The Evolution and Function of Repetitive DNA

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Molecular Biology".

Deadline for manuscript submissions: 30 June 2024 | Viewed by 1544

Special Issue Editors


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Guest Editor
1. CytoGenomics Lab, Department of Genetics and Biotechnology, University of Trás-os-Montes e Alto Douro, Vila Real, Portugal
2. BioISI—Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of Lisbon, Lisbon, Portugal
Interests: repetitive DNA sequences; satellite DNA; mobile elements; centromere; telomere; satellitome; evolution of repetitive sequences; genome architecture; chromosome restructuring; repetitive DNA transcription; cancer and repetitive sequences
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E-Mail Website
Guest Editor
1. CytoGenomics Lab, Department of Genetics and Biotechnology, University of Trás-os-Montes e Alto Douro, Vila Real, Portugal
2. BioISI—Biosystems & Integrative Sciences Institute, Faculty of Sciences, University of Lisbon, Lisbon, Portugal
Interests: satellite DNA; satellite DNA evolution; karyotype restructuring; human pericentromeric sequences; satellite non-coding RNA; chromosome rearrangements

Special Issue Information

Dear Colleagues,

Repetitive DNA has long been one of the most intriguing but also overlooked portions of eukaryotic genomes. This class of DNA encompasses sequences either organized in a tandem fashion (including satellite DNA) or dispersed in the genome (transposable elements). Repetitive DNA can be highly variable between species in terms of sequence, abundance, and chromosome location. This results from their astonishing ability to change in short evolutionary periods due to the fast-evolving nature of DNA. Moreover, their dynamic behavior may also contribute to genome remodeling by accompanying the rearrangements.

These sequences can build up important structures such as telomeres and centromeres, which are responsible for the proper chromosome segregation, and have been implicated in numerous important functions in the genome. The ability of repetitive sequences to originate non-coding RNA transcripts, which are associated with regulatory and structural functions, has constituted a turnover point. For instance, satellite non-coding RNAs and transposable elements deregulation have been associated to cancer, autoimmune, developmental and degenerative diseases. There is still a long way to go for the knowledge of repetitive DNA function to match that of the coding sequences, and their repetitive nature still poses some technical issues. However, the available genomic technologies and the continuation of the development of new methodologies is potentiating the study of these sequences in the genome of different species.

We kindly invite the submission of manuscripts covering these topics, exploring the role of the transcription of repetitive DNA and the significance of its deregulation in the genome, the hindering of the evolution mechanisms that shape these sequences and their contribution in remodeling genomes.

Prof. Dr. Raquel Chaves
Dr. Sandra Louzada
Guest Editors

Manuscript Submission Information

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Keywords

  • repetitive DNA
  • satellite DNA
  • transposable elements
  • non-coding RNA transcripts
  • evolution of repetitive DNA
  • genome instability
  • genome evolution

Published Papers (1 paper)

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Review

14 pages, 968 KiB  
Review
Answering the Cell Stress Call: Satellite Non-Coding Transcription as a Response Mechanism
by Marisa Fonseca-Carvalho, Gabriela Veríssimo, Mariana Lopes, Daniela Ferreira, Sandra Louzada and Raquel Chaves
Biomolecules 2024, 14(1), 124; https://doi.org/10.3390/biom14010124 - 17 Jan 2024
Cited by 1 | Viewed by 1166
Abstract
Organisms are often subjected to conditions that promote cellular stress. Cell responses to stress include the activation of pathways to defend against and recover from the stress, or the initiation of programmed cell death to eliminate the damaged cells. One of the processes [...] Read more.
Organisms are often subjected to conditions that promote cellular stress. Cell responses to stress include the activation of pathways to defend against and recover from the stress, or the initiation of programmed cell death to eliminate the damaged cells. One of the processes that can be triggered under stress is the transcription and variation in the number of copies of satellite DNA sequences (satDNA), which are involved in response mechanisms. Satellite DNAs are highly repetitive tandem sequences, mainly located in the centromeric and pericentromeric regions of eukaryotic chromosomes, where they form the constitutive heterochromatin. Satellite non-coding RNAs (satncRNAs) are important regulators of cell processes, and their deregulation has been associated with disease. Also, these transcripts have been associated with stress-response mechanisms in varied eukaryotic species. This review intends to explore the role of satncRNAs when cells are subjected to adverse conditions. Studying satDNA transcription under various stress conditions and deepening our understanding of where and how these sequences are involved could be a key factor in uncovering important facts about the functions of these sequences. Full article
(This article belongs to the Special Issue The Evolution and Function of Repetitive DNA)
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