New and Interesting Pine-Associated Hyphomycetes from China
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sample Collection, Morphological Examination and Isolation
2.2. DNA Extraction, PCR Amplification and Sequencing
2.3. Phylogenetic Analyses
3. Results
3.1. Phylogenetic Analyses
3.2. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Locus | PCR Primers | PCR: Thermal Cycles | References |
---|---|---|---|
ITS | ITS9mun or ITS5/ ITS4_KYO1 or ITS4 | (94 °C: 30 s, 56 °C: 30 s, 72 °C: 30 s) × 35 cycles | [44,45] |
LSU | LR0R/LR5 | (94 °C: 30 s, 56 °C: 30 s, 72 °C: 1 min) × 35 cycles | [46,47] |
SSU | PNS1/ NS41 | (94 °C: 30 s, 56 °C: 30 s, 72 °C: 1 min) × 35 cycles | [48] |
TEF1 | EF1-983/ EF1-2218R | (94 °C: 30 s, 58 °C: 30 s, 72 °C: 1 min) × 35 cycles | [49,50] |
RPB2 | dRPB2-5f/dRPB2-7r | (94 °C: 30 s, 58 °C: 30 s, 72 °C: 1 min) × 35 cycles | [51] |
Species | Culture/Specimen No. | GenBank Accession Numbers | ||
---|---|---|---|---|
SSU | LSU | ITS | ||
Catenulostroma chromoblastomycosum | CBS 597.97 | GU214516 | EU019251 | AJ244260 |
C. corymbiae | CBS 133584 | – | KC005805 | KC005783 |
C. elginense | CBS 111030 | GU214517 | EU019252 | – |
C. hermanusense | CBS 128768 | – | JF499853 | JF499833 |
C. lignicola | CBS 130285 | – | NG_059023 | NR_154848 |
C. lignicola | FMR 11491 | – | KY853489 | KY853429 |
C. pini | UESTCC 24.0185 | PQ046106 | PQ038269 | PQ038262 |
C. protearum | CBS 125421 | – | KF902090 | MH863677 |
Teratosphaeria fibrillosa | CPC 1876 | – | GU214506 | EU019282 |
Species | Culture/Specimen No. | GenBank Accession Numbers | ||
---|---|---|---|---|
SSU | LSU | ITS | ||
Kirschsteiniothelia acutispora | MFLU 21-0127 | ON980754 | ON980758 | OP120780 |
K. aquatica | MFLUCC 16-1685 | MH182618 | MH182594 | MH182587 |
K. arasbaranica | IRAN 2509C | KX621988 | KX621987 | KX621986 |
K. arasbaranica | IRAN 2508C | KX621985 | KX621984 | KX621983 |
K. atra | CBS 109.53 | AY016344 | AY016361 | – |
K. atra | MFLUCC 16-1104 | MH182615 | MH182589 | MH182583 |
K. atra | MFLUCC 15-0424 | KU500585 | KU500578 | KU500571 |
K. cangshanensis | MFLUCC 16-1350 | – | MH182592 | MH182584 |
K. chiangmaiensis | MFLU 23-0358 | OR575475 | OR575474 | OR575473 |
K. crustaceum | MFLU 21-0129 | – | MW851854 | MW851849 |
K. dushanensis | GZCC 19-0415 | MW134610 | MW133830 | OP377845 |
K. ebriosa | CBS H-23379 | – | LT985885 | – |
K. emarceis | MFLU 10-0037 | – | NG_059454 | NR_138375 |
K. extensum | MFLU 21-0130 | – | MW851855 | MW851850 |
K. esperanzae | T. Raymundo 6581 | – | OQ880482 | OQ877253 |
K. fluminicola | MFLUCC 16-1263 | – | MH182588 | MH182582 |
K. guangdongensis | MHZU 22-0137 | – | OR164974 | OR164946 |
K. inthanonensis | MFLUCC 23-0277 | OR764784 | OR762781 | OR762773 |
K. longisporum | UESTCC 24.0190 | PQ046108 | PQ038273 | PQ038266 |
K. lignicola | MFLUCC 10-0036 | HQ441569 | HQ441568 | HQ441567 |
K. nabanheensis | HJAUP C2006 | OQ023037 | OQ023275 | OQ023274 |
K. nabanheensis | HJAUP C2004 | OQ023038 | OQ023273 | OQ023197 |
K. ramus | GZCC 23-0596 | – | OR091333 | NR_190260 |
K. phoenicis | MFLU 18-0153 | – | NG_064508 | NR_158532 |
K. phoenicis | MFLUCC 18-0216 | MG859979 | MG860484 | MG859978 |
K. puerensis | ZHKUCC 22-0272 | OP451021 | OP451018 | OP450978 |
K. puerensis | ZHKUCC 22-0271 | OP451020 | OP451017 | OP450977 |
K. rostrata | MFLUCC 15-0619 | KY697278 | KY697276 | KY697280 |
K. septemseptatum | MFLU 21-0126 | ON980752 | ON980757 | OP120779 |
K. saprophytica | MFLUCC 23-0275 | – | OR762783 | OR762774 |
K. saprophytica | MFLUCC 23-0276 | – | OR762782 | OR762775 |
K. spatiosum | MFLU 21-0128 | ON980753 | – | NR_187065 |
K. submersa | S-481 | MH182616 | MH182591 | – |
K. submersa | S-601 | – | MH182593 | MH182585 |
K. submersa | MFLUCC 15-0427 | KU500584 | KU500577 | KU500570 |
K. tectonae | MFLUCC 12-0050 | – | KU764707 | KU144916 |
K. tectonae | MFLUCC 13-0470 | – | – | KU144924 |
K. tectonae | MFLUCC 23-0271 | OR764782 | OR762779 | OR762771 |
K. tectonae | MFLUCC 23-0272 | OR764783 | OR762780 | OR762772 |
K. thailandica | MFLUCC 20-0116 | MT984280 | MT984443 | MT985633 |
K. thujina | JF13210 | KM982717 | KM982718 | KM982716 |
K. vinigena | CBS H-23378 | – | NG_075229 | – |
K. xishuangbannaensis | ZHKUCC 22-0221 | OP289565 | OP303182 | OP289563 |
K. xishuangbannaensis | ZHKUCC 22-0220 | OP289564 | OP303181 | OP289566 |
K. xishuangbannaensis | MFLUCC 23-0273 | OR764781 | OR762778 | OR762770 |
K. xishuangbannaensis | MFLUCC 23-0274 | OR764780 | OR762777 | OR762769 |
K. zizyphifolii | MFLUCC 23-0270 | OR764779 | OR762776 | OR762768 |
Tenuitholiascus porinoides | HMAS-L0139638 | MK352441 | MK206259 | – |
Species | Culture/Specimen No. | GenBank Accession Numbers | ||
---|---|---|---|---|
LSU | ITS | RPB2 | ||
Nigrograna obliqua | CBS 141477 | KX650560 | KX650560 | KX650580 |
Paradictyoarthrinium aquatica | MFLUCC 16-1116 | MG747495 | MG747496 | MG780231 |
P. diffractum | MFLUCC 13-0466 | KP744498 | KP744455 | KX437764 |
P. diffractum | MFLUCC 12-0557 | KP744497 | KP744454 | KX437765 |
P. diffractum | KUMCC 19-0111 | MN582756 | MN582741 | MN643158 |
P. diffractum | UESTCC 24.0187 | PQ038271 | PQ038264 | PQ050360 |
P. hydei | KUNCC 10440 | OQ146990 | OQ135179 | – |
P. hydei | KUMCC 19-0185 | – | MN582742 | MN643159 |
P. hydei | MFLUCC 17-2512 | MG747497 | MG747498 | MG780232 |
P. hydei | UESTCC 24.0188 | PQ038272 | PQ038265 | PQ050361 |
P. salsipludicola | MFLUCC 22-0054 | OR589801 | OR589800 | – |
P. tectonicola | MFLUCC 13-0465 | KP744500 | KP744456 | KX437763 |
P. tectonicola | MFLUCC 12-0556 | KP744499 | – | – |
Species | Culture/Specimen No. | GenBank Accession Numbers | |||
---|---|---|---|---|---|
LSU | ITS | RPB2 | TEF1 | ||
Junewangia thailandica | MFLU 15-2682 | MW287762 | – | – | – |
Sporidesmiella aquatica | DLUCC 0777 | MK849843 | MK828692 | – | MN194034 |
S. hyalosperma | DLUCC 1518 | MK849842 | MK828691 | MN124523 | MN194033 |
S. hyalosperma | KUMCC 15-0431 | MK849841 | MK828690 | MN124522 | MN194032 |
S. junci | CBS 149443 | NG_229048 | OP675893 | OP676106 | – |
S. juncicola | CPC 41075 | OK663757 | OK664718 | OK651165 | – |
S. juncicola | CPC 41109 | OK663758 | OK664719 | OK651166 | OK651188 |
S. lignicola | JAUCC 3436 | OK091615 | MZ613187 | OK323222 | OK323223 |
S. motuoensis | KUNCC 10425 | OR229720 | OP626348 | – | – |
S. motuoensis | KUNCC 10463 | OR229719 | OR286630 | – | – |
S. novae-zelandiae | DLUCC 0951 | MK849847 | MK828695 | MN124526 | MN194037 |
S. novae-zelandiae | DLUCC 1256 | MK849845 | MK828693 | MN124525 | MN194036 |
S. obovoidia | MFLUCC 17-2372 | MW287766 | MW286492 | – | – |
S. pini | CPC 40067 | OK663786 | OK664747 | OK651177 | – |
S. sichuanensis | HKAS136267 | PQ038270 | PQ038263 | PQ050359 | PQ050356 |
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© 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Tian, W.-H.; Jin, Y.; Liao, Y.-C.; Faraj, T.K.; Guo, X.-Y.; Maharachchikumbura, S.S.N. New and Interesting Pine-Associated Hyphomycetes from China. J. Fungi 2024, 10, 546. https://doi.org/10.3390/jof10080546
Tian W-H, Jin Y, Liao Y-C, Faraj TK, Guo X-Y, Maharachchikumbura SSN. New and Interesting Pine-Associated Hyphomycetes from China. Journal of Fungi. 2024; 10(8):546. https://doi.org/10.3390/jof10080546
Chicago/Turabian StyleTian, Wen-Hui, Yan Jin, Yue-Chi Liao, Turki Kh. Faraj, Xin-Yong Guo, and Sajeewa S. N. Maharachchikumbura. 2024. "New and Interesting Pine-Associated Hyphomycetes from China" Journal of Fungi 10, no. 8: 546. https://doi.org/10.3390/jof10080546