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Seeds, Volume 4, Issue 2 (June 2025) – 11 articles

Cover Story (view full-size image): The Canary Islands host multiple Phoenix palm species and hybrids with overlapping traits, complicating the identification of species used by ancient peoples. This study presents the first Bayesian probabilistic approach for identifying archaeological Phoenix seeds, analyzing thousands of specimens from modern collections, pre-Hispanic sites (3rd–16th centuries CE), and fossils. Researchers carbonized modern seeds to understand preservation effects and used hierarchical clustering with Bayesian inference to assign taxonomic probabilities. Results show, with high posterior probabilities (69-100%), that archaeological specimens are endemic Phoenix canariensis rather than cultivated P. dactylifera, revealing pre-Hispanic Canarians relied heavily on native palms for food, fiber, and construction. This methodology provides a framework for resolving taxonomic uncertainty in archaeobotany. View this paper
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9 pages, 816 KiB  
Communication
Quantification of Glucosinolates in Seeds by Solid-State 13C-Nuclear Magnetic Resonance (NMR)
by Stefania Mazzini, Marco Zuccolo, Angela Bassoli, Claudio Gardana and Gigliola Borgonovo
Seeds 2025, 4(2), 27; https://doi.org/10.3390/seeds4020027 - 19 Jun 2025
Viewed by 111
Abstract
Solid-state 13C NMR spectroscopy using cross-polarization magic-angle spinning is a highly valuable technique for the semi-quantitative analysis of complex solid matrices. One of its key advantages is that it does not require any manipulation of the matrix, such as extractions or other [...] Read more.
Solid-state 13C NMR spectroscopy using cross-polarization magic-angle spinning is a highly valuable technique for the semi-quantitative analysis of complex solid matrices. One of its key advantages is that it does not require any manipulation of the matrix, such as extractions or other treatments, which is particularly important for preserving the integrity of unstable secondary metabolites. Glucosinolates (β-thioglucoside-N-hydrosulphates) are crucial secondary metabolites specific to Brassica species, and many of them are known to be highly unstable. In this study, we evaluated solid-state nuclear magnetic resonance spectroscopy as an alternative method for the identification and quantification of total glucosinolates in the seeds of Sisymbrium officinale, Brassica napus, Sinapis alba, Brassica nigra, and Moringa oleifera. The results obtained with this method showed good agreement with those from conventional chemical analyses of the seed material. Although, based on a limited number of samples, this preliminary study suggests that the proposed approach could be a useful alternative for quantifying total glucosinolate content in seeds. Full article
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14 pages, 658 KiB  
Review
ROP Signaling in Plant Seed Germination Under Abiotic Stress
by Liuqin Zhang, Mingxuan Xu, Qingqing Li, Lei Hou and Mi Zhang
Seeds 2025, 4(2), 26; https://doi.org/10.3390/seeds4020026 - 27 May 2025
Viewed by 323
Abstract
Seed germination is a crucial phase where a plant embryo transitions from dormancy to active growth, emerging as a seedling. This intricate process is highly susceptible to environmental cues, particularly abiotic stress factors including drought, salinity, and temperature extremes, which can profoundly influence [...] Read more.
Seed germination is a crucial phase where a plant embryo transitions from dormancy to active growth, emerging as a seedling. This intricate process is highly susceptible to environmental cues, particularly abiotic stress factors including drought, salinity, and temperature extremes, which can profoundly influence both germination success and subsequent plant development. Among the various cellular components that modulate plant responses to these stresses, Rho of Plants (ROP) emerges as a pivotal regulator. Under abiotic stress, ROP signaling components integrate with the core abscisic acid (ABA) signaling pathway by regulating gene transcription and protein stability, modulating subcellular localization, converting protein activity, and engaging in competitive interactions. This review summarizes recent findings on roles of ROP signaling in regulating plant adaptive responses to abiotic stress, whilst explores potential involvement of ROPs in seed germination. This review summarizes the effects of ROP proteins and their effectors, such as GEF, on the seed germination process. It preliminarily elucidates the crosstalk mechanisms between these proteins and the ABA signaling pathway, thereby gaining a deeper understanding of the role of ROP signaling in regulating plant adaptive responses to abiotic stresses. Full article
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18 pages, 1759 KiB  
Article
Spermidine Treatments Improve Germination of Long-Term Stored Seeds: A Case Study of Populus alba Clone ‘Villafranca’
by Shraddha Shridhar Gaonkar, Lorenzo Ciceri, Matteo Romelli, Andrea Pagano, Alessio Giovannelli, Pier Mario Chiarabaglio, Alma Balestrazzi and Anca Macovei
Seeds 2025, 4(2), 25; https://doi.org/10.3390/seeds4020025 - 20 May 2025
Viewed by 345
Abstract
Populus alba clone ‘Villafranca’ (white poplar), highly suitable for biomass production and ecosystem restoration, is a model system for molecular and physiological studies, but no reports are available concerning seed quality. Although clonal propagation is the preferred approach for commercial purposes, attention should [...] Read more.
Populus alba clone ‘Villafranca’ (white poplar), highly suitable for biomass production and ecosystem restoration, is a model system for molecular and physiological studies, but no reports are available concerning seed quality. Although clonal propagation is the preferred approach for commercial purposes, attention should be given to face genetic variability losses in the existing germplasm. To address this challenge, new populations should be developed starting from seeds, overcoming the issues of low germinability and viability during storage. This study proposes to develop tailored treatments to improve the germination of long-term stored white poplar seeds. Priming and soaking protocols, based on the use of water or spermidine (Spd, 50 and 100 μM), were tested. Treatment efficacy was assessed based on germination parameters, reactive oxygen species (ROS) profiles, and the expression patterns of genes with key roles in early seed germination. Soaking with 100 μM Spd for 4 h significantly enhanced germination percentage and speed. Low ROS levels were evidenced in the Spd-treated seeds, compared to water-soaked seeds. High expression of genes involved in desiccation tolerance acquisition, polyamine biosynthesis, and antioxidant defense was observed only in dry seeds. The results are discussed in view of the potential protective role of Spd. Full article
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13 pages, 1102 KiB  
Review
Innovative Approaches for Engineering the Seed Microbiome to Enhance Crop Performance
by Piao Yang, Ling Lu, Abraham Condrich, Gavin A. Muni, Sean Scranton, Shixiang Xu, Ye Xia and Shuai Huang
Seeds 2025, 4(2), 24; https://doi.org/10.3390/seeds4020024 - 14 May 2025
Viewed by 553
Abstract
Seed science is the comprehensive study of seeds. It encompasses their biology, production, technology, genetics, physiology, ecology, and applications in agriculture and conservation. Seed science has undergone transformative advancements through the integration of microbial technologies, with beneficial microorganisms emerging as critical tools for [...] Read more.
Seed science is the comprehensive study of seeds. It encompasses their biology, production, technology, genetics, physiology, ecology, and applications in agriculture and conservation. Seed science has undergone transformative advancements through the integration of microbial technologies, with beneficial microorganisms emerging as critical tools for enhancing germination, seedling vigor, and crop resilience. Research demonstrates that microbial treatments improve nutrient uptake, hormonal regulation, and stress tolerance while establishing early symbiotic relationships with plants. This review synthesizes recent advances in understanding the roles of beneficial microbes in seed science, focusing on their impact on seed germination, seedling growth, and plant health. We explore the composition and transmission of seed microbiomes, highlighting the vertical transfer of microbes from parent plants to seeds and the influence of environmental factors on microbial community structure. The review also discusses innovative approaches to seed microbiome engineering. Particular attention is given to seed biopriming with plant growth-promoting bacteria (PGPB), which has shown significant potential in improving germination rates, seedling vigor, and crop productivity. Specific microbial strains, such as Trichoderma species and Pseudomonas fluorescens, are discussed with emphasis on their mechanisms of action in enhancing plant performance. The review also addresses the impact of breeding on seed microbiomes and explores emerging research directions, including the development of tailored microbial inoculants and the investigation of intracellular seed bacteria. By synthesizing these findings, this review aims to provide a comprehensive summary of the current state of seed microbiome research and its implications in seed science for sustainable agriculture. Full article
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14 pages, 3220 KiB  
Article
Seed Germination of Garberia heterophylla (W. Bartram) Merr. & F. Harper, a Pollinator Plant with Ornamental Appeal
by Grace Carapezza, Sandra B. Wilson, Mica McMillan and Edzard van Santen
Seeds 2025, 4(2), 23; https://doi.org/10.3390/seeds4020023 - 9 May 2025
Viewed by 365
Abstract
Seed propagation is the primary means of reproducing many native and endemic species, including garberia [Garberia heterophylla (W. Bartram) Merrill & F. Harper]. This attractive pollinator plant, native to Florida, is scarcely found in nursery production and largely unknown to the gardening [...] Read more.
Seed propagation is the primary means of reproducing many native and endemic species, including garberia [Garberia heterophylla (W. Bartram) Merrill & F. Harper]. This attractive pollinator plant, native to Florida, is scarcely found in nursery production and largely unknown to the gardening community. To better understand the seed biology of garberia, a series of experiments were conducted to evaluate the effects of population on seed viability and germination response to four seasonal temperatures, as well as the effects of time on seed storability. Initial seed viability was 49% and 60% for Central and North Florida populations, respectively. Seeds germinated readily, indicating non-dormancy, with significant effects of population and temperature observed. Overall, on day 28, a greater germination proportion was observed from seeds collected from North Florida than Central Florida across temperatures, except for winter (11/22 °C), where responses were similar. The greatest germination proportion for seeds collected from North Florida was observed at 15/27 °C (fall) and 19/29 °C (spring), whereas the greatest germination from Central Florida was observed at 11/22 °C (winter), with the steepest decline observed at summer temperatures (24/33 °C). Further, it was observed that garberia seeds are intolerant of long-term storage, losing viability as early as 3 months under conventional cold or room temperature storage and decreasing substantially more after 6 months. These findings contribute to the overall understanding of the seed biology of underutilized species such as garberia, key to the development of efficient and reliable propagation systems for our nursery industry. Full article
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15 pages, 5404 KiB  
Article
Effectiveness of Pre-Sowing Treatments on Seed Germination of Nine Acacia Species from Al-Baha Region in Saudi Arabia
by Ali A. Alzandi, Ibrahim M. Aref and Nels Grevstad
Seeds 2025, 4(2), 22; https://doi.org/10.3390/seeds4020022 - 30 Apr 2025
Viewed by 564
Abstract
Acacia species are important trees in arid ecosystems due to their diverse ecological roles, such as providing vegetation cover, community structures, food resources for animals, soil stabilization, and erosion prevention. However, in the Arabian Peninsula, Acacia species are declining due to climate change, [...] Read more.
Acacia species are important trees in arid ecosystems due to their diverse ecological roles, such as providing vegetation cover, community structures, food resources for animals, soil stabilization, and erosion prevention. However, in the Arabian Peninsula, Acacia species are declining due to climate change, overgrazing, and fuelwood harvesting. This study evaluates the effectiveness of various pre-sowing treatments—sulfuric acid soaking and tap and hot water soaking—on breaking seed dormancy to enhance germination in nine Acacia species native to the Al-Baha region of Saudi Arabia. The key germination indicators assessed were the mean germination time (MGT), germination percentage (GP), and germination index (GI). Sulfuric acid treatments for 10–15 min reduced the MGT and increased the GP for A. etbaica, A. hamoulosa, and A. tortilis, while A. origena responded best to 1 min of hot water soaking. Conversely, A. asak, A. ehrenbergiana, and A. johnwoodii showed little to no germination improvement with treatment and A. oerfota and A. gerrardii showed no germination improvement, indicating the need for alternative methods. These findings indicate that the seed germination requirements vary within Acacia spp. from the same geographic region and similar climatic conditions. Further work is required for five of the species tested to develop better seed germination techniques, given the potential utility of Acacia spp., in ecological restoration and sustainable land management in arid regions. Full article
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16 pages, 1413 KiB  
Article
Temperature and Watering Regime Interactions in Shaping Canola Reproductive Yield and Seed Quality
by Alyssa D. Babb and Mirwais M. Qaderi
Seeds 2025, 4(2), 21; https://doi.org/10.3390/seeds4020021 - 27 Apr 2025
Viewed by 369
Abstract
Crops are continually subjected to frequent and extreme changes in climate, such as high temperatures and soil water deficits. Many studies have shown the individual effects of these factors on plants, but their combined effects on reproductive growth and subsequent seed germinability have [...] Read more.
Crops are continually subjected to frequent and extreme changes in climate, such as high temperatures and soil water deficits. Many studies have shown the individual effects of these factors on plants, but their combined effects on reproductive growth and subsequent seed germinability have received little attention. In this study, we used canola (Brassica napus) plants and grew them through their lifecycle under two temperature regimes (20/10 °C and 24/14 °C, 16 h light/8 h dark) in controlled-environment growth chambers. Half of the plants were watered to field capacity (well-watered) and the other half at wilting point (water-stressed). During the reproductive stage, the flower, silique, and seed traits were measured. Higher temperatures decreased the petal width by 1.17 times but increased petal anthocyanins by 1.03 times. The water deficit decreased the silique length and total seed number by 1.21 and 1.32 times, respectively, but increased nectar sugar concentration by 1.28 times. The total volume of nectar was affected by the interaction of temperature and water. The nectar volume was lowest in the water-stressed plants under higher temperatures (2.66 ± 0.29 µL per flower) but highest in the well-watered plants under the same temperature regime (5.73 ± 0.37 µL per flower). In conclusion, the combined effects of temperature and water were less pronounced than the individual effects of these factors on canola reproductive yield. Full article
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22 pages, 22089 KiB  
Article
Development of a Monitoring Plan for the Accidental Dispersal of Genetically Modified Oilseed Rape in Italy
by Valentina Rastelli, Valeria Giovannelli, Giovanni Staiano, Pietro Massimiliano Bianco, Alfonso Sergio and Matteo Lener
Seeds 2025, 4(2), 20; https://doi.org/10.3390/seeds4020020 - 17 Apr 2025
Viewed by 351
Abstract
This paper presents a pilot project conducted by ISPRA and ARPA Campania to develop a monitoring protocol to detect the presence of genetically modified (GM) oilseed rape (Brassica napus) plants resulting from accidental seed dispersal during transportation from entry points to [...] Read more.
This paper presents a pilot project conducted by ISPRA and ARPA Campania to develop a monitoring protocol to detect the presence of genetically modified (GM) oilseed rape (Brassica napus) plants resulting from accidental seed dispersal during transportation from entry points to storage and processing facilities; the project has been implemented in Italy’s Campania region. The unintentional dispersal of GM oilseed rape seeds and the potential establishment of feral populations have been identified as environmental concerns in various countries, even when GM oilseed rape is imported solely for processing and not for cultivation. The project activities were designed, taking into account the characteristics of the Italian environment and infrastructures. Multiple sampling campaigns were conducted in autumn 2018, spring 2019, and autumn 2019 to validate the selected transects and assess the presence of Brassicaceae species, with a particular focus on oilseed rape. These efforts involved direct monitoring and sample collection along transport routes from the port of Salerno to seed companies in the provinces of Benevento and Caserta. Field observations and import data revealed a decrease in oilseed rape movement at the port of Salerno in the years preceding the survey, while seed companies near Benevento remained active sites for white mustard (Sinapis alba). The presence of S. alba and the simultaneous occurrence of oilseed rape and Raphanus raphanistrum—a species with high hybridization potential—support the hypothesis that seed companies may act as hotspots for accidental seed dispersal and that potential interspecific gene flow can occur. The study also validated the adopted sampling and molecular analysis methods, including DNA extraction and PCR, for the detection of the Cruciferin A (CruA) gene in all Brassica species collected. These findings highlight the need to strengthen post-marketing monitoring plans, even when GM rapeseed is imported solely for processing, to mitigate the potential risks associated with unintended gene flow. Full article
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33 pages, 7765 KiB  
Article
Bayesian Morphometric Analysis for Archaeological Seed Identification: Phoenix (Arecaceae) Palms from the Canary Islands (Spain)
by Diego Rivera, Manuel Martínez-Rico, Jacob Morales, Francisco Alcaraz, Javier Valera, Dennis Johnson, Pedro A. Sosa, Javier Abellán, Jose Antonio Palazón, Diego José Rivera-Obón, Emilio Laguna and Concepción Obón
Seeds 2025, 4(2), 19; https://doi.org/10.3390/seeds4020019 - 3 Apr 2025
Viewed by 520
Abstract
The taxonomic complexity of Phoenix palms in the Canary Islands, where multiple morphotypes representing at least four taxa currently exist, presents significant challenges for archaeobotanical identification. We developed a Bayesian probabilistic framework to identify archaeological Phoenix seeds within the context of genus-wide morphological [...] Read more.
The taxonomic complexity of Phoenix palms in the Canary Islands, where multiple morphotypes representing at least four taxa currently exist, presents significant challenges for archaeobotanical identification. We developed a Bayesian probabilistic framework to identify archaeological Phoenix seeds within the context of genus-wide morphological diversity. Our analysis incorporated thousands of specimens including modern reference collections, archaeological materials from pre-Hispanic sites in Gran Canaria and La Gomera (3–16th centuries CE), and fossil remains. We recorded quantitative measurements and qualitative characteristics for each specimen. To understand taphonomic effects, we conducted experimental carbonization of modern P. canariensis seeds and documented the resulting morphological alterations. We performed a hierarchical cluster analysis using Ward’s minimum variance method and calculated taxonomic assignment probabilities for archaeological specimens using Bayesian inference, where likelihood was derived from taxon proportions within assigned clusters. The results indicated a high probability (0.69–1.00) that the archaeological specimens belong to P. canariensis var. canariensis, with no evidence for P. dactylifera presence. These findings provide critical insights into pre-Hispanic exploitation of Phoenix palms, particularly the endemic P. canariensis, which served as a vital resource, providing food, fiber, and construction materials. Our methodological approach offers a robust framework for addressing taxonomic uncertainty in archaeobotanical research while enhancing understanding of historical palm biogeography and resource use patterns in the Canary Islands. Full article
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14 pages, 1258 KiB  
Article
Potential Use of Herbicide Seed Safener and Pre-Emergent Residual Herbicides When Establishing Tropical Perennial Grasses—A Preliminary Study
by Suzanne P. Boschma, Hugh W. McDouall and Jonathan W. McLachlan
Seeds 2025, 4(2), 18; https://doi.org/10.3390/seeds4020018 - 2 Apr 2025
Viewed by 426
Abstract
Annual grass weeds can provide significant competition to an establishing sown tropical perennial grass pasture. At least two years of grass weed control prior to sowing is required to reduce the weed seed bank. Pre-emergent herbicides used in summer cereals, such as atrazine [...] Read more.
Annual grass weeds can provide significant competition to an establishing sown tropical perennial grass pasture. At least two years of grass weed control prior to sowing is required to reduce the weed seed bank. Pre-emergent herbicides used in summer cereals, such as atrazine or s-metolachlor with metcamifen seed safener, may reduce this preparation time. Two controlled-environment experiments were conducted to assess the potential for these pre-emergent herbicides to be used with several tropical perennial grasses. Experiment 1 tested the effect of metcamifen (400 g L−1 a.i. at 0–2× label rate) on the emergence and vigor of Chloris gayana, Dichanthium aristatum, Digitaria eriantha and Panicum coloratum, with Sorghum bicolor as the control. Experiment 2 tested the effect of s-metolachlor (960 g ha−1 a.i.) with metcamifen-treated or untreated seed, and atrazine (1800 g ha−1 a.i.) on the emergence and early growth of the grasses. Metcamifen did not inhibit emergence or vigor of the grasses. Without metcamifen seed treatment, s-metolachlor reduced the growth of the tropical perennial grasses by 47–100%, while it had no such effect on S. bicolor. In contrast, there was no effect of atrazine on shoot yields of the grasses, nor of s-metolachlor when D. aristatum, D. eriantha and P. coloratum seed had been treated with metcamifen. The collective results indicate that the herbicide safener metcamifen does not reduce the viability of tropical perennial grass seed and provides some protection against s-metolachlor, albeit not complete protection at the rates used in our study. Atrazine did not affect emergence or early growth of the grasses. Full article
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17 pages, 5334 KiB  
Article
Biostimulant Effect and Antioxidant Responses of Carrot Extract and the Viability of Rice Seeds Under Salt Stress
by Sheila Bigolin Teixeira, Stefânia Nunes Pires, Caroline Hernke Thiel, Cristiane Deuner, Diogo da Silva Moura, Natalia da Silva Garcia, Filipe Selau Carlos, Fernanda Reolon de Souza, Te Ming Tseng and Sidnei Deuner
Seeds 2025, 4(2), 17; https://doi.org/10.3390/seeds4020017 - 27 Mar 2025
Viewed by 374
Abstract
Bioactive compounds in plants, such as carrots, have been widely used for their benefits. In agriculture, their potential as biostimulants still needs to be investigated, especially for their possible antioxidant action in plants subjected to abiotic stresses, such as salinity. This work aimed [...] Read more.
Bioactive compounds in plants, such as carrots, have been widely used for their benefits. In agriculture, their potential as biostimulants still needs to be investigated, especially for their possible antioxidant action in plants subjected to abiotic stresses, such as salinity. This work aimed to evaluate the elicitor potential of carrot extract in alleviating salt stress in rice plants. This study aimed to evaluate the elicitor potential of carrot extract in alleviating saline stress in the rice cultivars BRS Querência and BRS 358. Aqueous extracts of carrot roots at concentrations of 0% (water), 25%, 50%, and 100% were used to soak rice seeds for 48 h, which were then subjected to different concentrations of NaCl (0, 25, 75, and 150 mM). To determine the effect of carrot extract as an elicitor under saline stress conditions, the following tests were conducted: germination, seedling length, dry mass, and oxidative stress through the activity of antioxidant enzymes, superoxide dismutase (SOD), ascorbate peroxidase (APX), catalase (CAT), peroxide content, and lipid peroxidation (hydrogen peroxide H2O2 and malonaldehyde MDA). Carrot extract increased the germination rate and maintained germination even under increased salinity rates in both cultivars. The application of 25 mM NaCl also boosted germination rates, followed by a significant decrease due to increased salinity rates. Shoot and root lengths and dry mass parameters showed a linear decrease in response to increasing NaCl concentrations. The activities of superoxide dismutase (SOD), ascorbate peroxidase (APx), and catalase (CAT) enzymes tended to decrease as the concentration of carrot extract increased, whereas the opposite was observed with NaCl application. Based on the combined analysis of the evaluated parameters, carrot extract application under the tested conditions was efficient in mitigating oxidative stress caused by high salinity conditions. Full article
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