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Molecular Mechanisms of Plant Adaptation and Stress Tolerance Under Changing Environmental Conditions

A special issue of Current Issues in Molecular Biology (ISSN 1467-3045). This special issue belongs to the section "Molecular Plant Sciences".

Deadline for manuscript submissions: 28 February 2026 | Viewed by 1219

Special Issue Editor


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Guest Editor
1. Guangdong-Hong Kong Joint Laboratory for Carbon Neutrality, Jiangmen Laboratory of Carbon Science and Technology, Jiangmen 529199, China
2. College of Education Sciences (CES), The Hong Kong University of Science and Technology (Guangzhou), Guangzhou 511453, China
Interests: plant genetics and genomics; molecular plant physiology; plant breeding and genetics; synthetic biology; abiotic stress; secondary metabolism; plant growth and development
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Special Issue Information

Dear Colleagues,

Rapid environmental change is reshaping the way plants grow, develop, and survive. Extreme temperatures, prolonged droughts, salinity intrusion, flooding, nutrient imbalances, shifting photoperiods, and emerging pathogens now occur more frequently and often in combination. Elevated CO2 (eCO2) adds another layer: it can enhance photosynthesis and biomass, yet rewire carbon–nitrogen balance, stomatal behavior, secondary metabolism, and defense mechanisms. eCO2 rarely acts alone; its effects modulate and are modulated by water deficit, heat, ozone, and nutrient limitations, yielding outcomes that are genotype-, tissue-, and stage-specific. These stresses trigger complex and sometimes antagonistic molecular responses, challenging the resilience of even the most adaptable species.

Despite extensive progress in plant genomics, physiology, and breeding, we still lack an integrated understanding of how plants perceive, prioritize, and coordinate defense and adaptation across diverse and fluctuating environmental conditions. This Special Issue seeks contributions that move beyond single-factor analyses to unravel the molecular circuitry, signaling crosstalk, and physiological adjustments underpinning tolerance to combined and sequential stresses. By integrating molecular biology, systems-level omics, physiology, and predictive modeling studies, we aim to bridge the gap between controlled experiments and real-world agricultural and ecological contexts.

Topics of interest include, but are not limited to, the following:

  • Decoding integrators and crosstalk among hormone, redox, sugar, TOR/SnRK1, and calcium signaling under multi-stress conditions.
  • Understanding carbon–nitrogen reallocation and metabolic remodeling (primary, secondary, and structural) that govern tolerance vs. yield.
  • Disentangling root–soil–microbiome mechanisms, including rhizosphere signaling and nutrient acquisition under eCO2 and abiotic stress.
  • Mapping spatial and temporal heterogeneity via single-cell/spatial omics, real-time imaging, and high-throughput phenotyping.
  • Leveraging natural variation, pangenomes, epigenetic memory, and genome editing to identify deployable tolerance traits.
  • Mechanism-anchored engineering (CRISPR/prime editing, synthetic circuits) and predictive modeling/AI that generalize from growth chambers to fields.

Original research, short communications, methods/resources, data papers, and concise mechanistic reviews that integrate multi-omics, physiology, and modeling are encouraged. Studies on crops, trees, and model plants are all in scope, especially those validating targets across environments.

Dr. Naveed Ahmad
Guest Editor

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Keywords

  • elevated CO2
  • drought–heat–salinity
  • carbon–nitrogen balance
  • TOR/SnRK1
  • hormone crosstalk
  • redox signaling
  • microbiome
  • single-cell/spatial omics
  • phenomics
  • genome editing
  • predictive breeding

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Published Papers (2 papers)

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Research

22 pages, 4179 KB  
Article
C2H2 Zinc-Finger Transcription Factors Coordinate Hormone–Stress Crosstalk to Shape Expression Bias of the Flavonoid Pathway in Safflower (Carthamus tinctorius L.)
by Yue Chang, Abdul Wakeel Umar, Minghui Ma, Yuru Zhang, Naveed Ahmad and Xiuming Liu
Curr. Issues Mol. Biol. 2025, 47(12), 1023; https://doi.org/10.3390/cimb47121023 - 8 Dec 2025
Viewed by 190
Abstract
C2H2-type zinc-finger transcription factors (ZFPs) play essential roles in plant stress signaling and development; however, their putative functions in safflower have not been systematically characterized. Leveraging the reference genome of the safflower cultivar ‘Jihong-1’ (Carthamus tinctorius L.), we investigated the C2H2 family [...] Read more.
C2H2-type zinc-finger transcription factors (ZFPs) play essential roles in plant stress signaling and development; however, their putative functions in safflower have not been systematically characterized. Leveraging the reference genome of the safflower cultivar ‘Jihong-1’ (Carthamus tinctorius L.), we investigated the C2H2 family and identified 62 CtC2H2 genes. Comparative phylogeny with Arabidopsis revealed six subfamilies characterized by shared features such as exon–intron organization and conserved QALGGH motif. Promoter analysis identified multiple light- and hormone-responsive cis-elements (e.g., G-box, Box 4, GT1-motif, ABRE, CGTCA/TGACG), suggesting potential multi-layered regulation. RNA-seq and qRT-PCR analysis identified tissue-specific candidate genes, with CtC2H2-22 emerging as the most petal-specific (6-fold upregulation), alongside CtC2H2-02, CtC2H2-23, and CtC2H2-24 in seeds (~3-fold), and CtC2H2-21 in roots (3-fold). Under abiotic stresses, CtC2H2 genes also demonstrated rapid and dynamic responses. Under cold stress, CtC2H2 genes showed a rapid temporal pattern of expression, with early increase for genes like CtC2H2-45 (>4-fold at 3–6 h) and a delayed increase for CtC2H2-23 at 9 h. A majority of CtC2H2 genes (8/12) were upregulated by ABA treatment, with CtC2H2-47 suggesting 3.5-fold induction. ABA treatment also led to a significant increase (2.5-fold) in total leaf flavonoid content at 24h, which is associated with the significant upregulation of flavonoid pathway genes CtANS (5-fold) and CtCHS (3.3-fold). Simultaneously, UV-B radiation induced two distinct expression patterns: a significant suppression of four genes (CtC2H2-23 decreased to 30% of control) and a complex fluctuating pattern, with CtC2H2-02 upregulated at 48 h (2.8-fold). MeJA elicitation revealed four complex expression profiles, from transient induction (CtC2H2-02, 2.5-fold at 3 h) to multi-phasic oscillations, demonstrating the functional diversity of CtC2H2-ZFPs in jasmonate signaling. Together, these results suggest stress and hormone-responsive expression modules of C2H2 ZFPs for future functional studies aimed at improving stress adaptation and modulating specialized metabolism in safflower. Full article
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13 pages, 979 KB  
Article
Key Genes Involved in the Saline–Water Stress Tolerance of Aloe vera
by María Mota-Ituarte, Jesús Josafath Quezada-Rivera, Aurelio Pedroza-Sandoval, Jorge Sáenz-Mata and Rafael Minjares-Fuentes
Curr. Issues Mol. Biol. 2025, 47(12), 1000; https://doi.org/10.3390/cimb47121000 - 28 Nov 2025
Viewed by 317
Abstract
Aloe vera is well known for its high tolerance to adverse environmental conditions. However, the molecular pathways governing its adaptive response mechanisms to abiotic stress remain unclear. Thus, the expression of AOG, ABA2, and GMMT genes in Aloe vera plants subjected [...] Read more.
Aloe vera is well known for its high tolerance to adverse environmental conditions. However, the molecular pathways governing its adaptive response mechanisms to abiotic stress remain unclear. Thus, the expression of AOG, ABA2, and GMMT genes in Aloe vera plants subjected to saline–water stress was evaluated, with the expression of key genes significantly influenced by stress response. AOG and GMMT expression levels were higher under field capacity (FC) than under water deficit (PWP), with AOG reaching ~4.3% under 40 mM salinity at FC. In contrast, ABA2 was strongly upregulated under PWP, particularly at 40 mM salinity, with expression increasing up to fivefold compared to the control. However, salinity above 40 mM led to reduced ABA2 expression. GMMT was overexpressed (~6%) under severe stress, while mannose content increased significantly with salinity but remained unaffected by soil moisture. These findings highlight gene-specific responses to combined stress. Full article
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