Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae)
Abstract
:1. Introduction
History of Trichomycterus Intrageneric Classification
2. Materials and Methods
2.1. Comparative Osteology
2.2. DNA Sequences
2.3. Phylogenetic Analyses
2.4. Taxonomic Accounts
3. Results
3.1. Comparative Osteology and Phylogeny
3.2. Taxonomic Accounts
3.2.1. Megacambeva, New Subgenus
LSID: urn:lsid:zoobank.org:act:DD5D2BBB-A0E2-4D6F-96F1-229A811ADCE7
3.2.2. Paracambeva, New Subgenus
LSID: urn:lsid:zoobank.org:act:F5037571-D95D-4091-880B-9E598AF9ED9F
3.2.3. Subgenus Trichomycterus Valenciennes 1832
3.2.4. Psammocambeva, New Subgenus
LSID: urn:lsid:zoobank.org:act:4ED967A8-D2DB-43F1-9918-6A3384652165
3.2.5. Humboldtglanis, New Subgenus
LSID: urn:lsid:zoobank.org:act:09886ED2-C1BC-4A84-8824-07E6EEA8B510
3.2.6. Cryptocambeva, New Subgenus
LSID: urn:lsid:zoobank.org:act:E0BE3FF5-ABAE-4881-9875-5FA5C23FE2C4
4. Discussion
4.1. Phylogeny
4.2. Morphological Diversity of Osteological Structures
4.3. CST-Clade and Trichomycterus s.s. Diagnosis
5. Conclusions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Appendix A
Appendix B
Species | COI | CYTB | MYH6 | RAG2 |
---|---|---|---|---|
Nematogenys inermis | KY857952 | ––––– | KY858107 | KY858182 |
Copionodon pecten | KY857929 | ––––– | KY858084 | KY858169 |
Trichogenes longipinnis | MK123682 | MK123704 | MF431104 | MF431117 |
Microcambeva ribeirae | MN385807 | ––––– | MN385819 | MN385832 |
Listrura tetraradiata | JQ231083 | JQ231088 | MN385814 | MN385826 |
Eremophilus mutisii | KY857931 | ––––– | KY858086 | KY858171 |
‘Trichomycterus’ punctulatus | KY857983 | ––––– | KY858134 | KY858203 |
Bullockia maldonadoi | KY857926 | FJ772237 | KY858081 | KY858166 |
Hatcheria areolata | KY857964 | FJ772214 | ––––– | KY858188 |
Ituglanis boitata | MK123684 | MK123706 | MF431105 | MK123758 |
Scleronema minutum | MK123685 | MK123707 | MK123735 | MK123759 |
Scleronema cf. guapa | MK123687 | MK123709 | MF431107 | MF431118 |
Scleronema cf. ibirapuita | MK123688 | MK123710 | MK123737 | MK123761 |
Scleronema macanuda | MK123686 | MK123708 | MK123736 | MK123760 |
Cambeva variegata | KY857991 | KY858060 | ––––– | KY858211 |
Cambeva brachykechenos | MN995669 | MK123711 | MF431108 | ––––– |
Cambeva diatropoporos | KY857996 | KY858065 | KY858147 | KY858213 |
Cambeva cubataonis | MK123689 | MK123713 | MK123740 | MN385820 |
Cambeva davisi | KR140345 | MK123714 | MK123741 | MK123762 |
Cambeva castroi | ––––– | MK123712 | MK123739 | ––––– |
Cambeva zonata | KY857986 | KY858053 | KY858137 | ––––– |
Trichomycterus itatiayae | KY857977 | KY858046 | KY858128 | KY858198 |
Trichomycterus septemradiatus | MK123700 | MK123729 | MK123755 | MW196781 |
Trichomycterus pauciradiatus | MT941796 | MT941833 | MW196769 | MW196782 |
Trichomycterus piratymbara | KY857970 | KY858040 | KY858121 | KY858194 |
Trichomycterus reinhardti | MK123698 | MK123727 | MF431106 | MF431119 |
Trichomycterus anaisae | MT941782 | MT941820 | ––––– | ––––– |
Trichomycterus sainthilairei | MT941815 | MT941853 | ––––– | ––––– |
Trichomycterus luetkeni | MT941793 | MT941831 | KY858148 | KY858214 |
Trichomycterus ingaiensis | MT941790 | MT941829 | ––––– | ––––– |
Trichomycterus funebris | MT941785 | MT941823 | KY858121 | KY858194 |
Trichomycterus humboldti | MT941787 | MT941824 | ––––– | ––––– |
Trichomycterus giganteus | MK123693 | MK123720 | MK123746 | MT446426 |
Trichomycterus nigricans | MN813005 | MK123723 | MK123750 | MK123765 |
Trichomycterus caipora | MN813008 | MN813000 | MN812996 | MN812992 |
Trichomycterus santaeritae | MN813009 | MN813001 | MN812997 | MN812993 |
Trichomycterus immaculatus | MK123694 | MK144348 | MK123747 | MF431120 |
Trichomycterus nigroauratus | MK123696 | MK123724 | MK123751 | MK123766 |
Trichomycterus maculosus | MN813010 | MN813002 | MN812998 | MN812994 |
Trichomycterus quintus | MT299917 | MN812999 | MT305242 | ––––– |
Trichomycterus mimonha | MW196749 | MW196758 | MW196770 | MW196783 |
Trichomycterus fuliginosus | MW196750 | MW196759 | MW196771 | MW196784 |
Trichomycterus brunoi | MW196751 | MW196760 | MW196772 | MW196785 |
Trichomycterus mirissumba | MW196752 | MW196761 | MW196773 | MW196786 |
Trichomycterus pirabitira | KY857982 | KY858051 | KY858133 | ––––– |
Trichomycterus macrotrichopterus | MW196753 | MW196762 | MW196774 | MW196787 |
Trichomycterus brasiliensis | MK123691 | MK123717 | MK123744 | MK123763 |
Trichomycterus candidus | MK123692 | MK123718 | MK123745 | MW196788 |
Trichomycterus potschi | ––––– | MW196763 | MW196775 | MW196789 |
Trichomycterus claudiae | MW196754 | MW196764 | MW196776 | MW196790 |
Trichomycterus novalimensis | MW196755 | MW196765 | MW196777 | MW196791 |
Trichomycterus rubiginosus | MK123699 | MK123728 | MK123754 | MK123767 |
Trichomycterus albinotatus | MN813007 | MK123716 | MK123743 | MN812990 |
Trichomycterus vitalbrazili | MT435137 | MK748279 | MK748280 | MT446428 |
Trichomycterus travassosi | MK123701 | MK123730 | MK123757 | ––––– |
Trichomycterus caudofasciatus | MN812995 | MK123719 | MK123719 | MK123764 |
Trichomycterus jacupiranga | MK123702 | MK123731 | MK123757 | ––––– |
Trichomycterus pantherinus | MK123697 | MK123725 | MK123752 | MN812989 |
Trichomycterus auroguttatus | MT435135 | MT436452 | MT436450 | ––––– |
Trichomycterus alternatus | MK123690 | MK123715 | MK123742 | MN812991 |
Trichomycterus melanopygus | KY857976 | KY858045 | KY858127 | KY858197 |
Trichomycterus pradensis | MN813003 | MK123726 | MK123753 | MN812988 |
Trichomycterus tete | ––––– | MH620991 | ––––– | ––––– |
Trichomycterus mimosensis | ––––– | MH621150 | ––––– | ––––– |
Trichomycterus longibarbatus | ––––– | MH621258 | ––––– | ––––– |
Appendix C
- Autopalatine, dorsal surface, lateral portion, long longitudinal ridge: (0) absent; (1) present.
- Autopalatine, dorsal surface, latero-middle portion, short longitudinal ridge: (0) absent; (1) present.
- Autopalatine, postero-lateral process, development: (0) well-developed; (1) rudimentary.
- Autopalatine, postero-lateral process, direction: (0) postero-lateral; (1) posterior; (2) lateral.
- Autopalatine, postero-lateral process, length relative to autopalatine longitudinal length excluding postero-lateral process: (0) distinctively shorter; (1) nearly equal or slightly longer.
- Autopalatine in specimens above 45 mm SL, medial margin, shape: (0) concave, sometimes nearly straight; (1) convex; (2) with deep concavity, posteriorly followed by broad convexity.
- Autopalatine, articular facet for lateral ethmoid, ventral flap, shape: (0) small or rudimentary; (1) long.
- Autopalatine, dorsal surface, articular facet for the lateral ethmoid, prominent ridge terminating in process connected to sesamoid supraorbital: (0) absent; (1) present.
- Autopalatine, dorsal surface, articular facet for the lateral ethmoid, robust comma-shaped support: (0) absent; (1) present.
- Metapterygoid, posterior portion, expansion: (0) absent; (1) present.
- Metapterygoid, postero-ventral margin, deep concavity accommodating dorsal expansion of the antero-dorsal process of the quadrate: (0) absent; (1) present.
- Hyomandibula, anterior-outgrowth, shape: (0) deep; (1) shallow.
- Hyomandibula, anterior-outgrowth, dorsal margin, shape: (0) slightly curved, sometimes with weak dorsal concavity; (1) nearly straight and horizontal, with deep U-shaped concavity; (2) step anterior and posterior portions converging to pronounced V-shaped concavity reaching central outgrowth; (3) deep concavity reaching ventral outgrowth.
- Opercle, anterior odontodes, arrangement: (0) transversal; (1) diagonal.
- Opercle and interopercle, largest and internal-most odontodes, distal portion, shape: (0) straight to slightly curved; (1) strongly curved, its tip forming an angle of about 90° with odontode main axis.
- Interopercle, anterior portion, distinctive anterior expansion: (0) absent; (1) present.
- Interopercle, dorsal process, position relative to anterior margin of odontode patch: (0) distant; (1) close.
- Interopercle, dorsal process, anterior margin, shape: (0) slightly concave; (1) prominent V-shaped notch.
- Preopercle, ventral flap, extent relative to ventral bone limit: (0) slightly extending beyond it; (1) expanding ventrally beyond it.
- Maxilla, largest length relative premaxilla largest length: (0) shorter; (1) longer.
- Maxilla, shape: (0) slightly curved; (1) somewhat folded; (2) nearly straight.
- Maxilla, postero-middle process, shape: (0) moderate, slightly projecting beyond bone profile; (1) large, forming pronounced expansion.
- Antorbital, association with anterior segment of the latero-sensory infraorbital canal: (0) associated; (1) separated.
- Sesamoid supraorbital, distinctive robust lateral process: (0) absent; (1) present.
- Mesethmoid, lateral margin, ventral fold: (0) absent; (1) present.
- Lateral ethmoid, articular facet for the autopalatine, folded laminar expansion: (0) absent; (1) present.
- Lateral ethmoid, antero-dorsal extremity, direction: (0) anterior; (1) lateral; (2) medial.
- Lateral ethmoid, medial margin, proximity relative to its paired homologous: (0) in contact; (1) separate.
- Lateral ethmoid, lateral margin, area close to sesamoid supraorbital, lateral projection: (0) absent; (1) present.
- Lateral ethmoid, lateral margin, prominent trapezoidal process: (0) absent; (1) present.
- Lateral ethmoid, lateral margin, widening to form distinct wall limiting fossa aperture: (0) absent; (1) present.
- Sphenotic-prootic-pterosphenoid complex, lateral process, extent relative to main neurocranium body limit: (0) short, slightly extending beyond it; (1) long, strongly projecting beyond it.
- Pterotic, lateral process, extremity, shape and extent relative to limit of lateral neighbouring bones: (0) truncate, not projecting beyond; (1) rounded, projecting beyond.
- Epioccipital, posterior margin, sharp process posteriorly directed: (0) absent; (1) present.
- Frontal, anterior cranial fontanel, shape: (0) well-developed orifice; (1) minute aperture.
- First free vertebra, parapophysis, branching: (0) unbranched; (1) branched.
- Second free vertebra, parapophysis, direction: (0) lateral; (1) posterolateral.
- Second free vertebra, parapophysis, general shape: (0) robust; (1) slender.
- Second free vertebra, parapophysis, antero-distal portion, expansion: (0) absent; (1) present.
- Second free vertebra, parapophysis, posterior margin, small notch: (0) absent; (1) present.
- Second free vertebra, parapophysis, postero-distal portion, expansion: (0) absent; (1) present.
- Third free vertebra, parapophysis, direction: (0) postero-lateral; (1) posterior.
- Third free vertebra, parapophysis, shape: (0) nearly straight; (1) posteriorly curved.
- Weberian capsule, shape: (0) pear-like, abruptly narrowing laterally; (1) slender, subtly narrowing laterally.
- Scapulo-coracoid, supra-lateral process, shape: (0) needle-shaped; (1) tree-shaped.
- Posttemporo-supracleithrum, size and space around it: (0) large, occupying most space among neighbouring bones; (1) small, surrounded by large space separating from neighbouring bones.
- Pelvic bone, development: (0) well-developed; (1) poorly-developed.
- Pelvic bone, general shape: (0) compact; (1) elongated.
- Pelvic bone, posterior process, development: (0) well-developed; (1) rudimentary. Remarks: taxa with poorly developed pelvic bone or lacking a pelvic bone were coded as (?).
- Pelvic bone, anterior processes, basal region: (0) broad; (1) narrow. Remarks: taxa lacking a pelvic bone were coded as (?).
- Pelvic bone, anterior processes, number: (0) two; (1) three. Remarks: taxa lacking a pelvic bone were coded as (?).
- Pelvic bone, postero-medial portion, small process close to cartilage supporting fin rays: (0) absent; (1) present.
Appendix D
Taxon | Characters 1–52 |
---|---|
Nematogenys inermis | 00???0?0??0?????0??0?00?00000???0?0?000000000?000000 |
Copionodon pecten | 00???0?0??0?????00?0?00?00000???0000000000000?000000 |
Trichogenes longipinnis | 00???0?0??0?????00?0?00?00000???0000000000000?00000? |
Microcambeva ribeirae | 000000?00?????0?0?0100000000000000?0100000000?000000 |
Listrura tetraradiata | 001??0?00?????0?0?0100000000000000?0100000000??????? |
Eremophilus mutisii | 00000000000000000000000000001?000000000000000??????? |
Trichomycterus punctulatus | 00000000000000000000000000000000?0000000000000000000 |
Bullockia maldonadoi | 0000100000000000001100?00000000000000000000000000000 |
Trichomycterus areolatus | 0000100000000000001000000000000000000000000000000000 |
Ituglanis boitata | 0000000000000000000000000000000000?00000001000000000 |
Scleronema minutum | 0000000000000000100100?00000000000011000010000000000 |
Scleronema cf guapa | 0000000000000000100100?00000000000011000010000000000 |
Scleronema cf ibirapuita | 0000000000000000100100?00000000000011000010000000000 |
Scleronema macanuda | 0000000000000000100100?00000000000011000010000000000 |
Cambeva variegata | 0000000000000000100000?00000000000011000010000000000 |
Cambeva brachychenos | 0000000000000000100000?00000000000011000010000000000 |
Cambeva diatropoporos | 001?000000000000100000000000000000011000010000000000 |
Cambeva cubataonis | 0000000000000000100000?000000000?0011000010000000000 |
Cambeva davisi | 0000000000000000100000?000000000?0011000010000000000 |
Cambeva castroi | 0000000000000000100000?000000000?0011000010000000000 |
Cambeva zonata | 0000000000000000100000?000000000?0011000010000000000 |
Trichomycterus giganteus | 0101000100003010000000000000010000001000000110000010 |
Trichomycterus itatiayae | 001?000000101000100000?00020000000001100000000000001 |
Trichomycterus septemradiatus | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus pauciradiatus | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus piratymbara | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus reinhardti | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus anaisae | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus funebris | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus humboldti | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus luetkeni | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus ingaiensis | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus sainthilairei | 000000100000000010000010000000000000110000000010?000 |
Trichomycterus nigricans | 0000000001000000000101000010000100001010001000000000 |
Trichomycterus caipora | 0000000001000000000101000010000100001010001000000000 |
Trichomycterus santaeritae | 0000000001000000000101000010000100001000001000000000 |
Trichomycterus immaculatus | 0000000001000000000001000010000100001010001000000000 |
Trichomycterus nigroauratus | 0000000001000000000000000110000100001010001000010000 |
Trichomycterus maculosus | 0000000001000000000000000110000100001010001000010000 |
Trichomycterus quintus | 0000000001000000000000000110000100001010000000010000 |
Trichomycterus mimonha | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus fuliginosus | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus brunoi | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus mirissumba | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus pirabitira | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus macrotrichopterus | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus brasiliensis | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus candidus | 100000000000010000000000100110001000100100000100???? |
Trichomycterus potschi | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus claudiae | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus novalimensis | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus rubiginosus | 1000000000000100000000001001100010001001000001001100 |
Trichomycterus albinotatus | 1000010000002100000000001001100001001001000000001000 |
Trichomycterus vitalbrazili | 1000010000002100000000001001100001001001000000001000 |
Trichomycterus mimosensis | 0000000000000000000100000000001000101000000000000000 |
Trichomycterus travassosi | 0000000000000000000100000000001000101000000000000000 |
Trichomycterus caudofasciatus | 0000000000000000000100000000001000101000000000000000 |
Trichomycterus cf jacupiranga | 0000000000000000000100010000001000101000000000000000 |
Trichomycterus pantherinus | 0000000000000000000100010000001000101000000000000000 |
Trichomycterus longibarbatus | 0002000000000000010120000000001000001000000000000000 |
Trichomycterus auroguttatus | 0000120010000000010110000000001000101000100000000000 |
Trichomycterus alternatus | 0000100000000000010110000000001000101000100000000000 |
Trichomycterus melanopygus | 0000000000010000001100000000000000001000000000000000 |
Trichomycterus pradensis | 0000000000010001001100000000000000001000000000000000 |
Trichomycterus tete | 0000000000010000001100000000000000001000000000000000 |
Appendix E
Partition | Base Pairs | Evolutionary Model |
---|---|---|
COI 1st | 174 | TNe+G4 |
COI 2nd | 174 | F81+F+I+G4 |
COI 3rd | 174 | TIM+F+G4 |
CYTB 1st | 363 | K2P+I+G4 |
CYTB 2nd | 363 | TN+F+I |
CYTB 3rd | 362 | TIM2+F+I+G4 |
MYH6 1st | 181 | JC+I+G4 |
MYH6 2nd | 181 | HKY+F+I+G4 |
MYH6 3rd | 181 | K2P+G4 |
RAG2 1st | 274 | K3P+I |
RAG2 2nd | 274 | TVMe+G4 |
RAG2 3rd | 273 | K2P+G4 |
Osteology | 52 | JC+I+G4 |
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Node | ML | MP | ||
---|---|---|---|---|
SH-aLRT | aBayes | UFBoot | Bootstrap | |
1 | - | - | - | 100 |
2 | 97.4 | 1 | 100 | 97 |
3 | 100 | 1 | 100 | 99 |
4 (Microcambevinae) | 100 | 1 | 100 | 99 |
5 (Trichomycterinae) | 98.4 | 1 | 100 | 98 |
6 | 84.5 | 1 | 74 | - |
7 | 85.8 | 1 | 76 | - |
8 | 99.6 | 1 | 100 | 78 |
9 | 100 | 1 | 100 | 100 |
10 (CST-clade) | 99.8 | 1 | 100 | 95 |
11 (Cambeva + Scleronema) | 99.9 | 1 | 100 | 99 |
12 (Scleronema) | 100 | 1 | 100 | 100 |
13 | 99.9 | 1 | 100 | 100 |
14 | 98.6 | 1 | 100 | 100 |
15 (Cambeva) | 89.0 | 1 | 95 | 84 |
16 | 66.7 | - | 79 | - |
17 | 96.6 | 1 | 95 | - |
18 | 99.1 | 1 | 100 | 83 |
19 | 99.4 | 1 | 100 | 100 |
20 | 73.3 | 0.8 | 92 | - |
21 (Trichomycterus) | 85.1 | 1 | 92 | 89 |
22 | 78.6 | 0.8 | 82 | - |
23 (Paracambeva) | 100 | 1 | 100 | 100 |
24 (T. reinhardti group) | 97.3 | 1 | 99 | 99 |
25 | 98.8 | 1 | 100 | 97 |
26 | 96.9 | 1 | 97 | 92 |
27 | - | 1 | - | - |
28 | 100 | 1 | 100 | 100 |
29 | 100 | 1 | 100 | 99 |
30 | 83.7 | 0.9 | 97 | 99 |
31 | 83.1 | 1 | 91 | - |
32 (sg. Trichomycterus) | 100 | 1 | 100 | 100 |
33 (T. nigroauratus group) | 100 | 1 | 100 | 100 |
34 (T. nigricans group) | 86.2 | 1 | 96 | 72 |
35 | 98.3 | 1 | 100 | 94 |
36 | 97.6 | 1 | 100 | 100 |
37 | 91 | 1 | 93 | - |
38 (Psammocambeva) | 98.9 | 1 | 100 | 89 |
39 (T. pradensis group) | 50.6 | 0.7 | 80 | - |
40 | 87.1 | 1 | 96 | - |
41 (T. travassosi group) | 100 | 1 | 100 | 94 |
42 | - | - | - | - |
43 | 92.3 | 1 | 98 | - |
44 | 85.9 | 1 | 87 | - |
45 | 92.1 | 1 | 97 | - |
46 | - | - | 85 | - |
47 | 99.2 | 1 | 100 | 95 |
48 (Humboldtglanis) | 99.4 | 1 | 100 | 100 |
49 (Cryptocambeva) | 100 | 1 | 100 | 100 |
50 | 92.4 | 1 | 99 | 55 |
51 | 96.2 | 1 | 99 | 58 |
52 | 96 | 1 | 99 | 92 |
53 | 89.6 | 1 | 97 | 97 |
54 | 73 | - | 95 | - |
55 | 100 | 1 | 100 | 100 |
56 | 63.6 | - | 94 | 92 |
57 | 92.6 | 1 | 99 | - |
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Costa, W.J.E.M. Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae). Taxonomy 2021, 1, 160-191. https://doi.org/10.3390/taxonomy1020013
Costa WJEM. Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae). Taxonomy. 2021; 1(2):160-191. https://doi.org/10.3390/taxonomy1020013
Chicago/Turabian StyleCosta, Wilson J. E. M. 2021. "Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae)" Taxonomy 1, no. 2: 160-191. https://doi.org/10.3390/taxonomy1020013
APA StyleCosta, W. J. E. M. (2021). Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae). Taxonomy, 1(2), 160-191. https://doi.org/10.3390/taxonomy1020013