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Host Infectomics in the Childhood 2.0

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Genetics and Genomics".

Deadline for manuscript submissions: closed (31 May 2022) | Viewed by 2701

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Departamento de Anatomía Patolóxica e Ciencias Forenses, Instituto de Ciencias Forenses, Facultade de Medicina, University of Santiago de Compostela, Galicia, Spain
Interests: genetics; genomics; transcriptomics; epigenomics; exomes; complete genomes; ultrasequencing; NGS; DNA polymorphisms; single nucleotide polymorphism; SNP; short tandem repeat; STR; autosomes; complex multifactorial diseases; rare diseases; population genetics; evolutionary genetics
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Special Issue Information

Dear Colleagues,

Despite the availability of new vaccines and antibacterial agents suppressing microbial pathogens, infectious diseases are among the leading cause of morbidity and mortality worldwide. While there are a number of studies dealing with infections in adults (mainly focused on some particular diseases, e.g., tuberculosis) and/or pathogens, less attention has been devoted to the pediatric age. To overcome this deficiency, several international consortia have emerged in the last decade aimed at investigating life-threatening infections affecting childhood.

‘Omic’ sciences are gaining growing attention in parallel with the development of new and cost-effective technologies, but also bioinformatic and mathematical solutions that allow dealing with big data from massive genotyping and sequencing technologies. The field of infectiology is one of the many in biomedicine that is benefiting from these new achievements, and in particular, the area studying host response to infection from different ‘omic’ perspectives, namely, host infectomics. Thus, there is now increasing evidence supporting that it is not only the pathogen that decides how and when to infect the host, but also the biological predisposition of the host to be infected by the pathogen. Most of the genomic studies published to date have focused their attention on genomics, first by exploring a few thousands of single nucleotide polymorphisms (SNPs) distributed throughout the whole genome in large case-control samples (e.g., population-based genome-wide association studies; GWAS), and more recently using parallel sequencing procedures (e.g., whole exome sequencing, WES). There are also interesting attempts in the terrain of transcriptomic, using microarrays and more recently RNAseq, to investigate the host genetic expression response to different infections and pathogens.

We invite researchers to contribute original research articles and reviews focused on host infectomics in children. Topics of interest include but are not limited to the following:

  • Genomics, transcriptomics, epigenomics, proteomics, etc.;
  • Systems biology;
  • Studies exploring big data resources and using discovery-based procedures and providing insights on host biomarkers for infections.

Prof. Dr. Antonio Salas
Guest Editor

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Published Papers (1 paper)

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Research

12 pages, 2798 KiB  
Article
Allelic Variations in the Human Genes TMPRSS2 and CCR5, and the Resistance to Viral Infection by SARS-CoV-2
by Girolamo Aurelio Vitello, Concetta Federico, Francesca Bruno, Mirella Vinci, Antonino Musumeci, Alda Ragalmuto, Valentina Sturiale, Desiree Brancato, Francesco Calì and Salvatore Saccone
Int. J. Mol. Sci. 2022, 23(16), 9171; https://doi.org/10.3390/ijms23169171 - 15 Aug 2022
Cited by 5 | Viewed by 1816
Abstract
During the first wave of COVID-19 infection in Italy, the number of cases and the mortality rates were among the highest compared to the rest of Europe and the world. Several studies demonstrated a severe clinical course of COVID-19 associated with old age, [...] Read more.
During the first wave of COVID-19 infection in Italy, the number of cases and the mortality rates were among the highest compared to the rest of Europe and the world. Several studies demonstrated a severe clinical course of COVID-19 associated with old age, comorbidities, and male gender. However, there are cases of virus infection resistance in subjects living in close contact with infected subjects. Thus, to explain the predisposition to virus infection and to COVID-19 disease progression, we must consider, in addition to the genetic variability of the virus and other environmental or comorbidity conditions, the allelic variants of specific human genes, directly or indirectly related to the life cycle of the virus. Here, we analyzed three human genetic polymorphisms belonging to the TMPRSS2 and CCR5 genes in a sample population from Sicily (Italy) to investigate possible correlations with the resistance to viral infection and/or to COVID-19 disease progression as recently described in other human populations. Our results did not show any correlations of the rs35074065, rs12329760, and rs333 polymorphisms with SARS-CoV-2 infection or with COVID-19 disease severity. Further studies on other human genetic polymorphisms should be performed to identify the major human determinants of SARS-CoV-2 viral resistance. Full article
(This article belongs to the Special Issue Host Infectomics in the Childhood 2.0)
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