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Search Results (269)

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Keywords = C-X···π interactions

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12 pages, 4939 KB  
Article
Synergistic Tuning of Active Sites and π-Conjugation in 2D Conductive MOFs Boosts Uric Acid Electrosensing
by Yanli Liu, Yifan Fu, Haitong Zhang, Lingyu Wang, Xuejing Lin and Jingjuan Liu
Chemosensors 2025, 13(9), 318; https://doi.org/10.3390/chemosensors13090318 - 25 Aug 2025
Abstract
Uric acid (UA) detection is critical for human health monitoring, necessitating the development of electrochemical sensing electrodes suitable for physiological environments. This study evaluated four 2D conductive metal–organic frameworks (2D c-MOFs), namely Cu-HHTP, Ni-HHTP, Cu-HAB, and Ni-HAB, which share identical graphene-like 2D [...] Read more.
Uric acid (UA) detection is critical for human health monitoring, necessitating the development of electrochemical sensing electrodes suitable for physiological environments. This study evaluated four 2D conductive metal–organic frameworks (2D c-MOFs), namely Cu-HHTP, Ni-HHTP, Cu-HAB, and Ni-HAB, which share identical graphene-like 2D sheet structures but differ in π-conjugation extent and catalytic active centers [MX4] (M = Cu or Ni; X = O or NH) as electrosensing electrodes. Electrochemical sensing performance was compared by detecting UA in phosphate-buffered saline (PBS). Herein, the Ni-HHTP electrode demonstrated superior sensitivity (6.79 μA·μM−1·cm−2), the lowest oxidation potential (0.272 V), and the lowest detection limit (0.44 μM). Langmuir adsorption isotherm analysis revealed that the Ni-HHTP electrode possesses the highest surface coverage (ΓA) (5061.16 pmol cm−2) and the most favorable Gibbs adsorption free energy (ΔG°) (−18.775 kJ mol−1), indicating its strongest UA adsorption capacity and molecular interaction. This enhanced performance is attributed to the optimal synergy between [NiO4] catalytic centers and extended ligand π-conjugation, facilitating greater analyte adsorption and electron transfer efficiency. This work establishes clear structure–performance relationships for 2D c-MOF electrodes in UA detection, providing key insights for designing advanced electrosensing materials. Full article
(This article belongs to the Special Issue New Electrodes Materials for Electroanalytical Applications)
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16 pages, 4846 KB  
Article
A Neodymium(III)-Based Hydrogen-Bonded Bilayer Framework with Dual Functions: Selective Ion Sensing and High Proton Conduction
by Jie Liu, Xin-Yu Guo, Wen-Duo Zhu, Nan Zheng and Jiu-Fu Lu
Molecules 2025, 30(17), 3455; https://doi.org/10.3390/molecules30173455 - 22 Aug 2025
Viewed by 163
Abstract
Lanthanide hydrogen-bonded organic frameworks (Ln-HOFs) integrating luminescent and proton-conductive properties hold significant promise for multifunctional sensing and energy applications, yet their development remains challenging due to the difficulty of balancing structural stability and functional diversity. In this context, this study successfully synthesized a [...] Read more.
Lanthanide hydrogen-bonded organic frameworks (Ln-HOFs) integrating luminescent and proton-conductive properties hold significant promise for multifunctional sensing and energy applications, yet their development remains challenging due to the difficulty of balancing structural stability and functional diversity. In this context, this study successfully synthesized a novel neodymium(III)-based hydrogen-bonded framework material, formulated as {Nd(H2O)3(4-CPCA)[H(4-CPCA)]∙H2O}ₙ (SNUT-15), via hydrothermal assembly using 1-(4-carboxyphenyl)-4-oxo-1,4-dihydropyridazine-3-carboxylic acid (H2(4-CPCA)) as the ligand. Single-crystal X-ray diffraction analysis revealed a rare two-dimensional hydrogen-bonded bilayer structure stabilized by π-π stacking interactions and intermolecular hydrogen bonds. Hirshfeld surface analysis further corroborated the structural characteristics of this material. Moreover, leveraging the superior luminescent properties of lanthanide elements, this crystalline material exhibits dual functionality: selective fluorescence quenching toward Fe3+, La3+, and Mn2+ (with detection limits of 1.74 × 10−4, 1.88 × 10−4, and 3.57 × 10−4 mol·L−1, respectively), as well as excellent proton conductivity reaching 7.92 × 10−3 S cm−1 under conditions of 98% relative humidity and 353 K (80 °C). As a multifunctional neodymium(III)-based HOF material, SNUT-15 demonstrates its potential for applications in environmental monitoring and solid-state electrolytes, providing valuable insights into the rational design of lanthanide-containing frameworks. Full article
(This article belongs to the Section Molecular Structure)
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14 pages, 3458 KB  
Article
Synthesis and Characterization of [Co(tta)2(4,4′-bipy)2.CHCl3]n: A Coordination Polymer with Sulfur–Sulfur Interactions
by Mohammed A. Al-Anber, Deeb Taher, Petra Ecorchard, Matous Kloda, Yasser Mahmoud Aboelmagd and Heinrich Lang
Crystals 2025, 15(8), 729; https://doi.org/10.3390/cryst15080729 - 16 Aug 2025
Viewed by 348
Abstract
Coordination polymer [{Co(tta)2(4,4′-bipy)}n] (1) (tta = 4,4,4 trifluoro-1-(2-thienyl)-1,3-butanedionate; 4,4′-bipy = 4,4′-bipyridine) was synthesized by reacting [Co(tta)2-(H2O)2] with equivalent of 4,4′-bipy, whereby the aqua ligands in [Co(tta)2-(H2O)2 [...] Read more.
Coordination polymer [{Co(tta)2(4,4′-bipy)}n] (1) (tta = 4,4,4 trifluoro-1-(2-thienyl)-1,3-butanedionate; 4,4′-bipy = 4,4′-bipyridine) was synthesized by reacting [Co(tta)2-(H2O)2] with equivalent of 4,4′-bipy, whereby the aqua ligands in [Co(tta)2-(H2O)2] were replaced by 4,4′-bipy ligand. Thermal behavior, investigated via thermogravimetric analysis (TGA), revealed that 1 decomposes between 290 and 400 °C. The solid-state structure of 1 was confirmed by single-crystal X-ray diffraction, which established its polymeric nature of 1. Each monomer unit of 1 features a cobalt center in an octahedral coordination environment, with two equatorially chelating tta ligands and one axially oriented 4,4′-bipy ligand. Sulfur–sulfur interactions lead to the formation of a two-dimensional supramolecular network. In addition, compound 1 is stabilized by various intermolecular interactions, including C-H···π, C-F···F-C, and C-H···F-C contacts. Hirshfeld surface analysis and 2D-fingerprint plots were employed to further investigate the non-covalent intermolecular interactions in the solid state, providing strong evidence for their role in stabilizing the crystal structure. Full article
(This article belongs to the Section Inorganic Crystalline Materials)
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14 pages, 1605 KB  
Article
Supramolecular Switching by Substituent Tuning: A Crystal Engineering Study of 2-Amino- and 2,3-Diamino-5-Halogenopyridines
by Irina S. Konovalova and Guido J. Reiss
Crystals 2025, 15(8), 700; https://doi.org/10.3390/cryst15080700 - 31 Jul 2025
Viewed by 404
Abstract
The crystal structures of the 2-amino-5-halogenopyridines (halogen = Cl (1), Br (2)) and 2,3-diamino-5-halogenopyridines (halogen = Cl (3), Br (4)) were compared with respect to their intermolecular interactions. An ab-initio-based method for evaluating the interaction [...] Read more.
The crystal structures of the 2-amino-5-halogenopyridines (halogen = Cl (1), Br (2)) and 2,3-diamino-5-halogenopyridines (halogen = Cl (3), Br (4)) were compared with respect to their intermolecular interactions. An ab-initio-based method for evaluating the interaction energies between molecules was employed to estimate the driving forces of crystal formation. As a result, regularities in crystal structure organization were identified. For compounds 1 and 2, a dimeric building unit is formed by two N–H…Npyr hydrogen bonds. These dimers are further connected to neighboring units by C–H…π, C–H…N, N…X (X = Cl, Br), and non-specific interactions. The aforementioned intermolecular interactions give rise to layered structures that are similar but not isotypical. No significant contributions from π–π or N–H…N(H2) interactions are observed in 1 and 2. The structures of 3 and 4 are isotypical and crystallize in the non-centrosymmetric space group P212121. The most important intermolecular interactions are N–H…Npyr, N–H…N(H2), and stacking interactions. These interactions lead to identical columnar-layered structures in both 3 and 4. No significant contributions from halogen bonds of the type N…X (X = Cl, Br) are found in 3 and 4. Full article
(This article belongs to the Special Issue Analysis of Halogen and Other σ-Hole Bonds in Crystals (2nd Edition))
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16 pages, 4479 KB  
Article
Photophysical Properties of 1,3-Diphenylisobenzofuran as a Sensitizer and Its Reaction with O2
by Ștefan Stan, João P. Prates Ramalho, Alexandru Holca and Vasile Chiș
Molecules 2025, 30(14), 3021; https://doi.org/10.3390/molecules30143021 - 18 Jul 2025
Viewed by 502
Abstract
1,3-Diphenylisobenzofuran (DPBF) is a widely used fluorescent probe for singlet oxygen (1O2) detection in photodynamic applications. In this work, we present an integrated experimental and computational analysis to describe its spectroscopic, photophysical, and reactive properties in ethanol, DMSO, and [...] Read more.
1,3-Diphenylisobenzofuran (DPBF) is a widely used fluorescent probe for singlet oxygen (1O2) detection in photodynamic applications. In this work, we present an integrated experimental and computational analysis to describe its spectroscopic, photophysical, and reactive properties in ethanol, DMSO, and DMF. UV-Vis and fluorescence measurements across a wide concentration range show well-resolved S0 → S1 electronic transition of a π → π* nature with small red shifts in polar aprotic solvents. Fluorescence lifetimes increase slightly with solvent polarity, showing stabilization of the excited state. The 2D PES and Boltzmann populations analysis indicate two co-existing conformers (Cs and C2), with Cs being slightly more stable at room temperature. TD-DFT calculations have been performed using several density functionals and the 6-311+G(2d,p) basis set to calculate absorption/emission wavelengths, oscillator strengths, transition dipole moments, and radiative lifetimes. Overall, cam-B3LYP and ωB97X-D provided the best agreement with experiments for the photophysical data across all solvents. The photophysical behavior of DPBF upon interaction with 1O2 can be explained by a small-barrier, two-step reaction pathway that goes through a zwitterionic intermediate, resulting in the formation of 2,5-endoperoxide. This work explains the photophysical properties and reactivity of DPBF, therefore providing a solid basis for future studies involving singlet oxygen. Full article
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21 pages, 4054 KB  
Article
Benzo[c]cinnolinium Trifluoromethanesulfonate Architectures Induced by Organotin(IV) Complexes
by Hélène Cattey and Laurent Plasseraud
Crystals 2025, 15(7), 655; https://doi.org/10.3390/cryst15070655 - 17 Jul 2025
Viewed by 415
Abstract
Four novel crystalline architectures based on benzo[c]cinnolininium trifluoromethanesulonate salts, [C12H9N2]+[CF3SO3], have been isolated as single-crystals, and their structures have been determined by X-ray diffraction analysis. The formation [...] Read more.
Four novel crystalline architectures based on benzo[c]cinnolininium trifluoromethanesulonate salts, [C12H9N2]+[CF3SO3], have been isolated as single-crystals, and their structures have been determined by X-ray diffraction analysis. The formation of the new salts results from reactions involving the dimeric hydroxo di-n-butylstannane trifluoromethanesulfonato complex [n-Bu2Sn(OH)(H2O)(CF3SO3)]2 (1) and benzo[c]cinnoline (C12H8N2, BCC). Organic salts I, II, III, and IV were crystallized through slow evaporation at room temperature from a mixture of toluene/dichloromethane. The cystallographic structures of I, II, and IV exhibit the presence of monoprotonated benzo[c]cinnolinium cations in interactions with a free benzo[c]cinnoline molecule through N–H···N hydrogen bonding, while for salt III, the monoprotonated cation directly interacts with the CF3SO3 anion via an N–H···O interaction. For all four salts, aromatic π-π interactions involving rings of various components (free benzo[c]cinnoline molecule, benzo[c]cinnolinium cation, toluene molecule), combined with weak C–H···O and C–H···F interactions implying the trifluoromethanesulfonate anion, promote the solid-state self-assembly of supramolecular stacks. In parallel to the formation of benzo[c]cinnolinium based-salts, organotin(IV) 1 was converted into a distannoxane compound, 2{[n-Bu2(μ-OH)SnOSn(μ-η2-O3SCF3)n-Bu2]2[n-Bu2(η1-O3SCF3)SnOSn(μ-OH)n-Bu2]2} (3), which was also isolated as a single crystal and whose crystallographic structure was previously established by us. Full article
(This article belongs to the Section Macromolecular Crystals)
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28 pages, 4548 KB  
Article
New Tools in Heavy Metal Detection: Synthesis, Spectroscopic, and Quantum Chemical Characterization of Selected Water-Soluble Styryl Derivatives of Quinoline and 1,10-Phenanthroline
by Jacek E. Nycz, Jolanta Kolińska, Nataliya Karaush-Karmazin, Tieqiao Chen, Maria Książek and Joachim Kusz
Molecules 2025, 30(12), 2659; https://doi.org/10.3390/molecules30122659 - 19 Jun 2025
Viewed by 747
Abstract
A series of water-soluble molecules based on 8-isopropyl-2-methyl-5-nitroquinoline and 1,10-phenanthroline core were designed by introducing a π-conjugated bridge, vinyl unit –CH=CH–. We present the selective conversion of methyl groups located on the C2 and C9 positions in the constitution of selected quinoline or [...] Read more.
A series of water-soluble molecules based on 8-isopropyl-2-methyl-5-nitroquinoline and 1,10-phenanthroline core were designed by introducing a π-conjugated bridge, vinyl unit –CH=CH–. We present the selective conversion of methyl groups located on the C2 and C9 positions in the constitution of selected quinoline or 1,10-phenanthroline derivatives, respectively, into vinyl (or styryl) products by applying Perkin condensation. The two groups of ligands differ in the presence of one or two arms. The structure of the molecule ((1E,1′E)-(1,10-phenanthroline-2,9-diyl)bis(ethene-2,1-diyl))bis(benzene-4,1,3-triyl) tetraacetate was determined by single-crystal X-ray diffraction measurements. The X-ray, NMR, and DFT computational studies indicate the influence of rotation (rotamers) on the physical properties of studied styryl molecules. The results show that the styryl molecules with the vinyl unit –CH=CH– exhibit significant static and dynamic hyperpolarizabilities. Quantum chemical calculations using density functional theory and B3LYP/6-311++G(d,p) with Grimme’s dispersion correction approach predict the existence and relative stability of different spatial cis(Z)- and trans(E)-conformers of styryl derivatives of quinoline and 1,10-phenanthroline, which exhibit different electronic distribution and conjugation within the molecular skeleton, dipole moments, and steric interactions, leading to variations in their photophysical behavior and various applications. Our studies indicate that the rotation and isomerization of aryl groups can significantly influence the electronic and optical properties of π-conjugated systems, such as vinyl units (–CH=CH–). The rotation of aryl groups around the single bond that connects them to the vinyl unit can lead to changes in the effective π-conjugation between the aryl group and the rest of the π-conjugated system. The rotation and isomerization of aryl groups in π-conjugated systems significantly impact their electronic and optical properties. These changes can modify the efficiency of π-conjugation, affecting charge transfer processes, absorption properties, light emission, and electrical conductivity. In designing optoelectronic materials, such as organic dyes, organic semiconductors, or electrochromic materials, controlling the rotation and isomerization of aryl groups can be crucial for optimizing their functionality. Full article
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6 pages, 686 KB  
Communication
A Neutral Heteroleptic Cu(I) Complex with Diimine and Diphosphine Ligands
by Xiaojuan Sun, Ruilong Sheng, Marijana Petkovic, Jolanta Jaśkowska and Zhiqiang Wang
Molbank 2025, 2025(2), M2019; https://doi.org/10.3390/M2019 - 6 Jun 2025
Viewed by 798
Abstract
Developing organic luminescent materials with the advantages of low cost, high thermal stability, and strong emission performance is incredibly desirable. In this work, we synthesized a new neutral heteroleptic Cu(I) complex characterized by single-crystal X-ray diffraction, FT-IR, NMR, and MALDI-TOF-MS. The neutral heteroleptic [...] Read more.
Developing organic luminescent materials with the advantages of low cost, high thermal stability, and strong emission performance is incredibly desirable. In this work, we synthesized a new neutral heteroleptic Cu(I) complex characterized by single-crystal X-ray diffraction, FT-IR, NMR, and MALDI-TOF-MS. The neutral heteroleptic Cu(I) complex has a typical distorted tetrahedral configuration, and the complex molecules are connected into 1D chains via C-H···π interactions in crystal. Full article
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18 pages, 6292 KB  
Article
A N, S-Containing Graphene Oxide Composite for the Adsorptive Removal of p-Nitrophenol from Aqueous Solutions
by Bi Yang, Tao-Tao Shi, Wei-Guo Hu, Guan-Jin Gao, Yi-Ping Liu and Jin-Gang Yu
Molecules 2025, 30(9), 2046; https://doi.org/10.3390/molecules30092046 - 4 May 2025
Cited by 1 | Viewed by 566
Abstract
A novel 3-amino-5-mercapto-1,2,4-triazole functionalized graphene oxide composite (GO-ATT) was successfully prepared via a covalent coupling method, then employed for the removal of p-nitrophenol (PNP) from wastewater. The morphology as well as the composition of GO-ATT composite were investigated using Fourier transform infrared spectroscopy [...] Read more.
A novel 3-amino-5-mercapto-1,2,4-triazole functionalized graphene oxide composite (GO-ATT) was successfully prepared via a covalent coupling method, then employed for the removal of p-nitrophenol (PNP) from wastewater. The morphology as well as the composition of GO-ATT composite were investigated using Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), thermogravimetric analysis (TGA), X-ray diffraction spectroscopy (XRD), and X-ray photoelectron spectroscopy (XPS). The surface charge of GO-ATT composite was evaluated by Zeta potential analyses. The surface area and pore size distribution of GO-ATT composite were analyzed using specific surface analyses using the Brunauer–Emmett–Teller (BET) method. Batch adsorption experiments were performed to investigate the effects of conditional factors, including contact time, solution pH, initial PNP concentration, and contact temperature, on the adsorption process. A maximum adsorption capacity of PNP by GO-ATT composite (0.287 mmol g−1) could be obtained at 25 °C. Freundlich isotherm (R2 > 0.92505) can better describe the adsorption behavior of PNP on GO-ATT composite. The thermodynamic functions (ΔG°, ΔH°, ΔS°) indicate that adsorption is a spontaneous, endothermic, entropy-increasing process and features physisorption. The adsorption behavior of PNP on GO-ATT composite conformed to the nonlinear pseudo-second-order kinetic model. Adsorption mechanism investigation indicated that the electrostatic, π-π stacking, and hydrogen bonding interactions were involved in the adsorption process. After 10 adsorption–desorption cycles, the adsorbent exhibited a stable and efficient removal rate (94%) for PNP. Due to its advantages of a high efficiency, excellent reusability, and high stability, the covalently coupled GO-ATT composite might be used as an effective adsorbent for the removal of phenolic contaminants from wastewater. Full article
(This article belongs to the Special Issue Design and Application Based on Versatile Nano-Composites)
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19 pages, 7995 KB  
Article
Insights into the Factors Controlling the Origin of Activation Barriers in the [2 + 2] Cycloaddition Reactions of Heavy Imine-like Molecules Featuring a Ge=Group 15 Double Bond with Heterocumulenes
by Zheng-Feng Zhang and Ming-Der Su
Molecules 2025, 30(9), 1905; https://doi.org/10.3390/molecules30091905 - 25 Apr 2025
Viewed by 550
Abstract
The [2 + 2] cycloaddition reactions of the heterocumulene (N=C=N) with the heavy imine-like molecule Ge=G15-Rea (G15 = Group 15 element) were examined using density functional theory (M06-2X-D3/def2-TZVP). The theoretical findings indicate that the doubly bonded Ge=G15 moiety in Ge=G15-Rea (L [...] Read more.
The [2 + 2] cycloaddition reactions of the heterocumulene (N=C=N) with the heavy imine-like molecule Ge=G15-Rea (G15 = Group 15 element) were examined using density functional theory (M06-2X-D3/def2-TZVP). The theoretical findings indicate that the doubly bonded Ge=G15 moiety in Ge=G15-Rea (L1L2Ge=G15L3) is characterized by electron-sharing bonding between the triplet L1L2Ge and triplet G15–L3 fragments. All five Ge=G15-based heavy imine analogues readily undergo [2 + 2] cycloaddition reactions with N=C=N. Energy decomposition analysis (EDA–NOCV) suggests that the [2 + 2] cycloaddition reaction between Ge=G15-Rea and N=C=N involves a donor–acceptor (singlet–singlet) interaction instead of an electron-sharing (triplet–triplet) interaction. Frontier molecular orbital (FMO) theory and the energy decomposition analysis–natural orbitals for chemical valence (EDA–NOCV) findings emphasize that the key bonding interaction involves the occupied p-π orbital of Ge=G15-Rea and the vacant p-π* orbital of C=N=C. Based on the activation strain model results, the activation barrier of the [2 + 2] cycloaddition reaction is predominantly controlled by the deformation energies of Ge=G15-Rea and N=C=N. Full article
(This article belongs to the Special Issue Inorganic Chemistry in Asia)
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19 pages, 7720 KB  
Article
A Novel Fe(III)-Complex with 1,10-Phenanthroline and Succinate Ligands: Structure, Intermolecular Interactions, and Spectroscopic and Thermal Properties for Engineering Applications
by Danilo Gualberto Zavarize, João G. de Oliveira Neto, Kamila Rodrigues Abreu, Alejandro Pedro Ayala, Francisco Ferreira de Sousa and Adenilson Oliveira dos Santos
Processes 2025, 13(5), 1267; https://doi.org/10.3390/pr13051267 - 22 Apr 2025
Viewed by 880
Abstract
A new complex, tetrakis(1,10-phenanthroline)-bis(succinate)-(µ₂-oxo)-bis(iron(III)) nonahydrate, [Fe2(Phen)4(Succinate)2(μ-O)](H2O)9, was synthesized using the slow evaporation method. This study provides a comprehensive characterization of this coordination compound, focusing on its structural, spectroscopic, and thermal properties, which are [...] Read more.
A new complex, tetrakis(1,10-phenanthroline)-bis(succinate)-(µ₂-oxo)-bis(iron(III)) nonahydrate, [Fe2(Phen)4(Succinate)2(μ-O)](H2O)9, was synthesized using the slow evaporation method. This study provides a comprehensive characterization of this coordination compound, focusing on its structural, spectroscopic, and thermal properties, which are relevant for applications in catalysis, material science, and chemical engineering processes. Single-crystal X-ray diffraction (XRD), Raman spectroscopy, Fourier-transform infrared (FT-IR), ultraviolet-visible (UV-Vis) spectroscopy, and thermoanalytical analyses were employed to investigate the material properties. Intermolecular interactions were further explored through Hirshfeld surface analysis. XRD results revealed a monoclinic crystal system with the C2/c space group, lattice parameters: a = 12.7772(10) Å, b = 23.0786(15) Å, c = 18.9982(13) Å, β = 93.047(2)°, V = 5594.27(7) Å3, and four formulas per unit cell (Z = 4). The crystal packing is stabilized by C–H⋯O, C–O⋯H, C–H⋯π, and π⋯π intermolecular interactions, as confirmed by vibrational spectroscopy. The heteroleptic coordination environment, combining weak- and strong-field ligands, results in a low-spin state with an estimated crystal field stabilization energy of −4.73 eV. Electronic properties indicate direct allowed transitions (γ = 2) with a maximum optical band gap of 2.66 eV, suggesting potential applications in optoelectronics and photochemical processes. Thermal analysis demonstrated good stability within the 25–136 °C range, with three main stages of thermal decomposition, highlighting its potential for use in high-temperature processes. These findings contribute to the understanding of Fe(III)-based complexes and their prospects in advanced material design, catalytic systems, and process optimization. Full article
(This article belongs to the Special Issue Transport and Energy Conversion at the Nanoscale and Molecular Scale)
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18 pages, 7058 KB  
Article
Molecular Structure and GPR35 Receptor Docking of 1,3-Phenylene Bis-Oxalamide Derivatives
by Juan Saulo González-González, José Martín Santiago-Quintana, José Luis Madrigal-Angulo, Lina Barragán-Mendoza, Nancy E. Magaña-Vergara, Efrén V. García-Báez, Itzia Irene Padilla-Martínez and Francisco Javier Martínez-Martínez
Crystals 2025, 15(4), 371; https://doi.org/10.3390/cryst15040371 - 17 Apr 2025
Viewed by 581
Abstract
A series of three 1,3-phenylene bis-oxamides 3ac, structurally related to the GPR35 receptor-agonist drug lodoxamide, has been synthesized by reacting the 1,3-phenylene bis-oxalamates 2a and 2b with amines. The obtained compounds were characterized by 1H and 13C NMR, [...] Read more.
A series of three 1,3-phenylene bis-oxamides 3ac, structurally related to the GPR35 receptor-agonist drug lodoxamide, has been synthesized by reacting the 1,3-phenylene bis-oxalamates 2a and 2b with amines. The obtained compounds were characterized by 1H and 13C NMR, and IR spectroscopy, they showed characteristic signals for the aromatic, N―H, and C=O groups. Molecular structure was determined using single-crystal X-ray diffraction. The supramolecular architecture is driven by N―H···O=C, N―H···N, C—H···π, and O=C···O=C interactions depicting a supramolecular helix (3a) and tapes (3bc). Intermolecular interactions were studied using Hirshfeld surface analysis, where N―H∙∙∙X (X = N, O) hydrogen bonding represents 30.2% to the surface of 3a and 17.8–18.8% to the surface of 3bc. The most energetic interactions involve the amide N—H∙∙∙O hydrogen bonding, contributing in the −113.9 to −97.0 kJ mol−1 range to the crystal energy, being more dispersive than electrostatic in nature. The molecular docking study was performed to evaluate the binding ability of 3ac compounds to the GPR35 receptor, showing a favorable binding in a similar way to lodoxamide. Full article
(This article belongs to the Section Biomolecular Crystals)
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20 pages, 6163 KB  
Article
Copper Methacrylate Complexes with Benzimidazole Derivatives: Structural Characterization and Antimicrobial Assays
by Andra-Georgeta Andrei, Rodica Olar, Cătălin Maxim, Gina Vasile Scăețeanu, Ioana-Cristina Marinas, Madalina-Diana Gaboreanu and Mihaela Badea
Inorganics 2025, 13(4), 109; https://doi.org/10.3390/inorganics13040109 - 1 Apr 2025
Cited by 1 | Viewed by 733
Abstract
In order to design antimicrobial species, a series of methacrylate (Macr) complexes, [Cu(HBzIm)2(Macr)2] (1), [Cu2(HBzIm)2(Macr)4] (2), [Cu(2-MeBzIm)2(Macr)2] (3), [Cu2(2-MeBzIm)2(Macr) [...] Read more.
In order to design antimicrobial species, a series of methacrylate (Macr) complexes, [Cu(HBzIm)2(Macr)2] (1), [Cu2(HBzIm)2(Macr)4] (2), [Cu(2-MeBzIm)2(Macr)2] (3), [Cu2(2-MeBzIm)2(Macr)4] (4), and [Cu(5,6-Me2BzIm)2(Macr)2] (5) (HBzIm = benzimidazole, 2-MeBzIm = 2-methylbenzimidazole, and 5,6-Me2BzIm = 5,6-dimethylbenzimidazole) were synthesized and characterized by several spectral techniques, as well as by single crystal X-ray diffraction. The mononuclear species exhibit a distorted octahedral stereochemistry, while the binuclear types, with a paddle-wheel structure, adopt a square pyramidal surrounding. The methacrylate acts either as a chelate or a bridge, while all benzimidazole derivatives are coordinated as unidentate. The supramolecular networks are developed by both intermolecular π–π stacking interactions and hydrogen bonds. The antimicrobial assays provided both complexes the ability to inhibit planktonic strain proliferation, as well as to adhere on inert substratum. All complexes exhibit a moderate antimicrobial activity, both in regards to standard and clinical isolate strains, the most active being compound 5 against Candida albicans, with a minimum inhibitory concentration (MIC) of 0.156 mg/mL. It is worth mentioning that complex 1 inhibited the microbial adhesion of the clinical Escherichia coli strain and complex 2 constrained that of the clinical C. albicans strain. Full article
(This article belongs to the Special Issue Metal Complexes with N-donor Ligands, 2nd Edition)
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29 pages, 11063 KB  
Article
Supramolecular Assemblies and Anticancer Activities of Aminopyidine-Based Polynuclear and Mononuclear Co(II) Benzoates: Experimental and Theoretical Studies
by Kamal K. Dutta, Trishnajyoti Baishya, Rosa M. Gomila, Antonio Frontera, Miquel Barcelo-Oliver, Akalesh Kumar Verma, Jumi Das and Manjit K. Bhattacharyya
Inorganics 2025, 13(2), 51; https://doi.org/10.3390/inorganics13020051 - 10 Feb 2025
Viewed by 869
Abstract
Two new Co(II) coordination compounds viz. [Co(H2O)(bz)2(μ-3-Ampy)2]n (1) and [Co(4-Mebz)2(2-Ampy)2] (2) (wherebz = benzoate, 4-Mebz = 4-Methylbenzoate and Ampy = Aminopyridine) were synthesized and characterized via elemental (CHN), [...] Read more.
Two new Co(II) coordination compounds viz. [Co(H2O)(bz)2(μ-3-Ampy)2]n (1) and [Co(4-Mebz)2(2-Ampy)2] (2) (wherebz = benzoate, 4-Mebz = 4-Methylbenzoate and Ampy = Aminopyridine) were synthesized and characterized via elemental (CHN), electronic spectroscopy, FT-IR spectroscopy, and thermogravimetric analysis (TGA). The molecular structures were determined by single-crystal X-ray diffraction analysis, inferring that compound 1 crystallizes as a 3-Ampy bridged Co(II) coordination polymer, whereas compound 2 crystallizes as a mononuclear Co(II) compound. Compound 1 unfolds the presence of N–H⋯O, C–H⋯O, O–H⋯O, C–H⋯N and aromatic π⋯π interactions, while for compound 2, N–H⋯O, C–H⋯O, C–H⋯C and C–H⋯π interactions are observed. Both the compounds showcase scarcely reported chelate ring interactions involving the benzoate moiety (chelate ring⋯π in 1 and N–H⋯chelate ring in 2). We also conducted theoretical evaluations comprising of combined QTAIM/NCI plot analysis, DFT energy calculation and MEP surface analysis to analyze the supramolecular interactions present in the crystal structures. As per QTAIM parameters, the predominance of π-stacking interactions over hydrogen bonds in stabilizing the assembly in compound 1 is affirmed. Likewise, in compound 2, both hydrogen bonding (HBs) and C–H⋯π interactions are deemed pivotal in stabilizing the dimeric assemblies. The in vitro antiproliferative activities of compounds 1 and 2 were performed against Dalton’s lymphoma (DL) cancer cell lines through cytotoxicity and apoptosis assays, showcasing higher cytotoxicity of compound 1 (IC50 = 28 μM) over compound 2 (IC50 = 34 μM). Additionally, a molecular docking study investigated the structure–activity relationship of these compounds and allowed an understanding of the molecular behaviour after treatment. Full article
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Article
«Green-Ligand» in Metallodrugs Design—Cu(II) Complex with Phytic Acid: Synthetic Approach, EPR-Spectroscopy, and Antimycobacterial Activity
by Kseniya A. Koshenskova, Natalia V. Makarenko, Fedor M. Dolgushin, Dmitriy S. Yambulatov, Olga B. Bekker, Matvey V. Fedin, Sergei A. Dementev, Olesya A. Krumkacheva, Igor L. Eremenko and Irina A. Lutsenko
Molecules 2025, 30(2), 313; https://doi.org/10.3390/molecules30020313 - 15 Jan 2025
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Abstract
The interaction of sodium phytate hydrate C6H18O24P6·xNa·yH2O (phytNa) with Cu(OAc)2·H2O and 1,10-phenanthroline (phen) led to the anionic tetranuclear complex [Cu4(H2O)4(phen)4(phyt)]·2Na+ [...] Read more.
The interaction of sodium phytate hydrate C6H18O24P6·xNa·yH2O (phytNa) with Cu(OAc)2·H2O and 1,10-phenanthroline (phen) led to the anionic tetranuclear complex [Cu4(H2O)4(phen)4(phyt)]·2Na+·2NH4+·32H2O (1), the structure of the latter was determined by X-ray diffraction analysis. The phytate 1 is completely deprotonated; six phosphate fragments (with atoms P1–P6) are characterized by different spatial arrangements relative to the cyclohexane ring (1a5e conformation), which determines two different types of coordination to the complexing agents—P1 and P3, P4, and P6 have monodentate, while P2 and P5 are bidentately bound to Cu2+ cations. The molecular structure of the anion complex is stabilized by a set of strong intramolecular hydrogen bonds involving coordinated water molecules. Aromatic systems of phen ligands chelating copper ions participate in strong intramolecular and intermolecular π-π interactions, further contributing to their association. At the supramolecular level, endless stacks are formed, in the voids of which sodium and ammonium cations and water molecules are present. The stability of 1 in the presence of human serum albumin (HSA) was investigated using Electron Paramagnetic Resonance (EPR) spectroscopy. Continuous wave (CW) EPR spectra in water/glycerol frozen solution clearly indicate a presence of an exchange-coupled Cu(II)-Cu(II) dimeric unit, as well as a Cu(II) monomer-like signal arising from spins sufficiently distant from each other, with comparable contributions of two types of signals. In the presence of albumin at a 1:1 ratio (1 to albumin), the EPR spectrum changes significantly, primarily due to the reduced contribution of the S = 1 fraction showing dipole–dipole splitting. The biological activity of 1 in vitro against the non-pathogenic (model for Mycobacterium tuberculosis) strain of Mycolicibacterium smegmatis is comparable to the first-line drug for tuberculosis treatment, rifampicin. Full article
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