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17 pages, 4942 KiB  
Article
Detection of XPO1E571K Gene Mutation from Cell-Free DNA in Blood Circulation of Lymphoma Patients by FAST-COLD PCR
by Suwit Duangmano, Natsima Viriyaadhammaa, Pinyaphat Khamphikham, Nutjeera Intasai, Adisak Tantiworawit, Teerada Daroontum, Sawitree Chiampanichayakul and Songyot Anuchapreeda
Int. J. Mol. Sci. 2025, 26(15), 7324; https://doi.org/10.3390/ijms26157324 - 29 Jul 2025
Viewed by 187
Abstract
The XPO1 (exportin 1) gene encodes exportin 1 protein responsible for transporting proteins and RNA from the nucleus to the cytoplasm. It has been used as a biomarker for lymphoma detection. XPO1E571K mutation has been frequently observed and identified as [...] Read more.
The XPO1 (exportin 1) gene encodes exportin 1 protein responsible for transporting proteins and RNA from the nucleus to the cytoplasm. It has been used as a biomarker for lymphoma detection. XPO1E571K mutation has been frequently observed and identified as a good prognostic indicator for lymphoma patients. The detection of a target molecule released by lymphoma cells into blood circulation (cell-free circulating tumor DNA, cfDNA) is a better method than tissue biopsy. However, cfDNA concentration in blood circulation is very low in cancer patients. Therefore, a precise and sensitive method is needed. In this study, cfDNA was extracted, and then the XPO1 gene was detected and amplified using conventional PCR. Sanger sequencing was employed to verify the DNA sequences. FAST-COLD-PCR was developed to detect XPO1E571K gene mutation using a CFX96 Touch Real-Time PCR System. The optimal critical temperature (Tc) was 73.3 °C, allowing selective amplification of XPO1E571K mutant DNA while wild-type XPO1 could not be amplified. XPO1E571K gene mutation can be detected by this method with high specificity and sensitivity in lymphoma patients. This approach facilitates rapid and straightforward detection in a timely manner after the diagnosis. Accordingly, the optimized FAST-COLD-PCR conditions can be used as a prototype for XPO1E571K mutant detection in lymphoma patients. Full article
(This article belongs to the Special Issue Molecular Research in Hematologic Malignancies)
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32 pages, 1770 KiB  
Article
Regional Patterns in Weed Composition of Maize Fields in Eastern Hungary: The Balance of Environmental and Agricultural Factors
by Mihály Zalai, Erzsébet Tóth, János György Nagy and Zita Dorner
Agronomy 2025, 15(8), 1814; https://doi.org/10.3390/agronomy15081814 - 26 Jul 2025
Viewed by 407
Abstract
The primary aim of this study was to explore the influence of abiotic factors on weed development in maize fields, with the goal of informing more effective weed management practices. We focused on identifying key environmental, edaphic, and agricultural variables that contribute to [...] Read more.
The primary aim of this study was to explore the influence of abiotic factors on weed development in maize fields, with the goal of informing more effective weed management practices. We focused on identifying key environmental, edaphic, and agricultural variables that contribute to weed infestations, particularly before the application of spring herbicide treatments. Field investigations were conducted from 2018 to 2021 across selected maize-growing regions in Hungary. Over the four-year period, a total of 51 weed species were recorded, with Echinochloa crus-galli, Chenopodium album, Portulaca oleracea, and Hibiscus trionum emerging as the most prevalent taxa. Collectively, these four species accounted for more than half (52%) of the total weed cover. Altogether, the 20 most dominant species contributed 95% of the overall weed coverage. The analysis revealed that weed cover, species richness, and weed diversity were significantly affected by soil properties, nutrient levels, geographic location, and tillage systems. The results confirm that the composition of weed species was influenced by several environmental and management-related factors, including soil parameters, geographical location, annual precipitation, tillage method, and fertilizer application. Environmental factors collectively explained a slightly higher proportion of the variance (13.37%) than farming factors (12.66%) at a 90% significance level. Seasonal dynamics and crop rotation history also played a notable role in species distribution. Nutrient inputs, particularly nitrogen, phosphorus, and potassium, influenced both species diversity and floristic composition. Deep tillage practices favored the proliferation of perennial species, whereas shallow cultivation tended to promote annual weeds. Overall, the composition of weed vegetation proved to be a valuable indicator of site-specific soil conditions and agricultural practices. These findings underscore the need to tailor weed management strategies to local environmental and soil contexts for sustainable crop production. Full article
(This article belongs to the Special Issue State-of-the-Art Research on Weed Populations and Community Dynamics)
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27 pages, 15353 KiB  
Article
Drought Evolution in the Yangtze and Yellow River Basins and Its Dual Impact on Ecosystem Carbon Sequestration
by Yuanhe Yu, Huan Deng, Shupeng Gao and Jinliang Wang
Agriculture 2025, 15(14), 1552; https://doi.org/10.3390/agriculture15141552 - 19 Jul 2025
Viewed by 249
Abstract
As an extreme event driven by global climate change, drought poses a severe threat to terrestrial ecosystems. The Yangtze River Basin (YZRB) and Yellow River Basin (YRB) are key ecological barriers and economic zones in China, holding strategic importance for exploring the evolution [...] Read more.
As an extreme event driven by global climate change, drought poses a severe threat to terrestrial ecosystems. The Yangtze River Basin (YZRB) and Yellow River Basin (YRB) are key ecological barriers and economic zones in China, holding strategic importance for exploring the evolution of drought patterns and their ecological impacts. Using meteorological station data and Climatic Research Unit Gridded Time Series (CRU TS) data, this study analyzed the spatiotemporal characteristics of drought evolution in the YZRB and YRB from 1961 to 2021 using the standardized precipitation evapotranspiration index (SPEI) and run theory. Additionally, this study examined drought effects on ecosystem carbon sequestration (CS) at the city, county, and pixel scales. The results revealed the following: (1) the CRU data effectively captured precipitation (annual r = 0.94) and temperature (annual r = 0.95) trends in both basins, despite significantly underestimating winter temperatures, with the optimal SPEI calculation accuracy found at the monthly scale; (2) both basins experienced frequent autumn–winter droughts, with the YRB facing stronger droughts, including nine events which exceeded 10 months (the longest lasting 25 months), while the mild droughts increased in frequency and extreme intensity; and (3) the drought impacts on CS demonstrated a significant threshold effect, where the intensified drought unexpectedly enhanced CS in western regions, such as the Garzê Autonomous Prefecture in Sichuan Province and Changdu City in the Xizang Autonomous Region, but suppressed CS in the midstream and downstream plains. The CS responded positively under weak drought conditions but declined once the drought intensity surpassed the threshold. This study revealed a nonlinear relationship between drought and CS across climatic zones, thereby providing a scientific foundation for enhancing ecological resilience. Full article
(This article belongs to the Section Ecosystem, Environment and Climate Change in Agriculture)
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9 pages, 214 KiB  
Article
The Communication Satisfaction of Geriatric Patients Treated by Dental Students and Dentists in a University Dental Clinic: A Cross-Sectional Study
by Carla Semedo, Joana Costa and Elisa Kern de Castro
Geriatrics 2025, 10(4), 93; https://doi.org/10.3390/geriatrics10040093 - 14 Jul 2025
Viewed by 718
Abstract
Background/Objectives: With aging linked to increased oral health conditions, the communication skills of dental professionals are vital to ensure patient satisfaction and improve the quality of geriatric dental care. This cross-sectional study evaluated geriatric patients’ satisfaction with communication at a university dental [...] Read more.
Background/Objectives: With aging linked to increased oral health conditions, the communication skills of dental professionals are vital to ensure patient satisfaction and improve the quality of geriatric dental care. This cross-sectional study evaluated geriatric patients’ satisfaction with communication at a university dental clinic, comparing interactions with dentists and fifth-year dental students. Methods: A self-report questionnaire was administered to 111 patients, assessing sociodemographic data, general health, and satisfaction across six communication dimensions: verbal and nonverbal communication, empathy, respect, problem-solving, and support materials. The data were analyzed using Mann–Whitney U tests (α = 0.05). Results: The geriatric patients exhibited higher levels of satisfaction when interacting with dentists compared to students, particularly in the domains of nonverbal communication (p = 0.007), empathy (p = 0.035), and respect (p = 0.017). However, no statistically significant differences (p > 0.05) were observed in terms of verbal communication, problem-solving, and support materials. Conclusions: The geriatric patients demonstrated greater satisfaction with interactions with practicing dentists. These findings indicate that an attending dentist’s clinical experience enhances interpersonal interactions with geriatric patients. Therefore, developing the interpersonal skills of future dentistry professionals, as well as adapting communication to the needs of the elderly, is essential to provide more satisfactory experiences in geriatric dental care. Full article
26 pages, 9032 KiB  
Article
Relative Humidity and Air Temperature Characteristics and Their Drivers in Africa Tropics
by Isaac Kwesi Nooni, Faustin Katchele Ogou, Abdoul Aziz Saidou Chaibou, Samuel Koranteng Fianko, Thomas Atta-Darkwa and Nana Agyemang Prempeh
Atmosphere 2025, 16(7), 828; https://doi.org/10.3390/atmos16070828 - 8 Jul 2025
Viewed by 477
Abstract
In a warming climate, rising temperature are expected to influence atmospheric humidity. This study examined the spatio-temporal dynamics of temperature (TEMP) and relative humidity (RH) across Equatorial Africa from 1980 to 2020. The analysis used RH data from European Centre of Medium-range Weather [...] Read more.
In a warming climate, rising temperature are expected to influence atmospheric humidity. This study examined the spatio-temporal dynamics of temperature (TEMP) and relative humidity (RH) across Equatorial Africa from 1980 to 2020. The analysis used RH data from European Centre of Medium-range Weather Forecasts Reanalysis v.5 (ERA5) reanalysis, TEMP and precipitation (PRE) from Climate Research Unit (CRU), and soil moisture (SM) and evapotranspiration (ET) from the Global Land Evaporation Amsterdam Model (GLEAM). In addition, four teleconnection indices were considered: El Niño-Southern Oscillation (ENSO), Indian Ocean Dipole (IOD), North Atlantic Oscillation (NAO), and Pacific Decadal Oscillation (PDO). This study used the Mann–Kendall test and Sen’s slope estimator to analyze trends, alongside multiple linear regression to investigate the relationships between TEMP, RH, and key climatic variables—namely evapotranspiration (ET), soil moisture (SM), and precipitation (PRE)—as well as large-scale teleconnection indices (e.g., IOD, ENSO, PDO, and NAO) on annual and seasonal scales. The key findings are as follows: (1) mean annual TEMP exceeding 30 °C and RH less than 30% were concentrated in arid regions of the Sahelian–Sudano belt in West Africa (WAF), Central Africa (CAF) and North East Africa (NEAF). Semi-arid regions in the Sahelian–Guinean belt recorded moderate TEMP (25–30 °C) and RH (30–60%), while the Guinean coastal belt and Congo Basin experienced cooler, more humid conditions (TEMP < 20 °C, RH (60–90%). (2) Trend analysis using Mann–Kendal and Sen slope estimator analysis revealed spatial heterogeneity, with increasing TEMP and deceasing RH trends varying by region and season. (3) The warming rate was higher in arid and semi-arid areas, with seasonal rates exceeding annual averages (0.18 °C decade−1). Winter (0.27 °C decade−1) and spring (0.20 °C decade−1) exhibited the strongest warming, followed by autumn (0.18 °C decade−1) and summer (0.10 °C decade−1). (4) RH trends showed stronger seasonal decline compared to annual changes, with reduction ranging from 5 to 10% per decade in certain seasons, and about 2% per decade annually. (5) Pearson correlation analysis demonstrated a strong negative relationship between TEMP and RH with a correlation coefficient of r = − 0.60. (6) Significant associations were also observed between TEMP/RH and both climatic variables (ET, SM, PRE) and large scale-teleconnection indices (ENSO, IOD, PDO, NAO), indicating that surface conditions may reflect a combination of local response and remote climate influences. However, further analysis is needed to distinguish the extent to which local variability is independently driven versus being a response to large-scale forcing. Overall, this research highlights the physical mechanism linking TEMP and RH trends and their climatic drivers, offering insights into how these changes may impact different ecological and socio-economic sectors. Full article
(This article belongs to the Special Issue Precipitation in Africa (2nd Edition))
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12 pages, 1005 KiB  
Article
Density Functional Theory-Based Study of UC2 and Cr-Doped UO2
by Barbara Szpunar, Jayangani I. Ranasinghe and Jerzy A. Szpunar
Metals 2025, 15(7), 727; https://doi.org/10.3390/met15070727 - 29 Jun 2025
Viewed by 303
Abstract
A density functional theory-based study of UC2 and Cr-doped UO2 using the phono3py and VASP computational simulation packages is presented. Furthermore, the temperature-dependent thermal conductivities are compared to the traditional urania fuel. Doping of urania with Cr allows for improved fission [...] Read more.
A density functional theory-based study of UC2 and Cr-doped UO2 using the phono3py and VASP computational simulation packages is presented. Furthermore, the temperature-dependent thermal conductivities are compared to the traditional urania fuel. Doping of urania with Cr allows for improved fission gas retention, reducing the fission gas release and lowering the oxidation rate of UO2. The thermal conductivity calculated using the random alloy method with one U atom replaced by Cr in a supercell (CrU31O64) shows a slight decrease; however, this may be compensated for by larger grain sizes in the presence of Cr. The reduction of thermal conductivity for the 0.61 wt.% Cr substation in urania is presented. Investigated here, the UC2 metallic high-temperature fcc phase looks promising due to additional electronic contribution to conductivity. Furthermore, we found that the temperature-dependent phonon-assisted thermal conductivities for UC2 and UO2 are very similar. The elastic properties of UC2 were also evaluated and compared with UO2. The presented analysis provides information for further improvement of the design of nuclear fuels. Full article
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28 pages, 4157 KiB  
Article
Comprehensive Analysis of Genetic and Morphological Diversity in Echinochloa spp. Populations Infesting Paddy Fields in Ningxia, China
by Jinhui Li, Yi Zhang, Yan Liu, Shouhui Wei, Zhaofeng Huang, Lu Chen and Hongjuan Huang
Int. J. Mol. Sci. 2025, 26(12), 5623; https://doi.org/10.3390/ijms26125623 - 12 Jun 2025
Viewed by 341
Abstract
Barnyard grass is the most problematic weed in paddy fields in Ningxia. Its substantial morphological variation complicates both identification and control, yet the genetic diversity of barnyard grass infesting paddy fields in Ningxia has not been thoroughly studied. In this research, we analyzed [...] Read more.
Barnyard grass is the most problematic weed in paddy fields in Ningxia. Its substantial morphological variation complicates both identification and control, yet the genetic diversity of barnyard grass infesting paddy fields in Ningxia has not been thoroughly studied. In this research, we analyzed the genetic diversity of 46 barnyard grass populations from Ningxia’s paddy fields based on the assessment of morphological traits, DNA barcoding, and SCoT-targeted gene markers. Nine morphological traits were quantitatively analyzed, among which three phenological traits, i.e., leaf length, stem diameter, and plant height, exhibited notable variations. Correlational analysis revealed a positive relationship between morphological traits and multi-herbicide resistance profiles. To assess genetic diversity, four DNA barcodes (ITS, psbA, matK, and trnL-F) were used, among which ITS demonstrated the strongest potential in single-gene barcoding for barnyard grass species identification. Cluster analysis based on ITS barcode sequences was performed to group the populations into five main categories. Additionally, SCoT marker analysis using six primers was performed to classify the 46 barnyard grass samples into five groups. The results showed that the predominant barnyard grass species in Ningxia were E. colona, E. crus-galli var. Formosensis, E. crusgalli, E. oryzoides, and E. crusgalli var. Zelayensis, with E. colona being the most prevalent. The differences observed between the morphological and molecular marker-based classifications were method-dependent. However, both SCoT molecular marker technology and DNA barcoding contributed to identifying the genetic diversity of barnyard grass. Taken together, our study revealed significant morphological and genetic variations among barnyard grass populations, which correlated with herbicide sensitivity in Ningxia’s paddy fields, underscoring the necessity for an integrated weed management approach to combat this troublesome weed species. Full article
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18 pages, 2047 KiB  
Article
Optimizing Management of Alfalfa (Medicago sativa L.) Nitrogen Fertilizer Based on Critical Nitrogen Concentration Dilution Curve Model
by Yaya Duan, Yi Ling, Haiyan Li, Wenjing Chang, Jiandong Lu, Minhua Yin, Yanxia Kang, Yanlin Ma, Yayu Wang, Guangping Qi and Guoyun Shen
Plants 2025, 14(12), 1782; https://doi.org/10.3390/plants14121782 - 11 Jun 2025
Viewed by 407
Abstract
The critical nitrogen dilution curve (CNDC) model enables precise nitrogen management by quantifying the threshold of nitrogen deficiency in crops, thereby enhancing both crop productivity and nitrogen use efficiency. However, its applicability to perennial crops remains unclear. In this study, alfalfa (Medicago [...] Read more.
The critical nitrogen dilution curve (CNDC) model enables precise nitrogen management by quantifying the threshold of nitrogen deficiency in crops, thereby enhancing both crop productivity and nitrogen use efficiency. However, its applicability to perennial crops remains unclear. In this study, alfalfa (Medicago sativa L.), a perennial leguminous forage, was used as the model crop. Based on two years of field experiments, CNDC models of aboveground biomass were constructed under two nitrogen fertilizer regimes: urea (0, 80, 160, and 240 kg·ha−1, applied in a 6:2:2 basal-to-topdressing ratio) and controlled-release urea (CRU; 0, 80, 160, and 240 kg·ha−1, applied as a single basal dose). Using these models, the nitrogen nutrition index (NNI) and cumulative nitrogen deficit (Nand) models were developed to diagnose alfalfa nitrogen status, and the optimal nitrogen application rates were determined via regression analysis. The results showed that critical nitrogen concentration and aboveground biomass followed a power function relationship under both fertilizer types. For CRU treatments, parameters a and b were 3.41 and 0.20 (first cut), 3.15 and 0.12 (second cut), and 2.24 and 0.40 (third cut), respectively. For urea treatments, a and b were 3.13 and 0.35 (first cut), 2.21 and 0.16 (second cut), and 1.75 and 0.73 (third cut). The normalized root mean square error (n-RMSE) of the models ranged from 3.1% to 13%, indicating high model reliability. Based on the NNI, Nand, and yield response models, the optimal nitrogen application rates were 175.44~181.71 kg·ha−1 for urea and 145.63~153.46 kg·ha−1 for CRU, corresponding to theoretical maximum yields of 14.76~17.40 t·ha−1 and 16.76~20.66 t·ha−1, respectively. Compared to urea, CRU reduced nitrogen input by 18.41~20.47% while achieving equivalent or higher theoretical yields. This study provides a scientific basis for nitrogen status diagnosis and precision nitrogen application in alfalfa cultivation. Full article
(This article belongs to the Special Issue Advances in Plant Nutrition Responses and Stress)
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16 pages, 2715 KiB  
Article
Inter- and Intra-Specific Differences in Seed Germination Responding to Varying Osmotic Potentials in 261 Echinochloa Populations Collected from Rice Fields in Eastern China
by Aatiqa Masoom, Kai An, Yang Chen, Qigen Dai and Guoqi Chen
Agronomy 2025, 15(5), 1169; https://doi.org/10.3390/agronomy15051169 - 11 May 2025
Viewed by 453
Abstract
Echinochloa crus-galli (L.) P. Beauv. (EC), E. crus-galli var. mitis (Pursh) Petermann (ECM), and E. glabrescens Munro ex Hook.f. (EG) are all troublesome weeds and frequently managed as one species on rice (Oryza sativa) fields. To examine inter- and intra-specific differences [...] Read more.
Echinochloa crus-galli (L.) P. Beauv. (EC), E. crus-galli var. mitis (Pursh) Petermann (ECM), and E. glabrescens Munro ex Hook.f. (EG) are all troublesome weeds and frequently managed as one species on rice (Oryza sativa) fields. To examine inter- and intra-specific differences in seed germination responses to drought stresses, we conducted seed germination experiments with 57 EC, 112 ECM, and 92 EG populations. In all drought stress treatments, EC exhibited higher and faster germination than ECM and EG. Under 0 MPa, seed germinations of all populations initiated on 3 DAT (day after treatment). Accumulative seed germination percentages of EC, ECM, and EG under −0.1 MPa did not show significant differences with the same species treated with 0 MPa, while significantly decreased with the osmotic potential treated decreasing to −0.4 MPa or lower. OR50 values (the osmotic potential at which 50% germination occurs) for EC, ECM, and EG were −0.55 MPa, −0.49 MPa, and −0.45 MPa, respectively. Intra-specific variation within all three species increased as osmotic potential decreased from −0.1 MPa to −0.8 MPa. Moreover, seed germination was significantly correlated with 1000-seed weight and latitudes of population-collected locations. In four treatments, seeds produced by Echinochloa weeds growing in transplanted rice fields exhibited significantly higher germination percentages than those from direct-seeded rice fields. Full article
(This article belongs to the Section Weed Science and Weed Management)
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13 pages, 906 KiB  
Article
Baseline Sensitivity of Echinochloa crus-galli (L.) P.Beauv. and Leptochloa chinensis (L.) Nees to Flusulfinam, a New 4-Hydroxyphenylpyruvate Dioxygenase (HPPD)-Inhibiting Herbicide in Rice, in China
by Zihao Li, Xinyu Sun, Shuo Yu, He Sun, Lei Lian, Xuegang Peng, Tao Jin, Weitang Liu and Hengzhi Wang
Plants 2025, 14(10), 1425; https://doi.org/10.3390/plants14101425 - 9 May 2025
Viewed by 486
Abstract
Flusulfinam is a 4-hydroxyphenylpyruvate dioxygenase (HPPD)-inhibiting herbicide applied post-emergence (POST) to control Echinochloa crus-galli (L.) P.Beauv., Leptochloa chinensis (L.) Nees, Digitaria sanguinalis (Linn.) Scop. and other annual weeds in directly seeded and transplanted paddy fields in China, registered in September 2024. Notably, compared [...] Read more.
Flusulfinam is a 4-hydroxyphenylpyruvate dioxygenase (HPPD)-inhibiting herbicide applied post-emergence (POST) to control Echinochloa crus-galli (L.) P.Beauv., Leptochloa chinensis (L.) Nees, Digitaria sanguinalis (Linn.) Scop. and other annual weeds in directly seeded and transplanted paddy fields in China, registered in September 2024. Notably, compared with other HPPD inhibitors in rice, flusulfinam exhibits consistently high safety in both japonica and indica rice varieties. Meanwhile, flusulfinam has no target-site cross-resistance with traditional acetolactate synthase (ALS)-inhibiting, acetyl-CoA carboxylase (ACCase)-inhibiting, and auxin herbicides. Moreover, as the only heterocyclic-amide-structured herbicide in the HPPD inhibitors, it poses a low risk of metabolic cross-resistance with the other HPPD inhibitors, making it a promising candidate for managing herbicide-resistant weeds in rice fields. In this study, the baseline sensitivity to flusulfinam of E. crus-galli and L. chinensis in paddy fields in China was established using dose–response assays between June and October 2023. Thirty-nine populations of E. crus-galli and forty-three populations of L. chinensis, collected from rice fields across various major rice-producing regions in China, exhibited susceptibility to flusulfinam. The GR50 values ranged from 0.15 to 19.39 g active ingredient (a.i.) ha−1 for E. crus-galli and from 7.82 to 49.92 g a.i. ha−1 for L. chinensis, respectively, far below the field recommended rate of flusulfinam. Meanwhile, the GR50 values of E. crus-galli and L. chinensis to flusulfinam were both distributed as a unimodal curve, with baseline sensitivity (GR50b) of 6.48 g a.i. ha−1 and 22.38 g a.i. ha−1, respectively. The SI50 value showed 129.27-fold and 6.38-fold variability in flusulfinam sensitivity among the 39 E. crus-galli field populations and 43 L. chinensis filed populations, while the variability declined to 2.99-fold and 2.23-fold when the SI50b value was used. This study substantiated the efficacy of flusulfinam against E. crus-galli and L. chinensis in Chinese paddy fields and furnished a benchmark for monitoring temporal variations in the susceptibility of field populations of E. crus-galli and L. chinensis to flusulfinam. Full article
(This article belongs to the Special Issue The Bioecology and Sustainable Management of Weeds)
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23 pages, 2066 KiB  
Article
Unilateral Triple Canal Repositioning Maneuver: Principles and Design
by Marcello Cherchi
Audiol. Res. 2025, 15(3), 55; https://doi.org/10.3390/audiolres15030055 - 8 May 2025
Viewed by 1859
Abstract
Background: Benign paroxysmal positional vertigo is the most common cause of dizziness over the lifespan. Management is complicated by both a diagnostic burden (correctly interpreting specific ocular motor findings) and a therapeutic burden (selecting appropriately targeted treatment maneuvers). Purpose: Devise a [...] Read more.
Background: Benign paroxysmal positional vertigo is the most common cause of dizziness over the lifespan. Management is complicated by both a diagnostic burden (correctly interpreting specific ocular motor findings) and a therapeutic burden (selecting appropriately targeted treatment maneuvers). Purpose: Devise a canalith repositioning maneuver to treat simultaneously benign paroxysmal positional vertigo affecting any combination of semicircular canals on one side. If clinically verified, then this will simplify management. Research design: After analyzing the results of a computer simulator applied to several published maneuvers for treating benign paroxysmal positional vertigo, we used basic principles to design a maneuver that simultaneously, for all three semicircular canals on one side, advances otoliths toward the crus of each canal and prevents retreat toward the ampule of each canal and then tested the maneuver in computer simulation. Study sample: Not applicable. Intervention: Not applicable. Data collection and analysis: Not applicable. Results: We developed a maneuver that computer simulation predicts will successfully treat simultaneously benign paroxysmal positional vertigo affecting any combination of semicircular canals on one side. Conclusions: This maneuver should be tested empirically as a standalone maneuver and compared to other maneuvers. Clinical relevance statement: If the efficacy of this maneuver is clinically verified, then it will simplify management by diminishing the diagnostic burden (of determining affected canals) and treatment burden (of selecting the appropriately targeted maneuvers). Full article
(This article belongs to the Special Issue A Tribute to John M. Epley)
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25 pages, 4309 KiB  
Article
Development of Mathematical Models Using circRNA Combinations (circTulp4, circSlc8a1, and circStrn3) in Mouse Brain Tissue for Postmortem Interval Estimation
by Binghui Song, Jiewen Fu, Jie Qian, Ting He, Jingliang Cheng, Sawitree Chiampanichayakul, Songyot Anuchapreeda and Junjiang Fu
Int. J. Mol. Sci. 2025, 26(10), 4495; https://doi.org/10.3390/ijms26104495 - 8 May 2025
Viewed by 631
Abstract
The postmortem interval (PMI) is defined as the time interval between physiological death and the examination of the corpse, playing a critical role in forensic investigations. Traditional PMI estimation methods are often influenced by subjective and environmental factors. Circular RNAs (circRNAs), known for [...] Read more.
The postmortem interval (PMI) is defined as the time interval between physiological death and the examination of the corpse, playing a critical role in forensic investigations. Traditional PMI estimation methods are often influenced by subjective and environmental factors. Circular RNAs (circRNAs), known for their stability, abundance, and conservation in brain tissue, show promise as biomarkers for PMI estimation. However, research on circRNAs in this context remains limited. This study aimed to develop PMI estimation models using circRNAs across multiple temperatures. By employing semi-quantitative reverse transcription-PCR, circTulp4, circSlc8a1, and circStrn3 were identified as reliable biomarkers for mouse brain tissue. Mathematical models were constructed using the reference genes 28S rRNA, mt-co1, and circCDR1as. At 4 °C, most equations had p-values below 0.05, with the equation using circSlc8a1 as a marker exhibiting the highest goodness of fit. Validation results indicated that the equation using circTulp4 as the reference gene had the highest accuracy. When applying the combined aforementioned three circRNAs, the equation using circCDR1as as the reference gene showed better accuracy. At 25 °C, all equations had R2 values greater than 0.86, but most cubic equations had p-values above 0.05. Validation results demonstrated that the circTulp4/mt-co1 equation had the highest accuracy. When applying combined circRNAs, the R2 values improved, and long-term PMI estimation was more accurate than short-term PMI estimation. At 35 °C, the linear equations had significantly poorer goodness of fit compared to nonlinear equations, and nonlinear equations exhibited better accuracy than linear equations. When applying the combined aforementioned three circRNAs, the accuracy of the three reference genes was similar, and the accuracy of long-term PMI estimation was consistently higher than that of short-term estimation. For the three-dimensional models, all R2 values exceeded 0.75 with p-values significantly below 0.0001. Validation results demonstrated higher accuracy at 25 °C and 35 °C, with superior performance for long-term PMI estimation. In summary, this study constructed PMI estimation models under multiple temperature conditions based on highly expressed circRNAs in mouse brain tissue, highlighting circTulp4, circSlc8a1, and circStrn3 as novel biomarkers. These findings offer a complementary tool for PMI estimation, particularly for long-term PMI estimation. Full article
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20 pages, 7473 KiB  
Article
Cerebellar Contributions to Hypokinetic Symptoms in an Acute Lesion Parkinsonism Model
by Cristofer Zarate-Calderon, Gerardo Marín, Iraís Viveros-Martínez, Lizbeth Vásquez-Celaya, Porfirio Carrillo-Castilla, Gonzalo E. Aranda-Abreu, Donaji Chi-Castañeda and Luis I. García
Neurol. Int. 2025, 17(5), 72; https://doi.org/10.3390/neurolint17050072 - 7 May 2025
Viewed by 1269
Abstract
Background: Parkinsonism, characterized by motor symptoms, is typically attributed to basal ganglia dysfunction. Recent evidence suggests that the cerebellum may also influence these symptoms. This study investigated Crus II, the dentate nucleus (DN), and the inferior olive (IO) in a rat model of [...] Read more.
Background: Parkinsonism, characterized by motor symptoms, is typically attributed to basal ganglia dysfunction. Recent evidence suggests that the cerebellum may also influence these symptoms. This study investigated Crus II, the dentate nucleus (DN), and the inferior olive (IO) in a rat model of parkinsonism induced by a bilateral ventrolateral striatal (VLS) lesion. Materials and Methods: Twenty-four male Wistar rats were divided into control (n = 12) and experimental (n = 12) groups. Monopolar electrodes were implanted in target structures. The experimental group received a bilateral VLS lesion. Animals underwent four weekly sessions of electrophysiological recordings and blind behavioral assessments (resting, grooming, locomotion, rearing, sniffing) via video tracking. Power spectral density (PSD) in the 300–500 Hz band was computed. Statistical analyses included Mann–Whitney U, Friedman with Wilcoxon post hoc, and Spearman correlation tests. Results: During weeks one and two, there were significant PSD increases in the experimental group compared to the control, particularly in Crus II—grooming (p = 0.005), locomotion (p = 0.007), and rearing (p = 0.026); in IO—sniffing (p = 0.0167); and in DN—grooming (p < 0.001) and locomotion (p = 0.0008). Additionally, intragroup analysis revealed significant PSD elevations relative to baseline in these structures. Significant correlations were observed only for grooming (negative correlations) and sniffing (positive correlations) across all cerebellar regions. Conclusions: These findings suggest compensatory cerebellar hyperactivity induced by VLS lesion, potentially modulating hypokinetic symptoms and highlighting dynamic network interactions. Interpretation warrants caution due to limitations inherent to the acute lesion model and experimental duration. Full article
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19 pages, 2564 KiB  
Article
Genomic Insights into Plant Growth-Promoting Traits of Lysinibacillus fusiformis and Bacillus cereus from Rice Fields in Panama
by Celestino Aguilar, Rito Herrera, José L. Causadías, Betzaida Bernal, Oris Chavarria, Claudia González, Jessica Gondola, Ambar Moreno and Alexander A. Martínez
Microbiol. Res. 2025, 16(5), 95; https://doi.org/10.3390/microbiolres16050095 - 7 May 2025
Viewed by 1743
Abstract
Soil, rhizosphere, and plant-associated microorganisms can enhance plant growth and health. A genomic analysis of these microbes revealed the key characteristics contributing to their beneficial effects. Following a field survey in Panama, four bacterial isolates with plant growth-promoting traits (PGPT) in rice ( [...] Read more.
Soil, rhizosphere, and plant-associated microorganisms can enhance plant growth and health. A genomic analysis of these microbes revealed the key characteristics contributing to their beneficial effects. Following a field survey in Panama, four bacterial isolates with plant growth-promoting traits (PGPT) in rice (Oryza sativa L.) were identified. In this study, we sequenced, assembled, and annotated the genomes of Lysinibacillus fusiformis C6 and 24, and Bacillus cereus D23 and 59. The C6 genome was 4,754,472 bp long with 10 contigs, 37.62% guanine-cytosine (GC) content, and 4657 coding sequences (CDS). The 24 genome was 4,683,219 bp with five contigs, 37.65% GC content, and 4550 CDS. The D23 genome was 6,199,908 bp long with 18 contigs, 34.84% GC content, and 6141 CDS. The 59 genome was 6,194,462 bp with 21 contigs, 34.87% GC content, and 6122 CDS. Digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) confirmed that C6 and 24 belong to Lysinibacillus fusiformis, whereas D23 and 59 belong to the Bacillus cereus species. Further results revealed that these bacteria contained genes characteristic of plant growth-promoting bacteria, such as siderophore, phytohormone auxin (IAA) production, and nitrogen-fixing abilities that promote plant growth. Moreover, the antiSMASH database identified gene clusters involved in secondary metabolite production (biosynthetic gene clusters), such as betalactone, NRPS-like, NRP-siderophore, terpene, and RiPP-like clusters. Moreover, diverse and novel biosynthetic clusters (BCGs) have included non-ribosomal peptides (NRPs), polyketides (PKs), bacteriocins, and ribosomally synthesized and post-transcriptionally modified peptides (RiPPs). This work offers new insights into the genomic basis of the studied strains’ plant growth-promoting capabilities. Full article
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38 pages, 2567 KiB  
Article
Improving Daily CMIP6 Precipitation in Southern Africa Through Bias Correction—Part 1: Spatiotemporal Characteristics
by Amarech Alebie Addisuu, Gizaw Mengistu Tsidu and Lenyeletse Vincent Basupi
Climate 2025, 13(5), 95; https://doi.org/10.3390/cli13050095 - 4 May 2025
Cited by 1 | Viewed by 1749
Abstract
Impact models used in water, ecology, and agriculture require accurate climatic data to simulate observed impacts. Some of these models emphasize the distribution of precipitation within a month or season rather than the overall amount. To meet this requirement, a study applied three [...] Read more.
Impact models used in water, ecology, and agriculture require accurate climatic data to simulate observed impacts. Some of these models emphasize the distribution of precipitation within a month or season rather than the overall amount. To meet this requirement, a study applied three bias correction techniques—scaled distribution mapping (SDM), quantile distribution mapping (QDM), and QDM with a separate treatment for precipitation below and above the 95th percentile threshold (QDM95)—to daily precipitation data from eleven Coupled Model Intercomparison Project Phase 6 (CMIP6) models, using the Climate Hazards Group Infrared Precipitation with Station version 2 (CHIRPS) as a reference. This study evaluated the performance of all bias-corrected CMIP6 models over Southern Africa from 1982 to 2014 in replicating the spatial and temporal patterns of precipitation across the region against three observational datasets, CHIRPS, the Climatic Research Unit (CRU), and the Global Precipitation Climatology Centre (GPCC), using standard statistical metrics. The results indicate that all bias-corrected precipitation generally performs better than native model precipitation in replicating the observed December–February (DJF) mean and seasonal cycle. The probability density function (PDF) of the bias-corrected regional precipitation indicates that bias correction enhances model performance, particularly for precipitation in the range of 3–35 mm/day. However, both corrected and uncorrected models underestimate higher extremes. The pattern correlations of the bias-corrected precipitation with CHIRPS, the GPCC, and the CRU, as compared to the correlations of native precipitation with the three datasets, have improved from 0.76–0.89 to 0.97–0.99, 0.73–0.87 to 0.94–0.97, and 0.74–0.89 to 0.97–0.99, respectively. Additionally, the Taylor skill scores of the models for replicating the CHIRPS, GPCC, and CRU precipitation spatial patterns over Southern Africa have improved from 0.57–0.80 to 0.79–0.95, 0.55–0.76 to 0.80–0.91, and 0.54–0.75 to 0.81–0.91, respectively. Overall, among the three bias correction techniques, QDM consistently demonstrated better performance than both QDM95 and SDM across various metrics. The implementation of distribution-based bias correction resulted in a significant reduction in bias and improved the spatial consistency between models and observations over the region. Full article
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