Announcements

9 September 2022
Proteomes | Top 20 Cited Papers in 2021

1. “Proteome Discoverer—A Community Enhanced Data Processing Suite for Protein Informatics”
by Benjamin C. Orsburn
Proteomes 2021, 9(1), 15; https://doi.org/10.3390/proteomes9010015
Available online: https://www.mdpi.com/2227-7382/9/1/15

2. “The Dystrophin Node as Integrator of Cytoskeletal Organization, Lateral Force Transmission, Fiber Stability and Cellular Signaling in Skeletal Muscle”
by Paul Dowling, Stephen Gargan, Sandra Murphy, Margit Zweyer, Hemmen Sabir, Dieter Swandulla and Kay Ohlendieck
Proteomes 2021, 9(1), 9; https://doi.org/10.3390/proteomes9010009
Available online: https://www.mdpi.com/2227-7382/9/1/9

3. “Proteomes Are of Proteoforms: Embracing the Complexity”
by Katrina Carbonara, Martin Andonovski and Jens R. Coorssen
Proteomes 2021, 9(3), 38; https://doi.org/10.3390/proteomes9030038
Available online: https://www.mdpi.com/2227-7382/9/3/38

4. “Exosome-Derived Mediators as Potential Biomarkers for Cardiovascular Diseases: A Network Approach”
by Liliana Moreira-Costa, António S. Barros, André P. Lourenço, Adelino F. Leite-Moreira, Rita Nogueira-Ferreira, Visith Thongboonkerd and Rui Vitorino
Proteomes 2021, 9(1), 8; https://doi.org/10.3390/proteomes9010008
Available online: https://www.mdpi.com/2227-7382/9/1/8

5. “Regenerative Potential of Enamel Matrix Protein Derivative and Acellular Dermal Matrix for Gingival Recession: A Systematic Review and Meta-Analysis”
by Muhammad Saad Shaikh, Mohid Abrar Lone, Hesham Matabdin, Muneeb Ahmed Lone, Azeem Hussain Soomro and Muhammad Sohail Zafar
Proteomes 2021, 9(1), 11; https://doi.org/10.3390/proteomes9010011
Available online: https://www.mdpi.com/2227-7382/9/1/11

6. “Targeted Quantification of the Lysosomal Proteome in Complex Samples”
by Peter Mosen, Anne Sanner, Jasjot Singh and Dominic Winter
Proteomes 2021, 9(1), 4; https://doi.org/10.3390/proteomes9010004
Available online: https://www.mdpi.com/2227-7382/9/1/4

7. “In-Depth Analysis of the Plasma Proteome in ME/CFS Exposes Disrupted Ephrin-Eph and Immune System Signaling”
by Arnaud Germain, Susan M. Levine and Maureen R. Hanson
Proteomes 2021, 9(1), 6; https://doi.org/10.3390/proteomes9010006
Available online: https://www.mdpi.com/2227-7382/9/1/6

8. “Applied Proteomics in ‘One Health’”
by Eleni I. Katsarou, Charalambos Billinis, Dimitrios Galamatis, George C. Fthenakis, George Th. Tsangaris and Angeliki I. Katsafadou
Proteomes 2021, 9(3), 31; https://doi.org/10.3390/proteomes9030031
Available online: https://www.mdpi.com/2227-7382/9/3/31

9. “Secretome Analysis of Clavibacter nebraskensis Strains Treated with Natural Xylem Sap In Vitro Predicts Involvement of Glycosyl Hydrolases and Proteases in Bacterial Aggressiveness”
by Atta Soliman, Christof Rampitsch, James T. Tambong and Fouad Daayf
Proteomes 2021, 9(1), 1; https://doi.org/10.3390/proteomes9010001
Available online: https://www.mdpi.com/2227-7382/9/1/1

10. “Proteomics Landscape of Alzheimer’s Disease”
by Ankit P. Jain and Gajanan Sathe
Proteomes 2021, 9(1), 13; https://doi.org/10.3390/proteomes9010013
Available online: https://www.mdpi.com/2227-7382/9/2/22

11. “Comparison of Sample Preparation Methods for Shotgun Proteomic Studies in Aquaculture Species”
by Mário Jorge Araújo, Maria Lígia Sousa, Aldo Barreiro Felpeto, Maria V. Turkina, Elza Fonseca, José Carlos Martins, Vítor Vasconcelos and Alexandre Campos
Proteomes 2021, 9(4), 46; https://doi.org/10.3390/proteomes9040046
Available online: https://www.mdpi.com/2227-7382/9/4/46

12. “Insights into Mycobacterium leprae Proteomics and Biomarkers—An Overview”
by Sakshi Gautam, Devesh Sharma, Anjana Goel, Shripad A. Patil and Deepa Bisht
Proteomes 2021, 9(1), 7; https://doi.org/10.3390/proteomes9010007
Available online: https://www.mdpi.com/2227-7382/9/1/7

13. “Exoproteome Perspective on the Bile Stress Response of Lactobacillus johnsonii
by Bernadette B. Bagon, Valerie Diane V. Valeriano, Ju Kyoung Oh, Edward Alain B. Pajarillo, Ji Yoon Lee and Dae-Kyung Kang
Proteomes 2021, 9(1), 10; https://doi.org/10.3390/proteomes9010010
Available online: https://www.mdpi.com/2227-7382/9/1/10

14. “Misincorporation Proteomics Technologies: A Review”
by Joel R. Steele, Carly J. Italiano, Connor R. Phillips, Jake P. Violi, Lisa Pu, Kenneth J. Rodgers and Matthew P. Padula
Proteomes 2021, 9(1), 2; https://doi.org/10.3390/proteomes9010002
Available online: https://www.mdpi.com/2227-7382/9/1/2

15. “Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric”
by Benjamin C. Orsburn
Proteomes 2021, 9(3), 34; https://doi.org/10.3390/proteomes9030034
Available online: https://www.mdpi.com/2227-7382/9/3/34

16. “A Novel Urinary Proteomics Classifier for Non-Invasive Evaluation of Interstitial Fibrosis and Tubular Atrophy in Chronic Kidney Disease”
by Lorenzo Catanese, Justyna Siwy, Emmanouil Mavrogeorgis, Kerstin Amann, Harald Mischak, Joachim Beige and Harald Rupprecht
Proteomes 2021, 9(3), 32; https://doi.org/10.3390/proteomes9030032
Available online: https://www.mdpi.com/2227-7382/9/3/32

17. “Downregulation of Salivary Proteins, Protective against Dental Caries, in Type 1 Diabetes”
by Eftychia Pappa, Konstantinos Vougas, Jerome Zoidakis, William Papaioannou, Christos Rahiotis and Heleni Vastardis
Proteomes 2021, 9(3), 33; https://doi.org/10.3390/proteomes9030033
Available online: https://www.mdpi.com/2227-7382/9/3/33

18. “Current State of SLC and ABC Transporters in the Skin and Their Relation to Sweat Metabolites and Skin Diseases”
by Marcus M. K. Nielsen, Eva Aryal, Elnaz Safari, Biljana Mojsoska, Håvard Jenssen and Bala Krishna Prabhala
Proteomes 2021, 9(2), 23; https://doi.org/10.3390/proteomes9020023
Available online: https://www.mdpi.com/2227-7382/9/2/23

19. “The Protein Interactome of Glycolysis in Escherichia coli
by Shomeek Chowdhury, Stephen Hepper, Mudassir K. Lodi, Milton H. Saier, Jr. and Peter Uetz
Proteomes 2021, 9(2), 16; https://doi.org/10.3390/proteomes9020016
Available online: https://www.mdpi.com/2227-7382/9/2/16

20. “Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle”
by Britta Eggers, Karin Schork, Michael Turewicz, Katalin Barkovits, Martin Eisenacher, Rolf Schröder, Christoph S. Clemen and Katrin Marcus
Proteomes 2021, 9(2), 28; https://doi.org/10.3390/proteomes9020028
Available online: https://www.mdpi.com/2227-7382/9/2/28

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