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Search Results (2,038)

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11 pages, 925 KB  
Article
Plant Growth Regulators on ‘Letícia’ Plum Fruit Set, Yield Performance and Fruit Quality Parameters in Southern Brazil
by Sabrina Baldissera, Alex Felix Dias, Daiana Petry Rufato, Flávia Lourenço da Silva, André Berner Armbrust, Amauri Bogo and Leo Rufato
Agriculture 2025, 15(22), 2348; https://doi.org/10.3390/agriculture15222348 - 11 Nov 2025
Abstract
Plant growth regulators (PGRs) such as aminoethoxyvinylglycine (AVG), 1-methylcyclopropene (1-MCP), and thidiazuron (TDZ) are widely used to improve fruit set and quality in stone fruits. This study evaluated the effects of these PGRs on fruit set, yield performance, and fruit quality parameters of [...] Read more.
Plant growth regulators (PGRs) such as aminoethoxyvinylglycine (AVG), 1-methylcyclopropene (1-MCP), and thidiazuron (TDZ) are widely used to improve fruit set and quality in stone fruits. This study evaluated the effects of these PGRs on fruit set, yield performance, and fruit quality parameters of the Japanese plum cultivar ‘Leticia’ under the edaphoclimatic conditions of the highland region of southern Brazil during the 2021/22 and 2022/23 growing seasons. The treatments (AVG, MCP, and TDZ) were applied in full bloom in a randomized complete block design with four replications, and the data from both seasons were analyzed by principal component analysis (PCA). All PGRs significantly affected fruit set, yield performance, and fruit quality parameters. The strongest associations were found with 182 mg L−1 TDZ for fruit set, and with 62.5 mg L−1 and 125 mg L−1 AVG, and 21.43 mg L−1 1-MCP for yield performance-related trails. Applications of 125 mg L−1 AVG, 21.43 mg L−1 1-MCP, and 182 mg L−1 TDZ produced fruits with larger diameters and higher fresh weights. The PCA results indicated that TDZ at 182 mg L−1 was closely associated with fruit set and yield performance, suggesting a strong multivariate relationship among these parameters and demonstrating its potential to enhance the productivity of ‘Leticia’ plum under the edaphoclimatic conditions of southern Brazil during the 2021/2022 and 2022/2023 growing seasons. Full article
(This article belongs to the Section Crop Production)
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14 pages, 918 KB  
Article
Dynamics of Urine Metabolomics and Tubular Inflammatory Cytokines in Type 1 Diabetes Across Disease Durations
by Mei-Shiuan Yu, Chih-Yung Chiu, Fu-Sung Lo, Wei-Cheng Lin, Li-Jia Wu, Cih-Yi Yen and Mei-Ching Yu
Metabolites 2025, 15(11), 734; https://doi.org/10.3390/metabo15110734 - 10 Nov 2025
Abstract
Background/Objectives: Type 1 diabetes (T1D) is a chronic autoimmune disease characterized by sustained inflammation, leading to diabetic kidney disease (DKD). This study investigated urinary tubular injury biomarkers and metabolomic profiles in relation to albuminuria and renal function across varying durations of T1D. [...] Read more.
Background/Objectives: Type 1 diabetes (T1D) is a chronic autoimmune disease characterized by sustained inflammation, leading to diabetic kidney disease (DKD). This study investigated urinary tubular injury biomarkers and metabolomic profiles in relation to albuminuria and renal function across varying durations of T1D. Methods: A cross-sectional analysis was conducted in 247 youth-onset T1D patients categorized by disease duration: short ≤ 5 years (T1D-S, n = 62), medium 6–10 years (T1D-M, n = 67), and long > 10 years (T1D-L, n = 118). Urinary cytokines (MCP-1, KIM-1, NGAL) were measured by ELISA. Metabolomic profiling was performed using 1H-NMR spectroscopy. Results: Urinary MCP-1/Cr, KIM-1/Cr, and NGAL/Cr levels were significantly elevated in T1D patients compared with non-diabetic controls, but did not correlate with disease duration. Metabolomic profiling identified distinct urinary signatures across T1D duration. Specifically, N-acetylcysteine (NAC) and N-delta-acetylornithine (NAO) increased progressively, while N-acetylaspartate (NAA) and pyruvic acid decreased with longer disease duration. These four metabolites remained statistically significant after both based on Mann–Whitney tests with false discovery rate (FDR) correction (q < 0.05) and application of a conservative alpha threshold (p < 0.01), suggesting potential disruptions in amino acid and carbohydrate metabolism. Conclusions: Urinary biomarkers (MCP-1/Cr, NGAL/Cr, and KIM-1/Cr) are sensitive indicators of subclinical kidney dysfunction in T1D patients, often preceding albuminuria. Alterations in amino acid-related metabolites (NAC, NAA, and NAO) and pyruvate highlight possible metabolic disturbances associated with T1D duration and oxidative stress. However, given the cross-sectional design, longitudinal studies are needed to confirm causality and clarify their predictive value in DKD progression. Full article
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16 pages, 1689 KB  
Article
Dual Roles of CD147 in Regulating THP-1 Monocyte Migration and MCP-1-Induced Inflammatory Responses
by Nutjeera Intasai, Kanokporn Sornsuwan, On-anong Juntit, Thanathat Pamonsupornwichit, Kanyarat Thongheang, Phatcharida Jantaree and Chatchai Tayapiwatana
Int. J. Mol. Sci. 2025, 26(22), 10850; https://doi.org/10.3390/ijms262210850 - 8 Nov 2025
Viewed by 184
Abstract
Cluster of Differentiation (CD) 147, a transmembrane glycoprotein, plays a critical role in monocyte function by regulating invasion, migration and cytokine production. This study explored the impact of CD147 on monocyte chemotaxis and inflammatory responses following monocyte chemoattractant protein-1 (MCP-1) modulation using CD147 [...] Read more.
Cluster of Differentiation (CD) 147, a transmembrane glycoprotein, plays a critical role in monocyte function by regulating invasion, migration and cytokine production. This study explored the impact of CD147 on monocyte chemotaxis and inflammatory responses following monocyte chemoattractant protein-1 (MCP-1) modulation using CD147 knockout (CD147KO) THP-1 monocytes. CD147KO THP-1 cells exhibited significantly enhanced migration towards MCP-1 and chemoattractants secreted by MDA-MB-231 breast cancer cells compared to wild-type (WT) THP-1 cells, while surface expression of the adhesion molecule CD44 remained unchanged. Despite their increased migration, CD147KO cells showed no significant differences in CC chemokine receptor type 1 (CC1) or CC chemokine receptor type 2 (CCR2) protein expression. Upon MCP-1 stimulation, CD147KO THP-1 monocytes exhibited elevated mRNA expression of interleukin (IL)-6 and IL-10, accompanied by a reduction in tumor necrosis factor alpha (TNF-α) at higher MCP-1 concentrations. IL-6 upregulation in CD147KO THP-1 monocytes appears to be a candidate mediator of their enhanced migratory capacity. In summary, this study highlights the dual role of CD147 as a potential checkpoint in regulating THP-1 monocyte migration, with its function varying depending on the context and microenvironment. Additionally, CD147KO THP-1 monocytes exhibited a shift in the balance between pro- and anti-inflammatory cytokine responses. Full article
(This article belongs to the Section Molecular Immunology)
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19 pages, 772 KB  
Article
A Systematic Intelligent Optimization Framework for a Sustained-Release Formulation Design
by Yuchao Qiao, Yijia Wu, Mengchen Han, Hao Ren, Yu Cui, Xuchun Wang, Yiming Lou, Chongqi Hao, Quan Feng and Lixia Qiu
Pharmaceutics 2025, 17(11), 1419; https://doi.org/10.3390/pharmaceutics17111419 - 1 Nov 2025
Viewed by 363
Abstract
Objectives: This study proposes a systematic strategy for optimizing sustained-release formulations using mixture experiments. Methods: Model variables were identified and screened via LASSO regression, Smoothly Clipped Absolute Deviation (SCAD), and Minimax Concave Penalty (MCP), leading to the construction of a quadratic [...] Read more.
Objectives: This study proposes a systematic strategy for optimizing sustained-release formulations using mixture experiments. Methods: Model variables were identified and screened via LASSO regression, Smoothly Clipped Absolute Deviation (SCAD), and Minimax Concave Penalty (MCP), leading to the construction of a quadratic inference function-based objective model. Using this model, three multi-objective optimization algorithms—NSGA-III, MOGWO, and NSWOA—were employed to generate a Pareto-optimal solution set. Solutions were further evaluated through the entropy weight method combined with TOPSIS to reduce subjective bias. Results: The MCP-screened model demonstrated strong fit (AIC = 19.8028, BIC = 45.2951) and suitability for optimization. Among the Pareto-optimal formulations, formulation 45, comprising HPMC K4M (38.42%), HPMC K100LV (13.51%), MgO (6.28%), lactose (17.07%), and anhydrous CaHPO4 (7.52%), exhibited superior performance, achieving cumulative release rates of 22.75%, 64.98%, and 100.23% at 2, 8, and 24 h, respectively. Compared with the original formulation, drug release was significantly improved across all time points. Conclusions: This integrated workflow effectively accounted for component interactions and repeated measurements, providing a robust and scientifically grounded approach for optimizing multi-component sustained-release formulations. Full article
(This article belongs to the Section Physical Pharmacy and Formulation)
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22 pages, 3019 KB  
Article
Probabilistic Forecast for Real-Time Control of Rainwater Pollutant Loads in Urban Environments
by Annalaura Gabriele, Federico Di Palma, Ezio Todini and Rudy Gargano
Hydrology 2025, 12(11), 289; https://doi.org/10.3390/hydrology12110289 - 1 Nov 2025
Viewed by 206
Abstract
Advanced wastewater management systems are necessary to effectively direct severely contaminated initial rainwater runoff to the treatment facility only when pollutant concentrations are elevated during the initial flush event, thereby reducing the risk of water pollution caused by urban drainage systems. This necessitates [...] Read more.
Advanced wastewater management systems are necessary to effectively direct severely contaminated initial rainwater runoff to the treatment facility only when pollutant concentrations are elevated during the initial flush event, thereby reducing the risk of water pollution caused by urban drainage systems. This necessitates the implementation of intelligent decision-making systems, forecasting, and monitoring. However, conventional “deterministic” forecasts are inadequate for making informed decisions in the presence of uncertainty regarding future values, despite the fact that a variety of modeling techniques have been employed to predict total suspended solids at specific locations. The literature contains a number of “probabilistic” forecasting approaches that take into account uncertainty. Among them, this paper proposes the Model Conditional Processor (MCP), which is well-known in hydrological, hydraulic, and climatological fields, to forecast the predictive probability density of total suspended solids based on one or more deterministic predictions. This is intended to address the issue. The decision to divert the first flush is subsequently guided by the predictive density and probabilistic thresholds. The effective implementation of the MCP approach is demonstrated in a real case study that is part of the USGS’s extensive and long-term stormwater monitoring initiative, based on observations of a real stormwater drainage system. The results obtained confirm that probabilistic approaches are suitable instruments for enhancing decision-making. Full article
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26 pages, 5481 KB  
Article
MCP-X: An Ultra-Compact CNN for Rice Disease Classification in Resource-Constrained Environments
by Xiang Zhang, Lining Yan, Belal Abuhaija and Baha Ihnaini
AgriEngineering 2025, 7(11), 359; https://doi.org/10.3390/agriengineering7110359 - 1 Nov 2025
Viewed by 232
Abstract
Rice, a dietary staple for over half of the global population, is highly susceptible to bacterial and fungal diseases such as bacterial blight, brown spot, and leaf smut, which can severely reduce yields. Traditional manual detection is labor-intensive and often results in delayed [...] Read more.
Rice, a dietary staple for over half of the global population, is highly susceptible to bacterial and fungal diseases such as bacterial blight, brown spot, and leaf smut, which can severely reduce yields. Traditional manual detection is labor-intensive and often results in delayed intervention and excessive chemical use. Although deep learning models like convolutional neural networks (CNNs) achieve high accuracy, their computational demands hinder deployment in resource-limited agricultural settings. We propose MCP-X, an ultra-compact CNN with only 0.21 million parameters for real-time, on-device rice disease classification. MCP-X integrates a shallow encoder, multi-branch expert routing, a bi-level recurrent simulation encoder–decoder (BRSE), an efficient channel attention (ECA) module, and a lightweight classifier. Trained from scratch, MCP-X achieves 98.93% accuracy on PlantVillage and 96.59% on the Rice Disease Detection Dataset, without external pretraining. Mechanistically, expert routing diversifies feature branches, ECA enhances channel-wise signal relevance, and BRSE captures lesion-scale and texture cues—yielding complementary, stage-wise gains confirmed through ablation studies. Despite slightly higher FLOPs than MobileNetV2, MCP-X prioritizes a minimal memory footprint (~1.01 MB) and deployability over raw speed, running at 53.83 FPS (2.42 GFLOPs) on an RTX A5000. It achieves 16.7×, 287×, 420×, and 659× fewer parameters than MobileNetV2, ResNet152V2, ViT-Base, and VGG-16, respectively. When integrated into a multi-resolution ensemble, MCP-X attains 99.85% accuracy, demonstrating exceptional robustness across controlled and field datasets while maintaining efficiency for real-world agricultural applications. Full article
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17 pages, 2026 KB  
Article
Fruit Maturity and 1-Methylcyclopropene Influence Quality Retention and Chlorophyll Degradation in ‘Golden Ball’ Apples During Cold Storage
by Nay Myo Win, Jong-Taek Park, Jeong-Hee Kim, Young-Soo Kim, Jung-Geun Kwon, In-Kyu Kang, Jingi Yoo and Dagyeong Kwon
Horticulturae 2025, 11(11), 1302; https://doi.org/10.3390/horticulturae11111302 - 30 Oct 2025
Viewed by 412
Abstract
Fruit quality and skin color are key determinants of apple marketability. This study investigated the effect of fruit maturity and 1-methylcyclopropene (1-MCP) treatment on quality attributes and chlorophyll (Chl) degradation in ‘Golden Ball’ apples during long-term cold storage. Apples were harvested [...] Read more.
Fruit quality and skin color are key determinants of apple marketability. This study investigated the effect of fruit maturity and 1-methylcyclopropene (1-MCP) treatment on quality attributes and chlorophyll (Chl) degradation in ‘Golden Ball’ apples during long-term cold storage. Apples were harvested at two maturity stages—low maturity (LM, starch pattern index [SPI] 6) and high maturity (HM, SPI 8)—based on Cornell’s SPI method, and subsequently treated with 1-MCP (LM+1-MCP and HM+1-MCP) before storage. At harvest, HM fruits exhibited significantly higher soluble solid content (SSC), titratable acidity (TA), red coloration (a*), index of absorbance difference (IAD), and respiration rate compared to LM fruits, although ethylene production, internal ethylene concentration (IEC), and firmness were not affected by maturity stage. During storage, HM fruits showed a more rapid decline in firmness, SSC, and TA, along with increased IEC, respiration rate, and a* value, and reduced IAD and Chl contents. Consistently, expression levels of genes associated with ethylene biosynthesis and Chl degradation were also higher in HM fruits. However, application of 1-MCP effectively suppressed ethylene production and respiration, thereby slowing the deterioration of fruit quality and Chl degradation in both maturity groups. Notably, the LM+1-MCP group demonstrated stronger ethylene inhibition and retained higher Chl levels than the HM+1-MCP group. Overall, the findings demonstrate that applying 1-MCP at the LM stage is a superior strategy for maintaining the postharvest quality of the apples. Full article
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41 pages, 2569 KB  
Systematic Review
Harnessing Metabolomics to Advance Nutrition-Based Therapeutics for Inflammation: A Systematic Review of Randomized Clinical Trials
by Belén Carlino, Gerardo N. Guerrero-Flores, Camila Niclis, Gina Segovia-Siapco and Martín L. Mayta
Metabolites 2025, 15(11), 705; https://doi.org/10.3390/metabo15110705 - 29 Oct 2025
Viewed by 461
Abstract
Background/Objectives: The association between plasma metabolites derived from dietary substrates and inflammatory processes remains underexplored, despite its potential relevance in the prevention of non-communicable diseases. This systematic review aimed to examine the relationship between blood metabolites and the modulation of inflammatory biomarkers. Methods: [...] Read more.
Background/Objectives: The association between plasma metabolites derived from dietary substrates and inflammatory processes remains underexplored, despite its potential relevance in the prevention of non-communicable diseases. This systematic review aimed to examine the relationship between blood metabolites and the modulation of inflammatory biomarkers. Methods: A total of 25 randomized controlled trials, published between 2019 and 2024, were included from an initial pool of 111 records. These studies investigated the effects of dietary patterns, specific food groups, or nutritional supplements on the human metabolome and their potential links to inflammation. Results: Metabolomic analyses were predominantly performed using mass spectrometry (MS)-based platforms (17 out of 25), with liquid chromatography–mass spectrometry as the most frequently employed method. Both targeted (n = 14) and untargeted (n = 11) approaches were represented, and samples were drawn from plasma, urine, and feces. Across the interventions, 64 metabolites were modulated, including fatty acyls, glycerolipids, benzenoids, and organic acids, reflecting potential changes in pathways related to oxidative stress, lipid and carbohydrate metabolism, and inflammatory signaling. Several studies also assessed classical inflammatory biomarkers such as C-reactive protein (CRP), tumor necrosis factor alpha (TNFα), interleukin-6 (IL-6), and monocyte chemoattractant protein-1 (MCP-1). Interventions involving healthy traditional dietary patterns, improvements in dietary fat quality, or the use of specific probiotic strains were often associated with favorable immunometabolic outcomes. In contrast, some interventions, such as Mohana Choorna, elicited upregulation of immune-related gene expression in adipose tissue without improvements in glucose or lipid metabolism. Conclusions: While metabolomic responses varied across studies, the evidence highlights the value of dietary interventions in modulating systemic metabolism and inflammation. These findings support the integration of metabolomics into clinical nutrition to define more personalized and effective dietary strategies for inflammation-related chronic disease prevention. Full article
(This article belongs to the Special Issue The Role of Diet and Nutrition in Relation to Metabolic Health)
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18 pages, 2650 KB  
Article
Lychee Fermented by Mixed Probiotic Strains Alleviates D-Galactose-Induced Skeletal Muscle and Intestinal Aging in Mice
by Huixian Han, Jin Tao, Xiaoyue Bai, Yizhi Jing, Zhengyuan Zhai, Junjie Luo, Wanxiang Zhang, Dan Gan and Yanling Hao
Foods 2025, 14(21), 3684; https://doi.org/10.3390/foods14213684 - 29 Oct 2025
Viewed by 314
Abstract
Aging-associated skeletal muscle and intestinal dysfunction is largely driven by chronic inflammation, oxidative stress, and microbiota imbalance. This study investigated the protective effects of a lychee fermentate (LF) in a D-galactose-induced aging mouse model. LF was prepared using a mixed microbial fermentation approach [...] Read more.
Aging-associated skeletal muscle and intestinal dysfunction is largely driven by chronic inflammation, oxidative stress, and microbiota imbalance. This study investigated the protective effects of a lychee fermentate (LF) in a D-galactose-induced aging mouse model. LF was prepared using a mixed microbial fermentation approach with Lactiplantibacillus plantarum, Lacticaseibacillus casei, Saccharomyces cerevisiae, and Acetobacter pasteurianus SP021. LF administration significantly improved muscle strength and endurance and restored muscle fiber morphology. Meanwhile, LF alleviated colonic transit impairment and downregulated senescence markers p16 and p21. H&E and AB-PAS staining showed that intervention with LF ameliorated the colonic tissue damage, preserved goblet cell populations and promoted MUC2-mediated mucus secretion, which was further confirmed by the upregulation of intestinal barrier-related proteins MUC2, ZO-1, Claudin-1, and Occludin through immunofluorescence analysis. In addition, LF reduced colonic inflammation by suppressing IL-1β, IL-6, TNF-α, CXCL1, and MCP1 expression, and mitigated oxidative stress by lowering malondialdehyde levels to 24.65 ± 3.84 nmol/mL while enhancing glutathione peroxidase and superoxide dismutase activities. Moreover, the LF restored intestinal health by modulating microbiota homeostasis, such as adjusting the Firmicutes/Bacteroidetes ratio and increasing the abundance of beneficial bacteria like Clostridia_UCG-014 and Alistipes. Metabolomic profiling indicated that the enhanced bioactivity of the LF was primarily attributed to the enrichment of phenolic acids, flavonoids and their derivatives postfermentation, including ethyl caffeate, gallic acid, kaempferol and isorhamnetin. In summary, these findings provided new insights into the potential application of LF as a functional food for mitigating skeletal muscle and intestinal aging. Full article
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16 pages, 2037 KB  
Article
Enhancing the Shelf Life of Firm-Fleshed Honey Peaches Using 1-MCP and Laser Microporous Film Packaging
by Naeem Arshad, Muhammad Faisal, Aroona Maryam, Sijia Peng, Lijuan Yu, Haibo Luo and Huibo Song
Horticulturae 2025, 11(11), 1296; https://doi.org/10.3390/horticulturae11111296 - 29 Oct 2025
Viewed by 482
Abstract
Peach trees (Prunus persica L. Batsch) produce climacteric fruits that are prone to senescence and softening after harvesting, and they are susceptible to external pathogens that cause rot and deterioration. This study investigated the effects of 1-methylcyclopropene (1-MCP) treatment combined with laser [...] Read more.
Peach trees (Prunus persica L. Batsch) produce climacteric fruits that are prone to senescence and softening after harvesting, and they are susceptible to external pathogens that cause rot and deterioration. This study investigated the effects of 1-methylcyclopropene (1-MCP) treatment combined with laser microporous film (LMF) packaging on the preservation of firm-fleshed honey peaches (‘Xiahui No. 8’ variety) during refrigerated storage at 5 ± 1 °C. The combined 1-MCP + LMF treatment significantly reduced respiration and rot rates and preserved the levels of reducing sugar and titratable acid after 35 days more effectively compared to the control and LMF groups. The 1-MCP + LMF packaging suppressed cell-wall-degrading enzymes (polygalacturonase, β-glucosidase, and cellulase) and maintained high contents of original pectin, cellulose, and hemicellulose. The treatment also reduced the accumulation of superoxide anions and malondialdehyde, maintained cell-wall structural integrity and fruit hardness, and delayed fruit browning by inhibiting polyphenol oxidase and peroxidase activity. Together, our results demonstrate that the combination of 1-MCP treatment and LMF packaging effectively preserved the hardness and quality of firm-fleshed honey peaches during refrigerated storage, extending their shelf life to 28 days while maintaining good sensory and nutritional qualities. Full article
(This article belongs to the Section Postharvest Biology, Quality, Safety, and Technology)
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26 pages, 2317 KB  
Article
Dendritic Polyglycerol Sulfate Reduces Inflammation Through Inhibition of the HMGB1/RAGE Axis in RAW 264.7 Macrophages
by Marten Kagelmacher, Cristina S. Quella, Emma Kautz, Anna Klumpp, Felix Weichert, Issan Zhang, Dusica Maysinger, Poornima G. Wedamulla, Suzana K. Straus, Thomas Risse, Rainer Haag, Marina Pigaleva and Jens Dernedde
Int. J. Mol. Sci. 2025, 26(21), 10440; https://doi.org/10.3390/ijms262110440 - 27 Oct 2025
Viewed by 378
Abstract
High Mobility Group Box 1 (HMGB1) is a central pro-inflammatory mediator released from damaged or stressed cells, where it activates receptors such as the Receptor for Advanced Glycation Endproducts (RAGE). Dendritic polyglycerol sulfate (dPGS), a hyperbranched polyanionic polymer, is known for its anti-inflammatory [...] Read more.
High Mobility Group Box 1 (HMGB1) is a central pro-inflammatory mediator released from damaged or stressed cells, where it activates receptors such as the Receptor for Advanced Glycation Endproducts (RAGE). Dendritic polyglycerol sulfate (dPGS), a hyperbranched polyanionic polymer, is known for its anti-inflammatory activity. In this study, we examined how dPGS modulates HMGB1-driven signaling in RAW 264.7 macrophages and human microglia. Recombinant human HMGB1 expressed in Escherichia coli (E. coli) was purified by nickel-nitrilotriacetic acid (Ni-NTA) and heparin chromatography. Proximity ligation assays (PLA) revealed that dPGS significantly disrupted HMGB1/RAGE interactions, particularly under lipopolysaccharide (LPS) stimulation, thereby reducing inflammatory signaling complex formation. This correlated with reduced activation of the nuclear factor kappa B (NF-κB) pathway, demonstrated by decreased nuclear translocation and transcriptional activity. Reverse transcription polymerase chain reaction (RT-PCR) and quantitative real-time PCR (RT-qPCR) showed that dPGS suppressed HMGB1- and LPS-induced transcription of tumor necrosis factor alpha (TNF-α), interleukin-6 (IL-6), monocyte chemoattractant protein-1 (MCP-1), cyclooxygenase-2 (COX-2), and inducible nitric oxide synthase (iNOS). Enzyme-linked immunosorbent assay (ELISA) and Griess assays confirmed reduced TNF-α secretion and nitric oxide production. Electron paramagnetic resonance (EPR) spectroscopy further showed that dPGS altered HMGB1/soluble RAGE (sRAGE) complex dynamics, providing mechanistic insight into its receptor-disruptive action. Full article
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11 pages, 2991 KB  
Article
Optimised Neutralisation Strategies for Validating the Virucidal Efficacy of Micro-Chem Plus™ Against High-Containment Negative-Sense RNA Viruses
by Xiaoxiao Gao, Cheng Peng, Chao Shan, Yanfeng Yao and Zhiming Yuan
Viruses 2025, 17(11), 1424; https://doi.org/10.3390/v17111424 - 27 Oct 2025
Viewed by 317
Abstract
Effective disinfectant validation is essential for ensuring biosafety in high-containment laboratories when lethal pathogens are being handled. Micro-Chem Plus™ (MCP) is widely used in high-containment facilities for pathogen disinfection and routine decontamination. However, it induces severe cytotoxicity in cell culture, which may lead [...] Read more.
Effective disinfectant validation is essential for ensuring biosafety in high-containment laboratories when lethal pathogens are being handled. Micro-Chem Plus™ (MCP) is widely used in high-containment facilities for pathogen disinfection and routine decontamination. However, it induces severe cytotoxicity in cell culture, which may lead to an overestimation of its virucidal efficacy during disinfectant validation assays. To resolve this problem, we systematically evaluated the effects of three neutralisation methods (dilution, chemical neutralisation, and chromatographic separation) on MCP. The results showed that a 400-fold dilution with assay medium completely neutralised MCP, but reliable detection required high viral titers (≥6 log10 TCID50/mL). Chemical neutralisation using Dey–Engley broth showed inherent cytotoxicity, while chromatographic separation (MicroSpin S-400 HR/DetergentOUT™ columns) was the most effective but necessitated an additional 8-fold dilution. Validation in a BSL-4 facility with the risk group 4 (RG-4) agent Ebola virus confirmed MCP’s concentration- and time-dependent virucidal activity, achieving a ≥6 log10 TCID50 reduction within 1–5 min. This study establishes an optimised framework for disinfectant validation in high-containment laboratories, addressing critical gaps in current protocols. Full article
(This article belongs to the Section Human Virology and Viral Diseases)
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22 pages, 1550 KB  
Article
Leveraging RAG with ACP & MCP for Adaptive Intelligent Tutoring
by Horia Alexandru Modran
Appl. Sci. 2025, 15(21), 11443; https://doi.org/10.3390/app152111443 - 26 Oct 2025
Viewed by 695
Abstract
This paper presents a protocol-driven hybrid architecture that integrates Retrieval-Augmented Generation (RAG) with two complementary protocols—A Model Context Protocol (MCP) and an Agent Communication Protocol (ACP)—to deliver adaptive, transparent, and interoperable intelligent tutoring for higher-education STEM courses. MCP stores, fuses, and exposes session-, [...] Read more.
This paper presents a protocol-driven hybrid architecture that integrates Retrieval-Augmented Generation (RAG) with two complementary protocols—A Model Context Protocol (MCP) and an Agent Communication Protocol (ACP)—to deliver adaptive, transparent, and interoperable intelligent tutoring for higher-education STEM courses. MCP stores, fuses, and exposes session-, task- and course-level context (learning goals, prior errors, instructor flags, and policy constraints), while ACP standardizes multipart messaging and orchestration among specialized tutor agents (retrievers, context managers, pedagogical policy agents, execution tools, and generators). A Python prototype indexes curated course materials (two course corpora: a text-focused PDF and a multimodal PDF/transcript corpus) into a vector store and applies MCP-mediated re-ranking (linear fusion of semantic similarity, MCP relevance, instructor tags, and recency) before RAG prompt assembly. In a held-out evaluation (240 annotated QA pairs) and human studies (36 students, 12 instructors), MCP-aware re-ranking improved Recall@1, increased citation fidelity, reduced unsupported numerical claims, and raised human ratings for factuality and pedagogical appropriateness. Case studies demonstrate improved context continuity, scaffolded hinting under instructor policies, and useful multimodal grounding. The paper concludes that the ACP–MCP–RAG combination enables more trustworthy, auditable, and pedagogically aligned tutoring agents and outlines directions for multimodal extensions, learned re-rankers, and large-scale institutional deployment. Full article
(This article belongs to the Special Issue Applied Machine Learning for Information Retrieval)
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17 pages, 3778 KB  
Article
Chemical Masculinization of Female Cannabis sativa L.: Impacts on Pollen Viability and Feminized Seed Production
by Ted M. Fitzgerald, John Wyatt Brown, Scott Steinmaus, Jim Prince, Rita Bhandari and Jose F. Da Cunha Leme Filho
Horticulturae 2025, 11(11), 1286; https://doi.org/10.3390/horticulturae11111286 - 25 Oct 2025
Viewed by 917
Abstract
Cannabis is usually dioecious, with male and female flowers on separate plants. Cultivators prioritize the use of female plants because their flowers contain a higher density of glandular trichomes, the primary source of cannabinoids, compared to male flowers. Feminized seeds, which give rise [...] Read more.
Cannabis is usually dioecious, with male and female flowers on separate plants. Cultivators prioritize the use of female plants because their flowers contain a higher density of glandular trichomes, the primary source of cannabinoids, compared to male flowers. Feminized seeds, which give rise exclusively to female plants, are highly valued in the cannabis industry. These seeds are produced by crossing a natural female plant with another female plant that has been masculinized to generate pollen. Masculinization is achieved by inhibiting ethylene and/or applying gibberellins prior to flower initiation in female plants. Currently, silver thiosulfate (STS) is the most common treatment used in the cannabis industry, though environmental concerns arise from silver applications. This study compared STS with three other ethylene-inhibiting agents: aminoethoxyvinylglycine (AVG), cobalt nitrate (CBN), and 1-methylcyclopropene (1-MCP). Some STS and CBN treatments also included gibberellic acid as a synergist. STS-treated plants displayed the most effective masculinization and pollen dispersal, compared to plants treated with AVG. Only STS and AVG generated sufficient pollen for collection. This pollen was initially tested for germination potential and subsequently stored for up to five weeks at 22.2 °C, 7.2 °C, or 1.1 °C.Germination rates ranged from 2.2% to 5.8%, underscoring the influence of storage conditions and highlighting the need to refine preservation methods to enhance agricultural viability. Pollen from plants treated with AVG remained viable for three weeks at 1.1 °C, although there were concerns about a high risk of phytotoxicity. STS-treated pollen also remained viable for three weeks at the same temperature. Neither CBN nor 1-MCP treatments were effective in inducing masculinization. No clear synergistic effect of gibberellic acid combined with STS or AVG was observed; however, growth stunting led to increased mortality. Due to pollen viability and phytotoxicity problems with AVG, STS remains the best treatment to masculinize female cannabis plants when breeding for feminized seeds. Full article
(This article belongs to the Section Medicinals, Herbs, and Specialty Crops)
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Article
Effects of Soybean Meal Replacement on Growth Performance, Rumen Fermentation, Rumen Microorganisms, and Metabolites in Dumont Lambs
by Henan Lu, Hairong Wang, Boyang Li, Zenghao Lv, Shufang Li, Yuhao Xia and Lina Wang
Animals 2025, 15(21), 3096; https://doi.org/10.3390/ani15213096 - 24 Oct 2025
Viewed by 277
Abstract
This study investigated the effects of replacing part of the soybean meal in the diet of Dumont lambs with urea, rapeseed meal, and cottonseed meal on their growth performance and rumen fermentation and combined rumen microbial metagenomics and metabolomics to explain the reasons [...] Read more.
This study investigated the effects of replacing part of the soybean meal in the diet of Dumont lambs with urea, rapeseed meal, and cottonseed meal on their growth performance and rumen fermentation and combined rumen microbial metagenomics and metabolomics to explain the reasons for the changes in phenotypic data. Twenty-four healthy male Dumont lambs were divided into four groups: soybean meal group (T1, control group), group with 1.5% urea replacing 6.4% soybean meal (T2), group with 1% urea replacing 4.3% soybean meal (T3), and group with 1% urea + 6.6% cottonseed meal +5% rapeseed meal replacing all soybean meal (19%) (T4), following the principle of equal energy and nitrogen. Urea, rapeseed meal, and cottonseed meal have different degradation rates in the rumen, primarily stimulating arginine biosynthesis, sulphur metabolism, and carbon fixation in photosynthetic organisms through Prevotella genus mediation, thereby influencing the accumulation of metabolites such as 9,10-DiHOME, DG (PGJ2/a-15:0/0:0), isonicotinate and taxifolin, affecting rumen fermentation. Compared with the T1 group, the T2 group showed significantly increased ammonia nitrogen (NH3-N) and microbial protein (MCP) content (p < 0.01) and improved fructose and mannose metabolic capacity (p < 0.05). The T3 group showed a significant increase in total volatile fatty acids (TVFA) and MCP content (p < 0.01), which facilitated the absorption of subsequent nutrients. In the T4 group, different degradation rates of nitrogen resources and rapeseed meal + cottonseed meal contained abundant and complementary amino acids, which improved rumen fermentation, enhanced rumen microbial and metabolite diversity, and optimized the synergistic metabolic efficiency of carbon, nitrogen and sulphur. However, the specific mechanisms of post-rumen metabolism and absorption require further investigation. Full article
(This article belongs to the Section Small Ruminants)
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