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36 pages, 21951 KiB  
Article
The Collective Dwelling of Cooperative Promotion in Caselas
by Vanda Pereira de Matos and Carlos Alberto Assunção Alho
Buildings 2025, 15(15), 2756; https://doi.org/10.3390/buildings15152756 - 5 Aug 2025
Abstract
To solve the present housing crisis, the Support for Access to Housing Program, in the context of PRR, mainly focuses on social housing to be built or on housing of social interest to be regenerated. To approach this problem, a research question was [...] Read more.
To solve the present housing crisis, the Support for Access to Housing Program, in the context of PRR, mainly focuses on social housing to be built or on housing of social interest to be regenerated. To approach this problem, a research question was raised: “What is the significance of the existing cooperative housing in solving the current housing crisis?” To analyze this issue, a multiple case study was adopted, comparing a collective dwelling of cooperative promotion at controlled costs in Caselas (1980s–1990s) with Expo Urbe (2000–2007) in Parque das Nações, a symbol of the new sustainable cooperative housing, which targets a population with a higher standard of living and thus is excluded from the PRR plan. These cases revealed the discrepancy created by the Cooperative Code of 1998 and its consequences for the urban regeneration of this heritage. They show that Caselas, built in a residential urban neighborhood, is strongly attached to a community, provides good social inclusion for vulnerable groups at more affordable prices, and it is eligible for urban regeneration and reuse (for renting or buying). However, the reuse of Caselcoop’s edifices cannot compromise their cultural and residential values or threaten the individual integrity. Full article
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13 pages, 857 KiB  
Article
Orange Allergy Beyond LTP: IgE Recognition of Germin-like Proteins in Citrus Fruits
by M. Soledad Zamarro Parra, Montserrat Martínez-Gomaríz, Alan Hernández, Javier Alcover, Isabel Dobski, David Rodríguez, Ricardo Palacios and Antonio Carbonell
Curr. Issues Mol. Biol. 2025, 47(8), 621; https://doi.org/10.3390/cimb47080621 - 5 Aug 2025
Abstract
Orange allergy is estimated to account for up to 3–4% of food allergies. Major allergens identified in orange (Citrus sinensis) include Cit s 1 (germin-like protein) and Cit s 2 (profilin), while Cit s 3 (non-specific lipid transfer protein, nsLTP) and [...] Read more.
Orange allergy is estimated to account for up to 3–4% of food allergies. Major allergens identified in orange (Citrus sinensis) include Cit s 1 (germin-like protein) and Cit s 2 (profilin), while Cit s 3 (non-specific lipid transfer protein, nsLTP) and Cit s 7 (gibberellin-regulated protein) have also been described. The objective of this study was to investigate the presence and IgE-binding capacity of germin-like proteins in citrus fruits other than oranges. We describe five patients with immediate allergic reactions after orange ingestion. All patients underwent skin prick tests (SPT) to aeroallergens and common food allergens, prick-by-prick testing with orange, lemon, and mandarin (pulp, peel, seeds), total IgE, specific IgE (sIgE), anaphylaxis scoring (oFASS), and the Food Allergy Quality of Life Questionnaire (FAQLQ-AF). Protein extracts from peel and pulp of orange, lemon, and mandarin were analyzed by Bradford assay, SDS-PAGE, and IgE immunoblotting using patient sera. Selected bands were identified by peptide mass fingerprinting. A 23 kDa band was recognized by all five patients in orange (pulp and peel), lemon (peel), and mandarin (peel). This band was consistent with Cit s 1, a germin-like protein already annotated in the IUIS allergen database for orange but not for lemon or mandarin. Peptide fingerprinting confirmed the germin-like identity of the 23 kDa bands in all three citrus species. Germin-like proteins of approximately 23 kDa were identified as IgE-binding components in peel extracts of orange, lemon, and mandarin, and in orange pulp. These findings suggest a potential shared allergen across citrus species that may contribute to allergic reactions independent of LTP sensitization. Full article
(This article belongs to the Section Molecular Plant Sciences)
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16 pages, 3000 KiB  
Article
Metabolic Variations in Bamboo Shoot Boiled Liquid During Pediococcus pentosaceus B49 Fermentation
by Juqing Huang, Meng Sun, Xuefang Guan, Lingyue Zhong, Jie Li, Qi Wang and Shizhong Zhang
Foods 2025, 14(15), 2731; https://doi.org/10.3390/foods14152731 - 5 Aug 2025
Abstract
Bamboo shoot boiled liquid (BSBL), a processing byproduct containing soluble proteins, peptides, amino acids, carbohydrates, and phenolics, is typically discarded, causing resource waste and environmental issues. This study analyzed metabolic changes in BSBL during Pediococcus pentosaceus B49 fermentation. The result of partial least [...] Read more.
Bamboo shoot boiled liquid (BSBL), a processing byproduct containing soluble proteins, peptides, amino acids, carbohydrates, and phenolics, is typically discarded, causing resource waste and environmental issues. This study analyzed metabolic changes in BSBL during Pediococcus pentosaceus B49 fermentation. The result of partial least squares discriminant analysis (PLS-DA) revealed significant metabolite profile differences across fermentation times (0 h, 24 h, 48 h, 72 h, 96 h). The most substantial alterations occurred within the first 24 h, followed by stabilization. Compared to unfermented BSBL, fermented samples exhibited significantly elevated signal intensities for 5,7-dimethoxyflavone, cinnamic acid, 3,4-dihydro-2H-1-benzopyran-2-one, 6,8-dimethyl-4-hydroxycoumarin, and 2-hydroxycinnamic acid (p < 0.05), showing upward trends over time. Conversely, (+)-gallocatechin intensity decreased gradually. Bitter peptides, such as alanylisoleucine, isoleucylisoleucine, leucylvaline, and phenylalanylisoleucine, in BSBL exhibited a significant reduction following fermentation with P. pentosaceus B49 (p < 0.05). KEGG enrichment indicated tyrosine metabolism (ko00350) and arginine/proline metabolism (ko00330) as the most impacted pathways. These findings elucidate metabolic regulation in BSBL fermentation, supporting development of functional fermented bamboo products. Full article
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34 pages, 9516 KiB  
Article
Proteus sp. Strain JHY1 Synergizes with Exogenous Dopamine to Enhance Rice Growth Performance Under Salt Stress
by Jing Ji, Baoying Ma, Runzhong Wang and Tiange Li
Microorganisms 2025, 13(8), 1820; https://doi.org/10.3390/microorganisms13081820 - 4 Aug 2025
Abstract
Soil salinization severely restricts crop growth and presents a major challenge to global agriculture. In this study, a plant-growth-promoting rhizobacterium (PGPR) was isolated and identified as Proteus sp. through 16S rDNA analysis and was subsequently named Proteus sp. JHY1. Under salt stress, exogenous [...] Read more.
Soil salinization severely restricts crop growth and presents a major challenge to global agriculture. In this study, a plant-growth-promoting rhizobacterium (PGPR) was isolated and identified as Proteus sp. through 16S rDNA analysis and was subsequently named Proteus sp. JHY1. Under salt stress, exogenous dopamine (DA) significantly enhanced the production of indole-3-acetic acid and ammonia by strain JHY1. Pot experiments revealed that both DA and JHY1 treatments effectively alleviated the adverse effects of 225 mM NaCl on rice, promoting biomass, plant height, and root length. More importantly, the combined application of DA-JHY1 showed a significant synergistic effect in mitigating salt stress. The treatment increased the chlorophyll content, net photosynthetic rate, osmotic regulators (proline, soluble sugars, and protein), and reduced lipid peroxidation. The treatment also increased soil nutrients (ammoniacal nitrogen and available phosphorus), enhanced soil enzyme activities (sucrase and alkaline phosphatase), stabilized the ion balance (K+/Na+), and modulated the soil rhizosphere microbial community by increasing beneficial bacteria, such as Actinobacteria and Firmicutes. This study provides the first evidence that the synergistic effect of DA and PGPR contributes to enhanced salt tolerance in rice, offering a novel strategy for alleviating the adverse effects of salt stress on plant growth. Full article
(This article belongs to the Section Plant Microbe Interactions)
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28 pages, 1287 KiB  
Article
Ferrocene-Catalyzed Aromatization and Competitive Oxidative Ring Transformations of 1,2-Dihydro-1-Arylpyridazino[4,5-d]Pyridazines
by Dániel Hutai, Tibor Zs. Nagy, Veronika Emődi and Antal Csámpai
Catalysts 2025, 15(8), 742; https://doi.org/10.3390/catal15080742 - 4 Aug 2025
Abstract
This paper presents the expected and unexpected, but typically substituent-dependent, ferrocene-catalyzed DDQ-mediated oxidative transformations of a series of 5,8-bis(methylthio)-1-aryl-1,2-dihydropyridazino[4,5-d]pyridazines and 8-(3,5-dimethyl-1H-pyrazol-1-yl)-5-(methylthio)-1-aryl-1,2-dihydropyridazino[4,5-d]pyridazines. Under noncatalytic conditions the reactions were sluggish, mainly producing a substantial amount of undefined [...] Read more.
This paper presents the expected and unexpected, but typically substituent-dependent, ferrocene-catalyzed DDQ-mediated oxidative transformations of a series of 5,8-bis(methylthio)-1-aryl-1,2-dihydropyridazino[4,5-d]pyridazines and 8-(3,5-dimethyl-1H-pyrazol-1-yl)-5-(methylthio)-1-aryl-1,2-dihydropyridazino[4,5-d]pyridazines. Under noncatalytic conditions the reactions were sluggish, mainly producing a substantial amount of undefined tarry materials; nevertheless, the ferrocene-catalyzed reactions of the 5,8-bis(methylthio)-substituted precursors gave the aromatic products the expected aromatic products in low yields. Their formation was accompanied by ring transformations proceeding via aryne-generating fragmentation/Diels–Alder (DA)/N2-releasing retro Diels–Alder (rDA) sequence to construct arene-fused phthalazines. On the other hand, neither the noncatalytic nor the catalytic reactions of the 8-pyrazolyl-5-methylthio-substituted dihydroaromatics yielded the expected aromatic products. Instead, depending on their substitution pattern, the catalytic reactions of these pyrazolyl-substituted precursors also led to the formation of dearylated arene-fused phthalazines competing with an unprecedented multistep fragmentation sequence terminated by the hydrolysis of cationic intermediates to give 4-(methylthio)pyridazino[4,5-d]pyridazin-1(2H)-one and the corresponding 3,5-dimethyl-1-aryl-1H-pyrazole. When 0.6 equivalents of DDQ were applied in freshly absolutized THF, a representative pyrazolyl-substituted model underwent an oxidative coupling to give a dimer formed by the interaction of the cationic intermediate, and a part of the N-nucleophilic precursor remained intact. A systematic computational study was conducted on these intriguing reactions to support their complex mechanisms proposed on the basis of the structures of the isolated products. Full article
(This article belongs to the Special Issue Catalysis in Heterocyclic and Organometallic Synthesis, 3rd Edition)
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19 pages, 2441 KiB  
Article
Simulation and Statistical Validation Method for Evaluating Daylighting Performance in Hot Climates
by Nivin Sherif, Ahmed Yehia and Walaa S. E. Ismaeel
Urban Sci. 2025, 9(8), 303; https://doi.org/10.3390/urbansci9080303 - 4 Aug 2025
Abstract
This study investigates the influence of façade-design parameters on daylighting performance in hot arid climates, with a particular focus on Egypt. A total of nine façade configurations of a residential building were modeled and simulated using Autodesk Revit and Insight 360, varying three [...] Read more.
This study investigates the influence of façade-design parameters on daylighting performance in hot arid climates, with a particular focus on Egypt. A total of nine façade configurations of a residential building were modeled and simulated using Autodesk Revit and Insight 360, varying three critical variables: glazing type (clear, blue, and dark), Window-to-Wall Ratio (WWR) of 15%, 50%, 75%, and indoor wall finish (light, moderate, dark) colors. These were compared to the Leadership in Energy and Environmental Design (LEED) daylighting quality thresholds. The results revealed that clear glazing paired with high WWR (75%) achieved the highest Spatial Daylight Autonomy (sDA), reaching up to 92% in living spaces. However, this also led to elevated Annual Sunlight Exposure (ASE), with peak values of 53%, exceeding the LEED discomfort threshold of 10%. Blue and dark glazing types successfully reduced ASE to as low as 0–13%, yet often resulted in underlit spaces, especially in private rooms such as bedrooms and bathrooms, with sDA values falling below 20%. A 50% WWR emerged as the optimal balance, providing consistent daylight distribution while maintaining ASE within acceptable limits (≤33%). Similarly, moderate color wall finishes delivered the most balanced lighting performance, enhancing sDA by up to 30% while controlling reflective glare. Statistical analysis using Pearson correlation revealed a strong positive relationship between sDA and ASE (r = 0.84) in highly glazed, clear glass scenarios. Sensitivity analysis further indicated that low WWR configurations of 15% were highly influenced by glazing and finishing types, leading to variability in daylight metrics reaching ±40%. The study concludes that moderate glazing (blue), medium WWR (50%), and moderate color indoor finishes provide the most robust daylighting performance across diverse room types. These findings support an evidence-based approach to façade design, promoting visual comfort, daylight quality, and sustainable building practices. Full article
(This article belongs to the Topic Application of Smart Technologies in Buildings)
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21 pages, 1932 KiB  
Article
Exploring Agronomic Management Strategies to Improve Millet, Sorghum, Peanuts and Rice in Senegal Using the DSSAT Models
by Walter E. Baethgen, Adama Faye and Mbaye Diop
Agronomy 2025, 15(8), 1882; https://doi.org/10.3390/agronomy15081882 - 4 Aug 2025
Abstract
Achieving food security for a growing population under a changing climate is a key concern in Senegal, where agriculture employs 77% of the workforce with a majority of small farmers who rely on the production of crops for their subsistence and for income [...] Read more.
Achieving food security for a growing population under a changing climate is a key concern in Senegal, where agriculture employs 77% of the workforce with a majority of small farmers who rely on the production of crops for their subsistence and for income generation. Moreover, due to the underproductive soils and variable rainfall, Senegal depends on imports to fulfil 70% of its food requirements. In this research, we considered four crops that are crucial for Senegalese agriculture: millet, sorghum, peanuts and rice. We used crop simulation models to explore existing yield gaps and optimal agronomic practices. Improving the N fertilizer management in sorghum and millet resulted in 40–100% increases in grain yields. Improved N symbiotic fixation in peanuts resulted in yield increases of 20–100% with highest impact in wetter locations. Optimizing irrigation management and N fertilizer use resulted in 20–40% gains. The best N fertilizer strategy for sorghum and millet included applying low rates at sowing and in early development stages and adjusting a third application, considering the expected rainfall. Peanut yields of the variety 73-33 were higher than Fleur-11 in all locations, and irrigation showed no clear economic advantage. The best N fertilizer management for rainfed rice included applying 30 kg N/ha at sowing, 25 days after sowing (DAS) and 45 DAS. The best combination of sowing dates for a possible double rice crop depended on irrigation costs, with a first crop planted in January or March and a second crop planted in July. Our work confirmed results obtained in field research experiments and identified management practices for increasing productivity and reducing yield variability. Those crop management practices can be implemented in pilot experiments to further validate the results and to disseminate best management practices for farmers in Senegal. Full article
(This article belongs to the Section Farming Sustainability)
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12 pages, 480 KiB  
Article
A Novel Deep Learning Model for Predicting Colorectal Anastomotic Leakage: A Pioneer Multicenter Transatlantic Study
by Miguel Mascarenhas, Francisco Mendes, Filipa Fonseca, Eduardo Carvalho, Andre Santos, Daniela Cavadas, Guilherme Barbosa, Antonio Pinto da Costa, Miguel Martins, Abdullah Bunaiyan, Maísa Vasconcelos, Marley Ribeiro Feitosa, Shay Willoughby, Shakil Ahmed, Muhammad Ahsan Javed, Nilza Ramião, Guilherme Macedo and Manuel Limbert
J. Clin. Med. 2025, 14(15), 5462; https://doi.org/10.3390/jcm14155462 - 3 Aug 2025
Viewed by 56
Abstract
Background/Objectives: Colorectal anastomotic leak (CAL) is one of the most severe postoperative complications in colorectal surgery, impacting patient morbidity and mortality. Current risk assessment methods rely on clinical and intraoperative factors, but no real-time predictive tool exists. This study aimed to develop [...] Read more.
Background/Objectives: Colorectal anastomotic leak (CAL) is one of the most severe postoperative complications in colorectal surgery, impacting patient morbidity and mortality. Current risk assessment methods rely on clinical and intraoperative factors, but no real-time predictive tool exists. This study aimed to develop an artificial intelligence model based on intraoperative laparoscopic recording of the anastomosis for CAL prediction. Methods: A convolutional neural network (CNN) was trained with annotated frames from colorectal surgery videos across three international high-volume centers (Instituto Português de Oncologia de Lisboa, Hospital das Clínicas de Ribeirão Preto, and Royal Liverpool University Hospital). The dataset included a total of 5356 frames from 26 patients, 2007 with CAL and 3349 showing normal anastomosis. Four CNN architectures (EfficientNetB0, EfficientNetB7, ResNet50, and MobileNetV2) were tested. The models’ performance was evaluated using their sensitivity, specificity, accuracy, and area under the receiver operating characteristic (AUROC) curve. Heatmaps were generated to identify key image regions influencing predictions. Results: The best-performing model achieved an accuracy of 99.6%, AUROC of 99.6%, sensitivity of 99.2%, specificity of 100.0%, PPV of 100.0%, and NPV of 98.9%. The model reliably identified CAL-positive frames and provided visual explanations through heatmaps. Conclusions: To our knowledge, this is the first AI model developed to predict CAL using intraoperative video analysis. Its accuracy suggests the potential to redefine surgical decision-making by providing real-time risk assessment. Further refinement with a larger dataset and diverse surgical techniques could enable intraoperative interventions to prevent CAL before it occurs, marking a paradigm shift in colorectal surgery. Full article
(This article belongs to the Special Issue Updates in Digestive Diseases and Endoscopy)
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29 pages, 959 KiB  
Review
Machine Learning-Driven Insights in Cancer Metabolomics: From Subtyping to Biomarker Discovery and Prognostic Modeling
by Amr Elguoshy, Hend Zedan and Suguru Saito
Metabolites 2025, 15(8), 514; https://doi.org/10.3390/metabo15080514 - 1 Aug 2025
Viewed by 199
Abstract
Cancer metabolic reprogramming plays a critical role in tumor progression and therapeutic resistance, underscoring the need for advanced analytical strategies. Metabolomics, leveraging mass spectrometry and nuclear magnetic resonance (NMR) spectroscopy, offers a comprehensive and functional readout of tumor biochemistry. By enabling both targeted [...] Read more.
Cancer metabolic reprogramming plays a critical role in tumor progression and therapeutic resistance, underscoring the need for advanced analytical strategies. Metabolomics, leveraging mass spectrometry and nuclear magnetic resonance (NMR) spectroscopy, offers a comprehensive and functional readout of tumor biochemistry. By enabling both targeted metabolite quantification and untargeted profiling, metabolomics captures the dynamic metabolic alterations associated with cancer. The integration of metabolomics with machine learning (ML) approaches further enhances the interpretation of these complex, high-dimensional datasets, providing powerful insights into cancer biology from biomarker discovery to therapeutic targeting. This review systematically examines the transformative role of ML in cancer metabolomics. We discuss how various ML methodologies—including supervised algorithms (e.g., Support Vector Machine, Random Forest), unsupervised techniques (e.g., Principal Component Analysis, t-SNE), and deep learning frameworks—are advancing cancer research. Specifically, we highlight three major applications of ML–metabolomics integration: (1) cancer subtyping, exemplified by the use of Similarity Network Fusion (SNF) and LASSO regression to classify triple-negative breast cancer into subtypes with distinct survival outcomes; (2) biomarker discovery, where Random Forest and Partial Least Squares Discriminant Analysis (PLS-DA) models have achieved >90% accuracy in detecting breast and colorectal cancers through biofluid metabolomics; and (3) prognostic modeling, demonstrated by the identification of race-specific metabolic signatures in breast cancer and the prediction of clinical outcomes in lung and ovarian cancers. Beyond these areas, we explore applications across prostate, thyroid, and pancreatic cancers, where ML-driven metabolomics is contributing to earlier detection, improved risk stratification, and personalized treatment planning. We also address critical challenges, including issues of data quality (e.g., batch effects, missing values), model interpretability, and barriers to clinical translation. Emerging solutions, such as explainable artificial intelligence (XAI) approaches and standardized multi-omics integration pipelines, are discussed as pathways to overcome these hurdles. By synthesizing recent advances, this review illustrates how ML-enhanced metabolomics bridges the gap between fundamental cancer metabolism research and clinical application, offering new avenues for precision oncology through improved diagnosis, prognosis, and tailored therapeutic strategies. Full article
(This article belongs to the Special Issue Nutritional Metabolomics in Cancer)
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14 pages, 2239 KiB  
Article
Marsupenaeus japonicus HSP90’s Function Under Low Temperature Stress
by Xueqiong Bian, Xianyun Ren, Shaoting Jia, Tian Gao, Junxia Wang, Jiajia Wang, Ping Liu, Jian Li and Jitao Li
Biology 2025, 14(8), 966; https://doi.org/10.3390/biology14080966 (registering DOI) - 1 Aug 2025
Viewed by 169
Abstract
Molecular chaperones, especially heat shock proteins (HSPs) have vital functions in cells’ responses to stress. Here, we cloned and sequenced the complete complementary DNA encoding HSP90 (MjHSP90) from the shrimp Marsupenaeus japonicus. The MjHSP90 cDNA comprised 3162 bp, including a [...] Read more.
Molecular chaperones, especially heat shock proteins (HSPs) have vital functions in cells’ responses to stress. Here, we cloned and sequenced the complete complementary DNA encoding HSP90 (MjHSP90) from the shrimp Marsupenaeus japonicus. The MjHSP90 cDNA comprised 3162 bp, including a 2172 bp coding region encoding a 724 amino acid-protein (predicted molecular mass = 83.12 kDa). Homology and phylogenetic analyses showed that MjHSP90 was highly conserved and most homologous to Litopenaeus vannamei HSP90. MjHSP90 is expressed in all tested tissues, with high expression in gill tissue and the hepatopancreas. Cold stress significantly upregulated MjHSP90 expression in the gill and hepatopancreas (p < 0.05). Following RNA interference knockdown of MjHSP90, the cold stress-related death rate of the shrimp increased significantly, accompanied by significantly upregulated expression of apoptosis-related genes Mjcaspase-3 and Mjbcl-2 (p < 0.05) and an increase in the number of apoptotic cells. The results indicated that MjHSP90 might play a pivotal role in the shrimp’s immune response to cold stress. Full article
(This article belongs to the Section Biochemistry and Molecular Biology)
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15 pages, 2424 KiB  
Article
Cyanuric Chloride with the s-Triazine Ring Fabricated by Interfacial Polymerization for Acid-Resistant Nanofiltration
by Zhuangzhuang Tian, Yun Yin, Jiandong Wang, Xiuling Ao, Daijun Liu, Yang Jin, Jun Li and Jianjun Chen
Membranes 2025, 15(8), 231; https://doi.org/10.3390/membranes15080231 - 1 Aug 2025
Viewed by 207
Abstract
Nanofiltration (NF) is considered a competitive purification method for acidic stream treatments. However, conventional thin-film composite NF membranes degrade under acid exposures, limiting their applications in industrial acid treatment. For example, wet-process phosphoric acid contains impurities of multivalent metal ions, but NF membrane [...] Read more.
Nanofiltration (NF) is considered a competitive purification method for acidic stream treatments. However, conventional thin-film composite NF membranes degrade under acid exposures, limiting their applications in industrial acid treatment. For example, wet-process phosphoric acid contains impurities of multivalent metal ions, but NF membrane technologies for impurity removal under harsh conditions are still immature. In this work, we develop a novel strategy of acid-resistant nanofiltration membranes based on interfacial polymerization (IP) of polyethyleneimine (PEI) and cyanuric chloride (CC) with the s-triazine ring. The IP process was optimized by orthogonal experiments to obtain positively charged PEI-CC membranes with a molecular weight cut-off (MWCO) of 337 Da. We further applied it to the approximate industrial phosphoric acid purification condition. In the tests using a mixed solution containing 20 wt% P2O5, 2 g/L Fe3+, 2 g/L Al3+, and 2 g/L Mg2+ at 0.7 MPa and 25 °C, the NF membrane achieved 56% rejection of Fe, Al, and Mg and over 97% permeation of phosphorus. In addition, the PEI-CC membrane exhibited excellent acid resistance in the 48 h dynamic acid permeation experiment. The simple fabrication procedure of PEI-CC membrane has excellent acid resistance and great potential for industrial applications. Full article
(This article belongs to the Special Issue Nanofiltration Membranes for Precise Separation)
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13 pages, 935 KiB  
Article
The Physiological Response of the Fiddler Crab Austruca lactea to Anthropogenic Low-Frequency Substrate-Borne Vibrations
by Soobin Joo, Jaemin Cho and Taewon Kim
Biology 2025, 14(8), 962; https://doi.org/10.3390/biology14080962 (registering DOI) - 31 Jul 2025
Viewed by 123
Abstract
Anthropogenic vibrational disturbances in the marine environment can affect benthic organisms, but these effects on marine animals remain poorly understood. To examine whether anthropogenic substrate-borne vibrations induce physiological stress in the white-clawed fiddler crab (Austruca lactea), individuals were exposed to vibrations [...] Read more.
Anthropogenic vibrational disturbances in the marine environment can affect benthic organisms, but these effects on marine animals remain poorly understood. To examine whether anthropogenic substrate-borne vibrations induce physiological stress in the white-clawed fiddler crab (Austruca lactea), individuals were exposed to vibrations at 120 Hz and 250 Hz (~100 dB re 1 µm/s2), and physiological indicators were measured. Lactate and ATP concentrations in the leg muscle were measured, and heat shock protein 70 kDa (HSP70) gene expression in the hepatopancreas was analyzed using RT-PCR with newly designed primers. At 120 Hz, ATP and lactate levels in the leg muscle did not differ significantly between the exposure and control groups. However, at 250 Hz, ATP levels were lower and lactate levels were higher in the exposure group compared to the control. HSP70 gene expression in the hepatopancreas did not differ significantly between the exposure and control groups at either frequency, although one individual exposed to 250 Hz exhibited markedly elevated expression, inducing higher expression variability in the exposed group. These results suggest that anthropogenic vibrational pollution may induce physiological stress in A. lactea, and that such physiological indices could serve as biomarkers for assessing vibroacoustic pollution on marine animals. Full article
(This article belongs to the Section Physiology)
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30 pages, 427 KiB  
Article
From The Demon to the Secret Voice: Archetypal Echoes and Oral Culture in 19th Century Romantic Poetry
by Gül Mükerrem Öztürk
Humanities 2025, 14(8), 160; https://doi.org/10.3390/h14080160 - 31 Jul 2025
Viewed by 128
Abstract
The first half of the 19th century witnessed the rise of Romantic poetry, which focused in depth on individual consciousness, inner worlds, and metaphysical inquiries. This poetic orientation became particularly evident in works centred on themes such as solitude, alienation, and existential quests. [...] Read more.
The first half of the 19th century witnessed the rise of Romantic poetry, which focused in depth on individual consciousness, inner worlds, and metaphysical inquiries. This poetic orientation became particularly evident in works centred on themes such as solitude, alienation, and existential quests. Within this context, the present study aims to examine the archetypal and poetic resonances of the poetic voice in Mihail Lermontov’s poem The Demon, based on its sixth and final version dated 1841, in relation to Nikoloz Baratashvili’s poem Secret Voice. Lermontov’s poem is analyzed through the English translation by Charles Johnston, published in 1983, while Baratashvili’s poem is discussed based on the 24-line version included in the fifth edition (1895) of the anthology Poems and Letters (Leksebi da Tserilebi). This study explores the thematic and structural similarities between the two poems within the framework of comparative literature and psychoanalytic criticism, focusing on Romantic archetypes, the uncanny, the shadow figure, and ontological solitude. Furthermore, the dialogue established between Lermontov’s demonic narrator and Baratashvili’s introspective poetic voice reopens discussions on the boundaries of cultural memory, oral narrative patterns, and poetic identity. Ultimately, this comparative analysis reveals the implicit influences of The Demon on Georgian poetry and discusses the intercultural resonances of themes such as voice, self, and archetype in Romantic poetry. Full article
(This article belongs to the Section Literature in the Humanities)
19 pages, 4083 KiB  
Article
Multiplex CRISPR/Cas9 Editing of Rice Prolamin and GluA Glutelin Genes Reveals Subfamily-Specific Effects on Seed Protein Composition
by María H. Guzmán-López, Susana Sánchez-León, Miriam Marín-Sanz and Francisco Barro
Plants 2025, 14(15), 2355; https://doi.org/10.3390/plants14152355 - 31 Jul 2025
Viewed by 112
Abstract
Rice seed storage proteins (SSPs) play a critical role in determining the nutritional quality, cooking properties, and digestibility of rice. To enhance seed quality, CRISPR/Cas9 genome editing was applied to modify SSP composition by targeting genes encoding 13 kDa prolamins and type A [...] Read more.
Rice seed storage proteins (SSPs) play a critical role in determining the nutritional quality, cooking properties, and digestibility of rice. To enhance seed quality, CRISPR/Cas9 genome editing was applied to modify SSP composition by targeting genes encoding 13 kDa prolamins and type A glutelins. Three CRISPR/Cas9 constructs were designed: one specific to the 13 kDa prolamin subfamily and two targeting conserved GluA glutelin regions. Edited T0 and T1 lines were generated and analyzed using InDel analysis, SDS-PAGE, Bradford assay, and RP-HPLC. Insertions were more frequent than deletions, accounting for 56% and 74% of mutations in prolamin and glutelin genes, respectively. Editing efficiency varied between sgRNAs. All lines with altered protein profiles contained InDels in target genes. SDS-PAGE confirmed the absence or reduction in bands corresponding to 13 kDa prolamins or GluA subunits, showing consistent profiles among lines carrying the same construct. Quantification revealed significant shifts in SSP composition, including increased albumin and globulin content. Prolamin-deficient lines showed reduced prolamins, while GluA-deficient lines exhibited increased prolamins. Total protein content was significantly elevated in all edited lines, suggesting enrichment in lysine-rich fractions. These findings demonstrate that CRISPR/Cas9-mediated editing of SSP genes can effectively reconfigure the rice protein profile and enhance its nutritional value. Full article
(This article belongs to the Special Issue Advances and Applications of Genome Editing in Plants)
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14 pages, 863 KiB  
Article
The Effect of the Extraction Temperature on the Colligative, Hydrodynamic and Rheological Properties of Psyllium Husk Mucilage Raw Solutions
by Anna Ptaszek, Marta Liszka-Skoczylas and Urszula Goik
Molecules 2025, 30(15), 3219; https://doi.org/10.3390/molecules30153219 - 31 Jul 2025
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Abstract
The aim of the research was to analyse the effect of different extraction temperatures on the colligative, hydrodynamic, and rheological properties of a water-soluble AXs fractions. The research material consisted of raw water extracts of arabinoxylans obtained from the husk at the following [...] Read more.
The aim of the research was to analyse the effect of different extraction temperatures on the colligative, hydrodynamic, and rheological properties of a water-soluble AXs fractions. The research material consisted of raw water extracts of arabinoxylans obtained from the husk at the following temperatures: 40 °C (AX40), 60 °C (AX60), 80 °C (AX80), and 100 °C (AX100). These were characterised in terms of their hydrodynamic, osmotic, and rheological properties, as well as the average molecular mass of the polysaccharide fractions. An increase in extraction temperature resulted in an increase in weight-average molecular mass, from 2190 kDa (AX40) to 3320 kDa (AX100). The values of the osmotic average molecular mass were higher than those obtained from GPC, and decreased with increasing extraction temperature. The dominance of biopolymer–biopolymer interactions was evident in the shape of the autocorrelation function, which did not disappear as the extraction temperature and concentration increased. Furthermore, the values of the second virial coefficient were negative, which is indicative of the tendency of biopolymer chains to aggregate. The rheological properties of the extracts changed from being described by a power-law model (AX40 and AX60) to being described by the full non-linear De Kee model (AX80 and AX100). Full article
(This article belongs to the Section Physical Chemistry)
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