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Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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State-of-the-Art Environmental Microbiology in China 2025

edited by

Zhiyong Li

submission deadline 31 Dec 2025 | 2 articles | Viewed by 2114 | Submission Open

Keywords: structure and function of microbial communities; microbial community genetics; transcriptomics; proteomics and metabolomics; microbial interaction; microbial communication; microbial ecology; microbial population biology; biogeochemical processes (C; N; P; S cycles); microbial life in extreme environments; evolutionary processes of microbial communities; biofilm formation and the surfaces of microbes; metabolic flux analysis and stable isotope probing (DNA; RNA and protein); microbiome biology of environmental habitats (e.g.; soil; rhizosphere or aquifer); microbial treatment: microbial biodegradation; microbial bioremediation; microbial and waste recycling; microbial pesticide; microbial fertilizer; and others; microbial pollution: pathogenic microorganisms in the environment (water/soil/air/food); microbial metabolism; environmental pollution (e.g.; microbial toxin); and others; microbiological monitoring: testing method and monitoring technique development

(This special issue belongs to the Section Environmental Microbiology)

Accelerated Topics in Public Health Microbiology and Microbial Food Safety

edited by

Aliyar Fouladkhah

submission deadline 31 Dec 2025 | 2 articles | Viewed by 1091 | Submission Open

Keywords: public health microbiology; microbial food safety; water safety; infectious disease; climate change

(This special issue belongs to the Section Public Health Microbiology)

Feature Paper in Food Microbiology

edited by

Giuseppe Comi

Antonio Bevilacqua

and Francesca Coppola

submission deadline 31 Dec 2025 | 2 articles | Viewed by 1057 | Submission Open

Keywords: new products; functional food; starter cultures and bioprotection; metagenomics and metabolomics; new identification methods; food waste recycling; novel pre-pro-syn-postbiotic applications; foodborne pathogens; innovations in traditional and new fermented foods; microorganisms in food ecosystems

(This special issue belongs to the Section Food Microbiology)

Gene Expression Profiling in Leishmania: From Basic Research to Vaccines and Drug Targets

edited by

Pedro José Alcolea

and Ana M. Alonso

submission deadline 31 Dec 2025 | Viewed by 500 | Submission Open

Keywords: Leishmania spp.; genomics; transcriptomics; proteomics; promastigotes; amastigotes; extracellular vesicles; vaccine candidates; drug target candidates; meta-analysis

(This special issue belongs to the Section Medical Microbiology)

The Interactions Between Nutrients and Microbiota

edited by

Renata Barczyńska-Felusiak

and

Agnieszka Rudzka

submission deadline 31 Dec 2025 | Viewed by 377 | Submission Open

Keywords: diet; nutrients; microbiota; human health

(This special issue belongs to the Section Food Microbiology)

Rare Human Pathogens

edited by Percy Schröttner

submission deadline 31 Dec 2025 | Viewed by 217 | Submission Open

Keywords: rare; pathogen; diseases; pathogenic bacteria

(This special issue belongs to the Section Medical Microbiology)

Plant-Microbe Interactome: The Green Dialogue Within the Plant Holobiont

edited by

Annamaria Bevivino

Alessia Fiore

and

Silvia Tabacchioni

submission deadline 31 Dec 2025 | Viewed by 199 | Submission Open

Keywords: soil microbiome; plant holobiont; one health; sustainable agriculture

(This special issue belongs to the Section Plant Microbe Interactions)

Microbiota and Microbiomes in Plants, Animals and Environment: A One Heath Perspective—Second Edition

edited by Moussa Diarra and

Wen Chen

submission deadline 31 Dec 2025 | 1 articles | Viewed by 164 | Submission Open

Keywords: microbiota/microbiome; antimicrobial; disease and health; environment; climate; One Health approach

The Host Response to Animal Virus Infection

edited by Liwei Li

submission deadline 31 Dec 2025 | Viewed by 131 | Submission Open

Keywords: respiratory virus; coronavirus; emerging pathogens in animals; host immune response; innate immunity; neutralizing antibody; non-coding RNA; viral infection; antiviral agents; antiviral strategy

(This special issue belongs to the Section Veterinary Microbiology)

New Trends in Medical Bacteriology: Diagnosis, Treatment and Prevention—Second Edition

edited by

Norma Velazquez-Guadarrama

and Ma. Guadalupe Aguilera-Arreola

submission deadline 31 Dec 2025 | Viewed by 106 | Submission Open

Keywords: medical bacteria; diagnosis; treatment; prevention

(This special issue belongs to the Section Medical Microbiology)

Host–Microbiome Cross-Talk in Cancer Development and Progression

edited by Subhadeep Das

submission deadline 31 Dec 2025 | Viewed by 96 | Submission Open

Keywords: dietary factors; epigenetic responses; bioinformatic and deep learning techniques; therapy; tumor microenvironment; microbiome-targeted therapies

(This special issue belongs to the Section Microbiomes)

Plant Microbiome: Pioneering Microbiome-Driven Strategies for Climate-Resilient Agriculture

edited by

Dilfuza Egamberdieva

submission deadline 31 Dec 2025 | Viewed by 94 | Submission Open

Keywords: plant– microbe interactions; climate change mitigation; carbon sequestration; soil health; greenhouse gas reduction; microbial inoculants; sustainable agriculture

(This special issue belongs to the Section Plant Microbe Interactions)

Diagnosis, Treatment, and Prevention of Biofilm Infections—How to Proceed?

edited by Niels Høiby and Claus Moser

submission deadline 31 Dec 2025 | Viewed by 84 | Submission Open

Keywords: biofilm; biofilm infections; chronic infections; foreign body infections; implant infections

(This special issue belongs to the Section Biofilm)

Microbiome Innovations in Food Systems for a Green Future

edited by

and

submission deadline 31 Dec 2025 | Viewed by 61 | Submission Open

Keywords: soil fertility; climate change; crop resilience; sustainable food processes; global food security; alternative protein production; dietary sustainability; food preservation; functional foods; human and animal health; waste management; circular economy; sustainable food policies and regulations

(This special issue belongs to the Section Microbiomes)

Beneficial Microbes: Food, Mood and Beyond—Third Edition

edited by

Mohamed Zommiti

and

Marc G. J. Feuilloley

submission deadline 31 Dec 2025 | Viewed by 59 | Submission Open

Keywords: prebiotics; probiotics; postbiotics; parabiotics; psycho-biotics; food; mood; benefactions; safety; antibiotics; neurotransmitters; humans; animals

(This special issue belongs to the Section Food Microbiology)

Microbiome- and Host-Mediated Effects of Prebiotics in Foods and Feeds

edited by

Ian Connerton

and Adam Lee

submission deadline 31 Dec 2025 | Viewed by 39 | Submission Open

Keywords: prebiotics; gut microbiota; gut health; gut architecture; gut immunomodulation; beneficial microbes; oligosaccharides; microbiome manipulation

(This special issue belongs to the Section Food Microbiology)

Probiotic and Postbiotic Properties of Lactobacillus, 2nd Edition

edited by

Sang-Ho Baik

submission deadline 31 Dec 2025 | Viewed by 28 | Submission Open

Keywords: Lactobacillus; probiotics; postbiotics; novel probiotic properties; next-generation probiotics

(This special issue belongs to the Section Food Microbiology)

Bloodstream Infection: Common and Uncommon Pathogens

edited by Carola Mauri

submission deadline 31 Dec 2025 | Viewed by 27 | Submission Open

Keywords: bloodstream infection (BSI); pathogens; antibiotic resistance; new drugs

(This special issue belongs to the Section Medical Microbiology)

Chemolithoautotrophic Microorganisms—Pioneers of Biospheric Evolution and Sustainable Biotechnology

edited by Lijing Jiang

submission deadline 31 Dec 2025 | Viewed by 23 | Submission Open

Keywords: chemolithoautotrophic microorganisms; ancient metabolic pathways; extreme environmental; microbial– mineral interactions; industrial applications; extraterrestrial life

(This special issue belongs to the Section Environmental Microbiology)

Unraveling the Mysteries of Gut Microbiota to Advance Sustainable Aquaculture

edited by Qunlan Zhou

submission deadline 31 Dec 2025 | Viewed by 12 | Submission Open

Keywords: gut microbiota; functional probiotics; immunity; nutrition; multi-omics

(This special issue belongs to the Section Gut Microbiota)

Research on Airborne Microbial Communities

edited by

Changliang Nie

submission deadline 31 Dec 2025 | Viewed by 10 | Submission Open

Keywords: atmospheric microorganisms; bioaerosol; microbial community; air pollutant; climate change

(This special issue belongs to the Section Environmental Microbiology)

Gut Microbiome in Homeostasis and Disease, 3rd Edition

edited by

Michael Doulberis

submission deadline 15 Jan 2026 | Viewed by 3 | Submission Open

Keywords: gut microbiome; dysbiosis; gut– brain axis; gut– liver axis; fecal microbiota transplantation; gut probiotics; commensal and non-commensal microorganisms; Helicobacter

(This special issue belongs to the Section Gut Microbiota)

Artificial Intelligence as a Tool for Combating Antimicrobial Resistance

edited by

Sergi Maicas

and

Jaume Segura-Garcia

submission deadline 31 Jan 2026 | Viewed by 51 | Submission Open

Keywords: AI; AMR; drug discovery; datasets; antibiotics

(This special issue belongs to the Section Microbial Biotechnology)

Advances in Microbial Biotechnological Approaches for Carbohydrate Biosynthesis

edited by Haining Tan, Yuhui Wang and

Lele Liu

submission deadline 31 Jan 2026 | Viewed by 8 | Submission Open

Keywords: microbial carbohydrate biosynthesis; glycoengineering; synthetic biology; enzyme engineering; glycoconjugate vaccines

(This special issue belongs to the Section Microbial Biotechnology)

Salmonella Infections: Trends and Updates

edited by

Taseen Desin

submission deadline 28 Feb 2026 | 5 articles | Viewed by 6651 | Submission Open

Keywords: salmonellosis; epidemiology and surveillance; molecular biology and pathogenesis; antimicrobial resistance; one-health perspectives; prevention and control strategies

(This special issue belongs to the Section Public Health Microbiology)

Probiotics, Prebiotics, and Synbiotics in Animal Nutrition and Health, and Food Safety

edited by María Esther Ortega-Cerrilla

submission deadline 28 Feb 2026 | 4 articles | Viewed by 6375 | Submission Open

Keywords: probiotics; prebiotics; synbiotics; animals; food safety

(This special issue belongs to the Section Food Microbiology)

Human Respiratory Syncytial Virus—Biology, Diagnosis and Prevention

edited by

Yurong Tan

submission deadline 28 Feb 2026 | 3 articles | Viewed by 5781 | Submission Open

Keywords: human respiratory syncytial virus; medical microbiology; molecular biology; virus diagnosis; infection prevention

(This special issue belongs to the Section Public Health Microbiology)

Rhizosphere Bacteria and Fungi That Promote Plant Growth

edited by Cesar Arriagada-Escamilla

submission deadline 28 Feb 2026 | 5 articles | Viewed by 5416 | Submission Open

Keywords: rhizosphere; fungi; bacteria; symbionts; microbial interactions; plant growth promotion

(This special issue belongs to the Section Plant Microbe Interactions)

Natural and Urban Forest Viromes and the Tree-Associated Microbiome: Composition, Properties, and Interactions

edited by

Julio J. Diez

and Artemis Rumbou

submission deadline 28 Feb 2026 | 1 articles | Viewed by 729 | Submission Open

Keywords: virome; plant pathogenic virus; mycovirus; biocontrol agent; microbiota

(This special issue belongs to the Section Plant Microbe Interactions)

Women’s Special Issue Series: Microorganisms

edited by

Antonella d'Arminio Monforte

and

Antonella Cingolani

submission deadline 8 Mar 2026 | Viewed by 73 | Submission Open

Keywords: women; microorganisms; microbiology

Host–Virus Co-Evolution in Aquatic Species: Insights into Disease Dynamics

edited by

Myung-Hwa Jung

and

Min Sun Kim

submission deadline 31 Mar 2026 | Viewed by 38 | Submission Open

Keywords: host– virus interactions; co-evolution; aquatic disease dynamics; immune response; viral pathogenesis

(This special issue belongs to the Section Virology)

Pseudomonas Biology and Biodiversity

edited by

Dimitris Mossialos

submission deadline 30 Apr 2026 | 1 articles | Viewed by 497 | Submission Open

Keywords: Pseudomonas; biodiversity; omic technologies; community structure; phylogenomics; metagenomics; biotechnological applications

(This special issue belongs to the Section Plant Microbe Interactions)

Bacterial Pathogenesis and Host Immune Responses

edited by Zhihui Cheng

submission deadline 31 May 2026 | 1 articles | Viewed by 1909 | Submission Open

Keywords: host– pathogen interactions; pathogenic bacteria; pathogenesis; bacterial infections; disease mechanisms; host immune responses; inflammatory responses ; vaccine development; antimicrobial resistance; therapeutic strategies

(This special issue belongs to the Section Molecular Microbiology and Immunology)

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