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11 pages, 1421 KiB  
Article
Fertilization Promotes the Recovery of Plant Productivity but Decreases Biodiversity in a Khorchin Degraded Grassland
by Lina Zheng, Wei Zhao, Shaobo Gao, Ruizhen Wang, Haoran Yan and Mingjiu Wang
Nitrogen 2025, 6(3), 64; https://doi.org/10.3390/nitrogen6030064 (registering DOI) - 4 Aug 2025
Abstract
Fertilization is a critical measure for vegetation restoration and ecological reconstruction in degraded grasslands. However, little is known about the long-term effects of different combinations of nitrogen (N), phosphorus (P), potassium (K) on plant and microbial communities in degraded grasslands. This study conducted [...] Read more.
Fertilization is a critical measure for vegetation restoration and ecological reconstruction in degraded grasslands. However, little is known about the long-term effects of different combinations of nitrogen (N), phosphorus (P), potassium (K) on plant and microbial communities in degraded grasslands. This study conducted a four-year (2017–2020) N, P, K addition experiment in the Khorchin Grassland, a degraded typical grassland located in Zhalute Banner, Tongliao City, Inner Mongolia, to investigate the effects of fertilization treatment on plant functional groups and microbial communities after grazing exclusion. Our results showed that the addition of P, NP, and NPK compound fertilizers significantly increased aboveground biomass of the plant community, which is mainly related to the improvement of nutrient availability to promote the growth of specific plant functional groups, especially annual and biennial plants and perennial bunchgrasses. However, the addition of N, P, and NP fertilizers significantly reduced the species diversity of the plant community. At the same time, the addition of N, P, and NP fertilizers and the application of N and NP significantly reduced fungal species diversity but had no significant effect on soil bacteria. Our study provides new insights into the relationships between different types of fertilization and plant community productivity and biodiversity in degraded grasslands over four years of fertilization, which is critical for evaluating the effect of fertilization on the restoration of degraded grassland. Full article
30 pages, 9116 KiB  
Article
Habitat Loss and Other Threats to the Survival of Parnassius apollo (Linnaeus, 1758) in Serbia
by Dejan V. Stojanović, Vladimir Višacki, Dragana Ranđelović, Jelena Ivetić and Saša Orlović
Insects 2025, 16(8), 805; https://doi.org/10.3390/insects16080805 (registering DOI) - 4 Aug 2025
Abstract
The cessation of traditional mountain grazing has emerged as a principal driver of habitat degradation and the local extinction of Parnassius apollo (Linnaeus, 1758) in Serbia. While previous studies have cited multiple contributing factors, our research provides evidence that the abandonment of extensive [...] Read more.
The cessation of traditional mountain grazing has emerged as a principal driver of habitat degradation and the local extinction of Parnassius apollo (Linnaeus, 1758) in Serbia. While previous studies have cited multiple contributing factors, our research provides evidence that the abandonment of extensive livestock grazing has triggered vegetation succession, the disappearance of the larval host plant (Sedum album), and a reduction in microhabitat heterogeneity—conditions essential for the persistence of this stenophagous butterfly species. Through satellite-based analysis of vegetation dynamics (2015–2024), we identified clear structural differences between habitats that currently support populations and those where the species is no longer present. Occupied sites were characterized by low levels of exposed soil, moderate grass coverage, and consistently high shrub and tree density, whereas unoccupied sites exhibited dense encroachment of grasses and woody vegetation, leading to structural instability. Furthermore, MODIS-derived indices (2010–2024) revealed a consistent decline in vegetation productivity (GPP, FPAR, LAI) in succession-affected areas, alongside significant correlations between elevated land surface temperatures (LST), thermal stress (TCI), and reduced photosynthetic capacity. A wildfire event on Mount Stol in 2024 further exacerbated habitat degradation, as confirmed by remote sensing indices (BAI, NBR, NBR2), which documented extensive burn scars and post-fire vegetation loss. Collectively, these findings indicate that the decline of P. apollo is driven not only by ecological succession and climatic stressors, but also by the abandonment of land-use practices that historically maintained suitable habitat conditions. Our results underscore the necessity of restoring traditional grazing regimes and integrating ecological, climatic, and landscape management approaches to prevent further biodiversity loss in montane environments. Full article
(This article belongs to the Section Insect Ecology, Diversity and Conservation)
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14 pages, 3622 KiB  
Article
Environmental DNA Metabarcoding as a Tool for Fast Fish Assessment in Post-Cleanup Activities: Example from Two Urban Lakes in Zagreb, Croatia
by Matej Vucić, Thomas Baudry, Dušan Jelić, Ana Galov, Željko Pavlinec, Lana Jelić, Biljana Janev Hutinec, Göran Klobučar, Goran Slivšek and Frédéric Grandjean
Fishes 2025, 10(8), 375; https://doi.org/10.3390/fishes10080375 (registering DOI) - 4 Aug 2025
Abstract
This study evaluated the effectiveness of eDNA metabarcoding in assessing fish communities in two urban lakes (First Lake and Second Lake) in Zagreb, Croatia, following IAS removal. Water samples were collected in April and June 2024 and analyzed using MiFish primers targeting the [...] Read more.
This study evaluated the effectiveness of eDNA metabarcoding in assessing fish communities in two urban lakes (First Lake and Second Lake) in Zagreb, Croatia, following IAS removal. Water samples were collected in April and June 2024 and analyzed using MiFish primers targeting the 12S rRNA gene. The results indicated that the cleanup efforts were largely successful, as several IAS previously recorded in these lakes were not detected (Ameiurus melas, Lepomis gibbosus, and Hypophthalmichthys spp.). However, some others persisted in low relative abundances, such as grass carp (Ctenopharyngodon idella), topmouth gudgeon (Pseudorasbora parva), and prussian/crucian carp (Carassius sp.). Species composition differed between lakes, with common carp (Cyprinus carpio) dominating Maksimir First Lake, while chub (Squalius cephalus) was prevalent in Maksimir Second Lake. Unexpected eDNA signals from salmonid and exotic species suggest potential input from upstream sources, human activity, or the nearby Zoo Garden. These findings underscore the utility of eDNA metabarcoding in biodiversity monitoring and highlight the need for continuous surveillance and adaptive management strategies to ensure long-term IAS control. Full article
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13 pages, 1780 KiB  
Article
The Use of Sound Recorders to Remotely Measure Grass Intake Behaviour in Horses
by Daisy E. F. Taylor, Bryony E. Lancaster and Andrea D. Ellis
Animals 2025, 15(15), 2273; https://doi.org/10.3390/ani15152273 - 4 Aug 2025
Abstract
Visual observation to record grass intake is time-consuming and labour-intensive. Technological methods, such as activity monitors, have been used but only record head position. This study aimed to evaluate sound recorders attached to headcollars to acoustically measure grass intake behaviour in horses as [...] Read more.
Visual observation to record grass intake is time-consuming and labour-intensive. Technological methods, such as activity monitors, have been used but only record head position. This study aimed to evaluate sound recorders attached to headcollars to acoustically measure grass intake behaviour in horses as a low-cost alternative method. Pilot Study 1 assessed 6 × 11 min periods comparing bites/min and chews/min between video footage (VD) and sound recorders (SR). Grazing was identified audibly (SRear) and visually through soundwave pattern software (SRwav). Chew rates (SRear: 47 ± 5 chews/min, VD: 43 ± 4 chews/min) were similar between methods. Pilot Study 2 compared hourly grass intake times between SRwav and visual observation (VO) for two horses during a 3 h period. Results showed significant correlation between methods (rho = 0.99, p < 0.01, Spearman). The main study measured intake behaviour using SRwav and VO methods for three free-ranging horses during 3 h observation periods over multiple days, adding up to 3 × 24 h in winter and in spring (n = 48). Mean differences per period between SRwav and VO were 1.8% ± 3 s.d. Foraging duration per period measured with SRwav closely matched VO (r2 = 0.99, p < 0.001). Sound recorders accurately recorded grass intake time and chews in grazing horses during moderate weather conditions. Full article
(This article belongs to the Section Equids)
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18 pages, 6860 KiB  
Article
Molecular Characterization and Antiviral Function Against GCRV of Complement Factor D in Barbel Chub (Squaliobarbus curriculus)
by Yu Xiao, Zhao Lv, Yuling Wei, Mengyuan Zhang, Hong Yang, Chao Huang, Tiaoyi Xiao and Yilin Li
Fishes 2025, 10(8), 370; https://doi.org/10.3390/fishes10080370 (registering DOI) - 2 Aug 2025
Viewed by 116
Abstract
The barbel chub (Squaliobarbus curriculus) exhibits remarkable resistance to grass carp reovirus (GCRV), a devastating pathogen in aquaculture. To reveal the molecular basis of this resistance, we investigated complement factor D (DF)—a rate-limiting serine protease governing alternative complement pathway activation. Molecular [...] Read more.
The barbel chub (Squaliobarbus curriculus) exhibits remarkable resistance to grass carp reovirus (GCRV), a devastating pathogen in aquaculture. To reveal the molecular basis of this resistance, we investigated complement factor D (DF)—a rate-limiting serine protease governing alternative complement pathway activation. Molecular cloning revealed that the barbel chub DF (ScDF) gene encodes a 1251-bp cDNA sequence translating into a 250-amino acid protein. Crucially, bioinformatic characterization identified a unique N-glycosylation site at Asn139 in ScDF, representing a structural divergence absent in grass carp (Ctenopharyngodon idella) DF (CiDF). While retaining a conserved Tryp_SPc domain harboring the catalytic triad (His61, Asp109, and Ser204) and substrate-binding residues (Asp198, Ser219, and Gly221), sequence and phylogenetic analyses confirmed ScDF’s evolutionary conservation, displaying 94.4% amino acid identity with CiDF and clustering within the Cyprinidae. Expression profiling revealed constitutive ScDF dominance in the liver, and secondary prominence was observed in the heart. Upon GCRV challenge in S. curriculus kidney (SCK) cells, ScDF transcription surged to a 438-fold increase versus uninfected controls at 6 h post-infection (hpi; p < 0.001)—significantly preceding the 168-hpi response peak documented for CiDF in grass carp. Functional validation showed that ScDF overexpression suppressed key viral capsid genes (VP2, VP5, and VP7) and upregulated the interferon regulator IRF9. Moreover, recombinant ScDF protein incubation induced interferon pathway genes and complement C3 expression. Collectively, ScDF’s rapid early induction (peaking at 6 hpi) and multi-pathway coordination may contribute to barbel chub’s GCRV resistance. These findings may provide molecular insights into the barbel chub’s high GCRV resistance compared to grass carp and novel perspectives for anti-GCRV breeding strategies in fish. Full article
(This article belongs to the Special Issue Molecular Design Breeding in Aquaculture)
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19 pages, 977 KiB  
Article
Physical-Hydric Properties of a Planosols Under Long-Term Integrated Crop–Livestock–Forest System in the Brazilian Semiarid
by Valter Silva Ferreira, Flávio Pereira de Oliveira, Pedro Luan Ferreira da Silva, Adriana Ferreira Martins, Walter Esfrain Pereira, Djail Santos, Tancredo Augusto Feitosa de Souza, Robson Vinício dos Santos and Milton César Costa Campos
Forests 2025, 16(8), 1261; https://doi.org/10.3390/f16081261 - 2 Aug 2025
Viewed by 120
Abstract
The objective of this study was to evaluate the physical-hydric properties of a Planosol under an Integrated Crop–Livestock–Forest (ICLF) system in the Agreste region of Paraíba, Brazil, after eight years of implementation, and to compare them with areas under a conventional cropping system [...] Read more.
The objective of this study was to evaluate the physical-hydric properties of a Planosol under an Integrated Crop–Livestock–Forest (ICLF) system in the Agreste region of Paraíba, Brazil, after eight years of implementation, and to compare them with areas under a conventional cropping system and secondary native vegetation. The experiment was conducted at the experimental station located in Alagoinha, in the Agreste mesoregion of the State of Paraíba, Brazil. The experimental design adopted was a randomized block design (RBD) with five treatments and four replications (5 × 4 + 2). The treatments consisted of: (1) Gliricidia (Gliricidia sepium (Jacq.) Steud) + Signal grass (Urochloa decumbens) (GL+SG); (2) Sabiá (Mimosa caesalpiniaefolia Benth) + Signal grass (SB+SG); (3) Purple Ipê (Handroanthus avellanedae (Lorentz ex Griseb.) Mattos) + SG (I+SG); (4) annual crop + SG (C+SG); and (5) Signal grass (SG). Two additional treatments were included for statistical comparison: a conventional cropping system (CC) and a secondary native vegetation area (NV), both located near the experimental site. The CC treatment showed the lowest bulk density (1.23 g cm−3) and the lowest degree of compaction (66.3%) among the evaluated treatments, as well as a total porosity (TP) higher than 75% (0.75 m3 m−3). In the soil under the integration system, the lowest bulk density (1.38 g cm−3) and the highest total porosity (0.48 m3 m−3) were observed in the SG treatment at the 0.0–0.10 m depth. High S-index values (>0.035) and a low relative field capacity (RFc < 0.50) and Kθ indicate high structural quality and low soil water storage capacity. It was concluded that the SG, I+SG, SB+SG, and CC treatments presented the highest values of soil bulk and degree of compaction in the layers below 0.10 m. The I+SG and C+SG treatments showed the lowest hydraulic conductivities and macroaggregation. The SG and C+SG treatments had the lowest available water content and available water capacity across the three analyzed soil layers. Full article
(This article belongs to the Special Issue Forest Soil Physical, Chemical, and Biological Properties)
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23 pages, 5040 KiB  
Article
Population Density and Diversity of Millipedes in Four Habitat Classes: Comparison Concerning Vegetation Type and Soil Characteristics
by Carlos Suriel, Julián Bueno-Villegas and Ulises J. Jauregui-Haza
Ecologies 2025, 6(3), 55; https://doi.org/10.3390/ecologies6030055 (registering DOI) - 1 Aug 2025
Viewed by 165
Abstract
Our study was conducted in the Valle Nuevo National Park and included four habitat classes: tussock grass (Sabapa), pine forest (Pinoc), broadleaf forest (Boslat), and agricultural ecosystem (Ecoag). We had two main objectives: to comparatively describe millipede communities and to determine the relationships [...] Read more.
Our study was conducted in the Valle Nuevo National Park and included four habitat classes: tussock grass (Sabapa), pine forest (Pinoc), broadleaf forest (Boslat), and agricultural ecosystem (Ecoag). We had two main objectives: to comparatively describe millipede communities and to determine the relationships between population density/diversity and soil physicochemical variables. The research was cross-sectional and non-manipulative, with a descriptive and correlational scope; sampling followed a stratified systematic design, with eight transects and 32 quadrats of 1 m2, covering 21.7 km. We found a sandy loam soil with an extremely acidic pH. The highest population density of millipedes was recorded in Sabapa, and the lowest in Ecoag. The highest alpha diversity was shared between Boslat (Margalef = 1.72) and Pinoc (Shannon = 2.53); Sabapa and Boslat showed the highest Jaccard similarity (0.56). The null hypothesis test using the weighted Shannon index revealed a statistically significant difference in diversity between the Boslat–Sabapa and Pinoc–Sabapa pairs. Two of the species recorded highly significant indicator values (IndVal) for two habitat classes. We found significant correlations (p < 0.05) between various soil physicochemical variables and millipede density and diversity. Full article
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21 pages, 3686 KiB  
Article
Genome-Wide Analyses of the XTH Gene Family in Brachypodium distachyon and Functional Analyses of the Role of BdXTH27 in Root Elongation
by Hongyan Shen, Qiuping Tan, Wenzhe Zhao, Mengdan Zhang, Cunhao Qin, Zhaobing Liu, Xinsheng Wang, Sendi An, Hailong An and Hongyu Wu
Int. J. Mol. Sci. 2025, 26(15), 7457; https://doi.org/10.3390/ijms26157457 (registering DOI) - 1 Aug 2025
Viewed by 82
Abstract
Xyloglucan endotransglucosylase/hydrolases (XTHs) are a class of cell wall-associated enzymes involved in the construction and remodeling of cellulose/xyloglucan crosslinks. However, knowledge of this gene family in the model monocot Brachypodium distachyon is limited. A total of 29 BdXTH genes were identified from the [...] Read more.
Xyloglucan endotransglucosylase/hydrolases (XTHs) are a class of cell wall-associated enzymes involved in the construction and remodeling of cellulose/xyloglucan crosslinks. However, knowledge of this gene family in the model monocot Brachypodium distachyon is limited. A total of 29 BdXTH genes were identified from the whole genome, and these were further divided into three subgroups (Group I/II, Group III, and the Ancestral Group) through evolutionary analysis. Gene structure and protein motif analyses indicate that closely clustered BdXTH genes are relatively conserved within each group. A highly conserved amino acid domain (DEIDFEFLG) responsible for catalytic activity was identified in all BdXTH proteins. We detected three pairs of segmentally duplicated BdXTH genes and five groups of tandemly duplicated BdXTH genes, which played vital roles in the expansion of the BdXTH gene family. Cis-elements related to hormones, growth, and abiotic stress responses were identified in the promoters of each BdXTH gene, and when roots were treated with two abiotic stresses (salinity and drought) and four plant hormones (IAA, auxin; GA3, gibberellin; ABA, abscisic acid; and BR, brassinolide), the expression levels of many BdXTH genes changed significantly. Transcriptional analyses of the BdXTH genes in 38 tissue samples from the publicly available RNA-seq data indicated that most BdXTH genes have distinct expression patterns in different tissues and at different growth stages. Overexpressing the BdXTH27 gene in Brachypodium led to reduced root length in transgenic plants, which exhibited higher cellulose levels but lower hemicellulose levels compared to wild-type plants. Our results provide valuable information for further elucidation of the biological functions of BdXTH genes in the model grass B. distachyon. Full article
(This article belongs to the Section Molecular Plant Sciences)
11 pages, 1941 KiB  
Article
Nomenclature and Typification of the Goat Grass Aegilops tauschii Coss. (Poaceae: Triticeae): A Key Species for the Secondary Gene Pool of Common Wheat Triticum aestivum
by P. Pablo Ferrer-Gallego, Raúl Ferrer-Gallego, Diego Rivera, Concepción Obón, Emilio Laguna and Nikolay P. Goncharov
Plants 2025, 14(15), 2375; https://doi.org/10.3390/plants14152375 - 1 Aug 2025
Viewed by 155
Abstract
Background: The typification of the name Aegilops tauschii Coss. (Poaceae: Triticeae) is revisited. Several authors cited a gathering from Iberia as the locality and Buxbaum as the collector of as the type, but no actual specimens from this collection have been located, nor [...] Read more.
Background: The typification of the name Aegilops tauschii Coss. (Poaceae: Triticeae) is revisited. Several authors cited a gathering from Iberia as the locality and Buxbaum as the collector of as the type, but no actual specimens from this collection have been located, nor is there evidence that such a gathering existed. In 1994, van Slageren designated as lectotype an illustration from Buxbaum’s Plantarum minus cognitarum centuria I (1728), which, although original material, is not the only element cited in the protologue. The protologue mentions several gatherings, some of which are represented by identifiable herbarium specimens qualifying as syntypes. Methods: This work is based on the analysis of the protologue of Aegilops tauschii and the study of specimens conserved in several herbaria. According to the International Code of Nomenclature for algae, fungi, and plants (ICN, Shenzhen Code 2018), an illustration does not hold the same nomenclatural weight as preserved specimens cited in the protologue. Therefore, van Slageren’s lectotypification does not comply with Art. 9.12 of the ICN and must be superseded. Results: The original material includes multiple elements, and a new lectotype is designated from a specimen at PRC from Azerbaijan. Full article
(This article belongs to the Special Issue Taxonomy and Nomenclature of Euro + Mediterranean Vascular Plants)
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17 pages, 4929 KiB  
Article
Assessment of Grassland Carrying Capacity and Grass–Livestock Balance in the Three River Headwaters Region Under Different Scenarios
by Wenjing Li, Qiong Luo, Zhe Chen, Yanlin Liu, Zhouyuan Li and Wenying Wang
Biology 2025, 14(8), 978; https://doi.org/10.3390/biology14080978 (registering DOI) - 1 Aug 2025
Viewed by 136
Abstract
It is crucial to clarify the grassland carrying capacity (CC) and the balance between grass and livestock under different scenarios for ecological protection and sustainable development in the Three River Headwaters Region (TRHR). This study focused on the TRHR and used livestock data, [...] Read more.
It is crucial to clarify the grassland carrying capacity (CC) and the balance between grass and livestock under different scenarios for ecological protection and sustainable development in the Three River Headwaters Region (TRHR). This study focused on the TRHR and used livestock data, MODIS Net Primary Productivity (NPP) data, and artificial supplementary feeding data to analyze grassland CC and explore changes in the grass–livestock balance across various scenarios. The results showed that the theoretical CC of edible forage under complete grazing conditions was much lower than that of crude protein under nutritional carrying conditions. Furthermore, without increasing the grazing intensity of natural grasslands, artificial supplementary feeding reduced overstocking areas by 21%. These results suggest that supplementary feeding effectively addresses the imbalance between forage supply and demand, serving as a key measure for achieving sustainable grassland livestock husbandry. Despite the effective mitigation of grassland degradation in the TRHR due to strict grass–livestock balance policies and ecological restoration projects, the actual livestock CC exceeded the theoretical capacity, leading to overgrazing in some areas. To achieve desired objectives, more effective grassland management strategies must be implemented in the future to minimize spatiotemporal conflicts between grasses and livestock and ensure the health and stability of grassland ecosystems. Full article
(This article belongs to the Section Conservation Biology and Biodiversity)
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18 pages, 1618 KiB  
Article
Native Grass Enhances Bird, Dragonfly, Butterfly and Plant Biodiversity Relative to Conventional Crops in Midwest, USA
by Steven I. Apfelbaum, Susan M. Lehnhardt, Michael Boston, Lea Daly, Gavin Pinnow, Kris Gillespie and Donald M. Waller
Agriculture 2025, 15(15), 1666; https://doi.org/10.3390/agriculture15151666 - 1 Aug 2025
Viewed by 149
Abstract
Conspicuous declines in native grassland habitats have triggered sharp reductions in grassland birds, dragonflies, butterflies, and native plant populations and diversity. We compared these biotic groups among three crop type treatments: corn, alfalfa, and a perennial native grass, Virginia wild rye, (Elymus [...] Read more.
Conspicuous declines in native grassland habitats have triggered sharp reductions in grassland birds, dragonflies, butterflies, and native plant populations and diversity. We compared these biotic groups among three crop type treatments: corn, alfalfa, and a perennial native grass, Virginia wild rye, (Elymus virginicus L.) or VWR. This crop type had 2-3X higher bird, dragonfly, butterfly and plant species richness, diversity, and faunal abundance relative to alfalfa and corn types. VWR crop fields also support more obligate grassland bird species and higher populations of dragonfly and butterfly species associated with grasslands and wet meadows. In contrast, the corn and alfalfa types support few or no obligatory grassland birds and mostly non-native insects such as the white cabbage looper (Artogeia rapae L.), the common yellow sulfur butterfly (Colias philodice Godart.), and the mobile and migratory common green darner dragonfly (Anax junius Drury.). In sum, the VWR perennial native grass crop type offers a special opportunity to improve the diversity and abundance of grassland bird species, beneficial insect species, and many native plant species within agricultural landscapes. Full article
(This article belongs to the Section Agricultural Systems and Management)
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11 pages, 2025 KiB  
Article
Remarkable Stability of Uropodina (Acari: Mesostigmata) Communities in Artificial Microhabitats: A Case Study of Bird Nest Boxes in Bory Tucholskie National Park
by Marta Kulczak, Jacek Wendzonka, Karolina Lubińska, Agnieszka Napierała and Jerzy Błoszyk
Diversity 2025, 17(8), 544; https://doi.org/10.3390/d17080544 (registering DOI) - 1 Aug 2025
Viewed by 127
Abstract
The presence of nest boxes not only increases the reproductive success of many passerine birds in transformed forest habitats, but they also constitute important artificial microhabitats for many groups of invertebrates. One of such groups which have been often found in this microhabitat [...] Read more.
The presence of nest boxes not only increases the reproductive success of many passerine birds in transformed forest habitats, but they also constitute important artificial microhabitats for many groups of invertebrates. One of such groups which have been often found in this microhabitat is saprophagous mites from the suborder Uropodina (Acari: Mesostigmata). The current study was conducted in October 2023 and 2024 in Bory Tucholskie National Park (BTNP) (northern Poland), where material from 137 tit (Paridae) and nuthatch (Sitta europaea) nest boxes was collected. The aim of this study was to analyse the stability of the communities of Uropodina in nest boxes in the park in two seasons and to determine whether the mite community structure within these nest boxes is similar in each year. The second aim was to analyse the abundance of Uropodina in relation to the composition of the nest box bedding material. This study revealed that the community in the scrutinised nest boxes was formed in both seasons by two species of nidicolous Uropodina species, i.e., Leiodinychus orbicularis (C.L. Koch, 1839) and Chiropturopoda nidiphila (Wiśniewski and Hirschmann, 1993), and that the species composition and the community structure were also very similar in both years. This study revealed that Ch. nidiphila dominated in the nest boxes with moss and grass, whereas L. orbicularis was most abundant in the boxes where the bedding was a mixture of mammalian hair and grass. However, no statistically significant differences in the abundance of these two mite species in both cases were revealed. Full article
(This article belongs to the Special Issue Diversity, Ecology, and Conservation of Mites)
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29 pages, 10502 KiB  
Article
A Comparative Bioinformatic Investigation of the Rubisco Small Subunit Gene Family in True Grasses Reveals Novel Targets for Enhanced Photosynthetic Efficiency
by Brittany Clare Thornbury, Tianhua He, Yong Jia and Chengdao Li
Int. J. Mol. Sci. 2025, 26(15), 7424; https://doi.org/10.3390/ijms26157424 (registering DOI) - 1 Aug 2025
Viewed by 104
Abstract
Ribulose bisphosphate carboxylase (RuBisCO) is the primary regulator of carbon fixation in the plant kingdom. Although the large subunit (RBCL) is the site of catalysis, RuBisCO efficiency is also influenced by the sequence divergence of the small subunit (RBCS). This project compared the [...] Read more.
Ribulose bisphosphate carboxylase (RuBisCO) is the primary regulator of carbon fixation in the plant kingdom. Although the large subunit (RBCL) is the site of catalysis, RuBisCO efficiency is also influenced by the sequence divergence of the small subunit (RBCS). This project compared the RBCS gene family in C3 and C4 grasses to identify genetic targets for improved crop photosynthesis. Triticeae/Aveneae phylogeny groups exhibited a syntenic tandem duplication array averaging 326.1 Kbp on ancestral chromosomes 2 and 3, with additional copies on other chromosomes. Promoter analysis revealed a paired I-box element promoter arrangement in chromosome 5 RBCS of H. vulgare, S. cereale, and A. tauschii. The I-box pair was associated with significantly enhanced expression, suggesting functional adaptation of specific RBCS gene copies in Triticaeae. H. vulgare-derived pan-transcriptome data showed that RBCS expression was 50.32% and 28.44% higher in winter-type accessions compared to spring types for coleoptile (p < 0.05) and shoot, respectively (p < 0.01). Molecular dynamics simulations of a mutant H. vulgare Rubisco carrying a C4-like amino acid substitution (G59C) in RBCS significantly enhanced the stability of the Rubisco complex. Given the known structural efficiency of C4 Rubisco complexes, G59C could serve as an engineering target for enhanced RBCS in economically crucial crop species which, in comparison, possess less efficient Rubisco complexes. Full article
(This article belongs to the Special Issue Molecular Genetics, Genomics and Breeding in Field Crops)
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13 pages, 1294 KiB  
Article
Soil Phosphorus Availability Modulates Host Selectivity of Pedicularis kansuensis Between Legumes and Grasses
by Xiaolin Sui, Ruijuan Xue and Airong Li
Plants 2025, 14(15), 2356; https://doi.org/10.3390/plants14152356 - 31 Jul 2025
Viewed by 171
Abstract
Host selectivity or preference plays a critical role in enabling parasitic plants to identify suitable hosts and influence plant community dynamics. Phosphorus (P) is known to affect the growth of root hemiparasitic plants and their interaction with single host species, but its role [...] Read more.
Host selectivity or preference plays a critical role in enabling parasitic plants to identify suitable hosts and influence plant community dynamics. Phosphorus (P) is known to affect the growth of root hemiparasitic plants and their interaction with single host species, but its role in shaping host selectivity across multiple hosts is unclear. In a pot experiment, we used a grass–legume co-culture design and evaluated whether the root hemiparasitic plant Pedicularis kansuensis exhibits selective parasitism on legumes (Medicago sativa) versus grasses (Elymus nutans) and assessed the impact of soil P availability on this preference. The results showed that P. kansuensis inhibited the growth of both host species, but the magnitude of suppression varied with P availability. Under low P conditions, P. kansuensis preferentially parasitized the tender M. sativa, causing a greater biomass reduction in the legume. In contrast, at high P levels, P. kansuensis decreased its foraging on legumes, shifting its parasitism towards the dominant E. nutans, which potentially led to stronger suppression of grass growth. Our findings demonstrate that soil P availability modulates host selectivity in P. kansuensis, emphasizing the influence of soil nutrient conditions on parasite–host dynamics. This research provides insights into managing the impacts of parasitic plants on plant community structure through nutrient interventions. Full article
(This article belongs to the Special Issue Phosphorus and pH Management in Soil–Plant Systems)
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Review
Mitochondrial Regulation of Spermatozoa Function: Metabolism, Oxidative Stress and Therapeutic Insights
by Zhiqian Xu, Qi Yan, Ke Zhang, Ying Lei, Chen Zhou, Tuanhui Ren, Ning Gao, Fengyun Wen and Xiaoxia Li
Animals 2025, 15(15), 2246; https://doi.org/10.3390/ani15152246 - 31 Jul 2025
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Abstract
Mitochondria are central to energy production and redox regulation in spermatozoa, supporting key functions such as progressive motility, capacitation, and the acrosome reaction. These processes are essential for successful fertilization and embryo development. However, species-specific differences exist in the reliance on oxidative phosphorylation [...] Read more.
Mitochondria are central to energy production and redox regulation in spermatozoa, supporting key functions such as progressive motility, capacitation, and the acrosome reaction. These processes are essential for successful fertilization and embryo development. However, species-specific differences exist in the reliance on oxidative phosphorylation versus glycolysis. Mitochondria also generate reactive oxygen species, which at physiological levels aid in sperm function but can cause oxidative stress and damage when overproduced. Mitochondrial dysfunction and excessive ROS can impair membrane potential, induce apoptosis, and damage nuclear and mitochondrial DNA, ultimately compromising sperm quality. Sperm mitochondrial DNA is highly susceptible to mutations and deletions, contributing to reduced motility and fertility. Targeted antioxidant strategies have emerged as promising therapeutic interventions to mitigate oxidative damage. This article provides a comprehensive overview of mitochondrial regulation in spermatozoa, the consequences of redox imbalance, and the potential of mitochondria-targeted antioxidants to improve sperm function and male fertility outcomes. The paper aims to deepen our understanding of mitochondrial roles in sperm physiology and contribute to the advancement of strategies for addressing male infertility. Full article
(This article belongs to the Section Animal Reproduction)
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