Genetic Resources and Diversity of Castanea Species

A special issue of Plants (ISSN 2223-7747). This special issue belongs to the section "Plant Genetics, Genomics and Biotechnology".

Deadline for manuscript submissions: closed (31 January 2023) | Viewed by 13981

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Guest Editor
National Research Council (CNR), Institute of Biosciences and BioResources (IBBR), Via Università n. 133, 80055 Portici, Italy
Interests: plant agrobiodiversity; genetic and chemical variability; plant genetic resources; molecular characterization; biomolecular resources; DNA-based molecular markers; biosequences; DNA polymorphisms; bioinformatics; protein function prediction; nutrition and health; natural products; secondary metabolites; bioactive molecules; functional foods and nutraceuticals
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Special Issue Information

Dear Colleagues,

Chestnuts belong to the genus Castanea, which consists of 13 species in the Fagaceae, a large angiosperm family with eight genera including more than 900 species. Over time, natural events such as glaciations and, more recently, human expansion have significantly influenced chestnut dispersion. Today, four representative species of huge ecological and commercial value are largely cultivated in the temperate areas of the Northern Hemisphere over three continents (America, Asia, and Europe): the American chestnut (C. dentate Borkh.), the Chinese chestnut (C. mollissima Bl.), the European chestnut (C. sativa Mill.), and the Japanese chestnut (C. crenata Sieb. and Zucc.). These species form forest ecosystems furnishing resources (food, timber, fibers, biomass, etc.) and ecosystem services (air and water quality, climate mitigation, resilience, biodiversity, landscape, land protection, etc.). Despite their recognized importance in the last decades, chestnut cultivation has progressively declined due to infection and infestation associated with the introduction of alien species. Adversities have seriously decimated extensive cultivations, endangering many chestnut species and local varieties that are now at risk of being lost. New scientific acquisitions could offer the possibility of developing improved genotypes to renew the plantations. In recent times, the transferability of DNA-based molecular markers across species barrier proved conservative evolution and collinearity of genomes (synteny) among Castanea species. This also explains the occurrence of hybridization and introgression into the genus. Chestnut domestication and selective breeding led to a general reduction in genetic variability in comparison with natural populations. However, the specific genetic makeup of chestnut cultivars is still linked to their growth area so more studies are needed to investigate the richness of the gene pool of each chestnut species. Currently, DNA and RNA sequencing allow us to know a plant species like never before. A more in-depth knowledge of the underlying diversity of the chestnut, from the single nucleotide scale level to the biological level, is fundamental to making genetic resource richness immediately available for genetic improvement and new plantations. Genomic information, such as sequence databases associated with molecular marker sets, enable us to make genotype–phenotype correlations. Furthermore, in view of a global relaunch of chestnut cultivation, authenticity and traceability in the food supply chain are important factors to guarantee planting and protect producers and consumers from fraudulent commerce, respectively. In this context, comparative genomics can also be utilized to discover DNA variations with which to develop species- and cultivar-specific molecular markers. More importantly, the outcomes of these studies could be made available to all stakeholders for varietal discrimination. In conclusion, more research on the genetic resources of the Castanea species is still required to boost productivity, quality, and the sustainability of harvests, together with the safeguarding of the reservoirs of high genetic diversity at risk hotspots. To address these challenges, it is vital that we take advantage of multidisciplinary and innovative approaches with the aim of characterizing and exploiting the huge potential of chestnut diversity, both among and within species, as a source of new alleles and new genes.

This Special Issue of Plants focuses attention on the diversity of chestnut genetic resources as a potential tool to improve cultivation of the Castanea species by combining traditional and innovative technologies devoted to the identification of new traits of interest and the increase in productivity and nutritional value of fruit. Researchers are particularly welcome to submit unpublished original manuscripts and review articles to be included in this Special Issue.

Dr. Luigi De Masi
Guest Editor

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Keywords

  • Castanea species and varieties
  • chestnut biodiversity and conservation
  • natural populations
  • chestnut biology and adversities
  • chestnut orchards
  • genetic resource characterization
  • chestnut genomes and transcriptomes
  • DNA-based molecular markers
  • DNA polymorphisms

Published Papers (5 papers)

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Research

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9 pages, 2128 KiB  
Communication
Pilot Study on the Geographical Mapping of Genetic Diversity among European Chestnut (Castanea sativa Mill.) Cultivars in Southern Italy
by Marina Maura Calandrelli, Angelina Nunziata and Luigi De Masi
Plants 2023, 12(4), 917; https://doi.org/10.3390/plants12040917 - 17 Feb 2023
Viewed by 1316
Abstract
Knowledge of the spatial distribution of European chestnut (Castanea sativa Mill.) cultivar diversity is essential for managing and conserving the genetic resources of this fruit tree species in Southern Italy. To this goal, the present work investigated the feasibility of mapping, through [...] Read more.
Knowledge of the spatial distribution of European chestnut (Castanea sativa Mill.) cultivar diversity is essential for managing and conserving the genetic resources of this fruit tree species in Southern Italy. To this goal, the present work investigated the feasibility of mapping, through spatial representation, the distribution of genetic diversity of traditional chestnut varieties in the area of the Roccamonfina Regional Park in the Campania Region. After Principal Coordinates Analysis (PCoA) of molecular-genetic data, chestnuts formed varietal groups in a leopard spot on PCoA plots with a relatively high degree of genetic diversity. Successively, a Geographic Information System (GIS) tool utilized these molecular-genetic data to create a genetic divergence surface by geospatial interpolation on the geographic map of the Regional Park corresponding to each chestnut variety. The regions containing more biodiversity richness resulted in differentially colored from those containing cultivars less genetically distant from each other; thus, the area in study was consistently colored according to the allelic richness as evaluated by molecular-genetic markers. The combined use of tools for molecular and spatial analysis allowed for drafting genetic landscapes with the aim of extracting useful information for the safeguarding of the chestnut biodiversity at risk. Full article
(This article belongs to the Special Issue Genetic Resources and Diversity of Castanea Species)
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13 pages, 6027 KiB  
Article
Genetic Diversity and Population Structure of Chinese Chestnut (Castanea mollissima Blume) Cultivars Revealed by GBS Resequencing
by Xibing Jiang, Zhou Fang, Junsheng Lai, Qiang Wu, Jian Wu, Bangchu Gong and Yanpeng Wang
Plants 2022, 11(24), 3524; https://doi.org/10.3390/plants11243524 - 14 Dec 2022
Cited by 6 | Viewed by 1815
Abstract
Chinese chestnut (Castanea mollissima Bl.) is one of the earliest domesticated and cultivated fruit trees, and it is widely distributed in China. Because of the high quality of its nuts and its high resistance to abiotic and biotic stresses, Chinese chestnut could [...] Read more.
Chinese chestnut (Castanea mollissima Bl.) is one of the earliest domesticated and cultivated fruit trees, and it is widely distributed in China. Because of the high quality of its nuts and its high resistance to abiotic and biotic stresses, Chinese chestnut could be used to improve edible chestnut varieties worldwide. However, the unclear domestication history and highly complex genetic background of Chinese chestnut have prevented the efficiency of breeding efforts. To explore the genetic diversity and structure of Chinese chestnut populations and generate new insights that could aid chestnut breeding, heterozygosity statistics, molecular variance analysis, ADMIXTURE analysis, principal component analysis, and phylogenetic analysis were conducted to analyze single nucleotide polymorphism data from 185 Chinese chestnut landraces from five geographical regions in China via genotyping by sequencing. Results showed that the genetic diversity level of the five populations from different regions was relatively high, with an observed heterozygosity of 0.2796–0.3427. The genetic diversity level of the population in the mid-western regions was the highest, while the population north of the Yellow River was the lowest. Molecular variance analysis showed that the variation among different populations was only 2.07%, while the intra-group variation reached 97.93%. The Chinese chestnut samples could be divided into two groups: a northern and southern population, separated by the Yellow River; however, some samples from the southern population were genetically closer to samples from the northern population. We speculate that this might be related to the migration of humans during the Han dynasty due to the frequent wars that took place during this period, which might have led to the introduction of chestnut to southern regions. Some samples from Shandong Province and Beijing City were outliers that did not cluster with their respective groups, and this might be caused by the special geographical, political, and economic significance of these two regions. The findings of our study showed the complex genetic relationships among Chinese chestnut landraces and the high genetic diversity of these resources. Full article
(This article belongs to the Special Issue Genetic Resources and Diversity of Castanea Species)
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Review

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17 pages, 2071 KiB  
Review
Influence of Climate Change on Chestnut Trees: A Review
by Teresa R. Freitas, João A. Santos, Ana P. Silva and Hélder Fraga
Plants 2021, 10(7), 1463; https://doi.org/10.3390/plants10071463 - 16 Jul 2021
Cited by 29 | Viewed by 5334 | Correction
Abstract
The chestnut tree (Castanea spp.) is an important resource worldwide. It is cultivated due to the high value of its fruits and wood. The evolution between Castanea biodiversity and humans has resulted in the spread of chestnut genetic diversity. In 2019, the [...] Read more.
The chestnut tree (Castanea spp.) is an important resource worldwide. It is cultivated due to the high value of its fruits and wood. The evolution between Castanea biodiversity and humans has resulted in the spread of chestnut genetic diversity. In 2019, the chestnut tree area worldwide was approximately 596 × 103 ha for fruit production (Southern Europe, Southwestern United States of America, and Asia). In Europe 311 × 103 t were produced. Five genetic poles can be identified: three in Greece, the northwest coast of the Iberian Peninsula, and the rest of the Mediterranean. Over the years, there have been some productivity changes, in part associated with climate change. Climate is considered one of the main drivers of biodiversity and ecosystem change. In the future, new challenges associated with climate change are expected, which could threaten this crop. It is essential to identify the impacts of climate change on chestnut trees, improving the current understanding of climate-tree interconnections. To deal with these projected changes adaptation strategies must be planned. This manuscript demonstrates the impacts of climate change on chestnut cultivation, reviewing the most recent studies on the subject. Furthermore, an analysis of possible adaptation strategies against the potentially negative impacts was studied. Full article
(This article belongs to the Special Issue Genetic Resources and Diversity of Castanea Species)
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16 pages, 370 KiB  
Review
Endophytic Fungi and Ecological Fitness of Chestnuts
by Rosario Nicoletti, Gabriele Loris Beccaro, Agnieszka Sekara, Chiara Cirillo and Claudio Di Vaio
Plants 2021, 10(3), 542; https://doi.org/10.3390/plants10030542 - 13 Mar 2021
Cited by 14 | Viewed by 2731
Abstract
Chestnuts (Castanea spp.) are plants of relevant economic interest in the agro-sylvicultural contexts of mountain regions throughout the temperate zone, particularly in the northern hemisphere. In recent years, several biological adversities have repeatedly endangered species belonging to this genus, calling for coordinated [...] Read more.
Chestnuts (Castanea spp.) are plants of relevant economic interest in the agro-sylvicultural contexts of mountain regions throughout the temperate zone, particularly in the northern hemisphere. In recent years, several biological adversities have repeatedly endangered species belonging to this genus, calling for coordinated actions addressed to contrast their decline. These actions have mainly focused on the control of key pests/pathogens and the improvement of resistance/tolerance by the plant host, while the role of microorganisms as mediators of interactions between plants and the noxious agents has been less considered, essentially by reason of a limited knowledge on their ecological impact. In line with the increasing awareness of the basic importance of microbial symbionts in regulating plant fitness in both natural and crop contexts, this paper offers an overview on the occurrence and effects of endophytic fungi of chestnuts. Full article
(This article belongs to the Special Issue Genetic Resources and Diversity of Castanea Species)

Other

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1 pages, 196 KiB  
Correction
Correction: Freitas et al. Influence of Climate Change on Chestnut Trees: A Review. Plants 2021, 10, 1463
by Teresa R. Freitas, João A. Santos, Ana P. Silva and Hélder Fraga
Plants 2022, 11(11), 1518; https://doi.org/10.3390/plants11111518 - 06 Jun 2022
Cited by 2 | Viewed by 1282
Abstract
In the original article [...] Full article
(This article belongs to the Special Issue Genetic Resources and Diversity of Castanea Species)
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