ToF-MS). The obtained results highlighted the presence of a high number of Volatile Organic Compounds (VOCs), including monoterpene and sesquiterpene compounds with α-curcumene, I-zingiberene, β-bisabolene and β-sesquiphellandrene as the major components. In addition, GC/MS was used to investigate the non-volatile chemical composition of the dried powders and their extracts, which were found to be rich in sulfur compounds, fatty acids and sugars. Eleven bacterial strains were chosen to assess the antimicrobial effectiveness of the extracts. The results showed that the extracts exhibited strain-dependent behavior, and the type strains displayed a greater susceptibility to the treatments, if compared to the wild strains, and, in particular, showed the best antimicrobial activity against Gram-positive bacteria, such as Listeria monocytogenes and Staphylococcus aureus. Full article

To investigate the dynamic changes and potential correlations between microbial diversity and volatile organic compounds (VOCs) during Chinese medium-temperature Daqu (MTD) manufacturing at different key stages, in this study, high-throughput sequencing (HTS) and gas chromatography–ion mobility spectrometry (GC–IMS) were employed to analyze the microbial diversity and VOCs of MTD, respectively. The results showed that Weissella, Staphylococcus, Thermoactinomyces, Kroppenstedtia, and Lactobacillus were the dominant bacterial genera, while Aspergillus, Alternaria, Thermoascus, Thermomyces, Wickerhamomyces, and Saccharomyces were the dominant fungal genera. A total of 61 VOCs were detected by GC–IMS, among which, 13 differential VOCs (VIP > 1) were identified, that could be used as potential biomarkers to judge the fermentation stage of MTD. Kroppenstedtia and Saccharopolyspora were positively correlated with 3-methyl-2-butenal and 2,2,4,6,6-pentamethylheptane-D, respectively, and both of these were positively correlated with butanal-D. Acetobacter, Streptomyces, and lactic acid bacteria (LAB) including Leuconostoc, Pediococcus, Weissella, and Lactobacillus were negatively correlated with their associated VOCs, while fungi were generally positively correlated with VOCs. Wickerhamomyces, Saccharomyces, and Candida were positively correlated with butan-2-one-M. This study provides a theoretical basis for explaining the mechanisms of MTD flavor formation and screening functional microorganisms to improve the quality of MTD. Full article