Four New Fungal Species in Forest Ecological System from Southwestern China
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection and Herbarium Specimen Preparation
2.2. Molecular Phylogeny
2.3. DNA Extraction and Sequencing
2.4. Phylogenetic Analyses
Species Name | Specimen No. | GenBank Accession No. | Country | References | |
---|---|---|---|---|---|
ITS | nLSU | ||||
Asterostroma bambusicola | He4132 | KY263865 | KY263871 | China | [42] |
A. bambusicola | He4128 | KY263864 | China | [42] | |
A. cervicolor | He4020 | KY263860 | KY263868 | China | [42] |
A. cervicolor | He2314 | KY263859 | KY263869 | China | [42] |
A. cervicolor | TMI:21362 | AB439560 | Japan | [17] | |
A. cervicolor | KHL9239 | AF506408 | AF506408 | Sweden | [41] |
A. laxum | EL33-99 | AF506410 | AF506410 | Sweden | [41] |
A. macrosporum | TMI:25696 | AB439544 | Japan | [17] | |
A. macrosporum | TMI:25697 | AB439545 | Japan | [17] | |
A. medium | HFRG_EJ220212_2_FRDBI 23891920 | OQ133615 | United Kingdom | Unpublished | |
A. medium | HFRG_EJ210127_2 FRDBI 18772203 | OL828779 | United Kingdom | Unpublished | |
A. muscicola | He20121104-1 | KY263862 | KY263872 | China | [42] |
A. muscicola | He4106 | KY263861 | KY263873 | China | [42] |
A. muscicola | TMI:25860 | AB439551 | Japan | [17] | |
A. vararioides | He4140 | KY263867 | KY263870 | China | [42] |
A. vararioides | He4136 | KY263866 | China | [42] | |
A. yunnanense | CLZhao 22781 * | OR048809 | OR506285 | China | Present study |
A. yunnanense | CLZhao 22846 | OR048810 | OR506287 | China | Present study |
A. yunnanense | CLZhao 22786 | OR048811 | OR506286 | China | Present study |
Baltazaria galactina | CBS 752.86 | MH862034 | MH873721 | France | [70] |
B. galactina | CBS:753.86 | MH862035 | MH873722 | France | [70] |
B. neogalactina | CBS 755.86 | MH862037 | MH873724 | France | [70] |
B. neogalactina | CBS:758.86 | MH862040 | MH873727 | France | [70] |
Bjerkandera adusta | HHB-12826-Sp | KP134983 | KP135198 | USA | [22] |
B. centroamericana | L13104sp | KY948791 | KY948855 | Costa Rica | [56] |
Confertobasidium olivaceoalbum | FP90196 | AF511648 | AF511648 | Sweden | [41] |
Crystallicutis serpens | HHB-15692-Sp | KP135031 | KP135200 | USA | [22] |
Dichostereum boidinii | He4410 | MH538315 | MH538331 | China | [70] |
D. boidinii | He5026 | MH538324 | MH538330 | China | [71] |
D. pallescens | CBS:718.81 | MH861456 | MH873198 | USA | [70] |
D. pallescens | CBS:719.81 | MH861457 | MH873199 | USA | [70] |
Gloeoporus dichrous | FP-151129 | KP135058 | USA | [22] | |
G. pannocinctus | L-15726-Sp | KP135060 | USA | [22] | |
Lachnocladium schweinfurthianum | KM49740 | MH260033 | MH260051 | United Kingdom | [65] |
Metulodontia nivea | NH13108 | AF506423 | AF506423 | Sweden | [41] |
M. artocreas | GHL-2016-Oct | MH204688 | MH204692 | USA | [72] |
Peniophora cinerea | He3725 | MK588769 | MK588809 | China | Unpublished |
P. cinerea | CBS:261.37 | MH855905 | MH867412 | Belgium | [70] |
P. incarnata | CBS 430.72 | MH860518 | MH872230 | Netherlands | [70] |
P. incarnata | NH10271 | AF506425 | AF506425 | Sweden | [41] |
P. quercina | CBS 407.50 | MH856687 | MH868204 | France | [70] |
P. quercina | CBS:410.50 | MH856690 | MH868207 | France | [70] |
Phaeophlebiopsis caribbeana | HHB-6990 | KP135415 | KP135243 | USA | [22] |
P. peniophoroides | FP-150577 | KP135417 | KP135273 | USA | [22] |
P. ravenelii | CBS:411.50 | MH856691 | MH868208 | France | [70] |
Phanerochaete burdsallii | He 2066 | MT235690 | MT248177 | USA | Unpublished |
P. aculeata | Wu 1809-278 | MZ422786 | MZ637178 | China | [25] |
P. aculeata | GC 1703-117 | MZ422785 | MZ63717 | China | [25] |
P. albida | WEI 18-365 | MZ422789 | MZ637180 | China | [25] |
P. albida | GC 1407-14 | MZ422788 | MZ637179 | China | [25] |
P. allantospora | KKN-111-Sp | KP135038 | KP135238 | USA | [22] |
P. allantospora | RLG-10478 | KP135039 | USA | [22] | |
P. alnea | K. H. Larsson 12054 | KX538924 | Norway | [73] | |
P. alnea voucher | K. H. Larsson 12054 | KX538924 | Norway | [73] | |
P. alpina | Wu 1308-61 | MZ422790 | MZ637182 | China | [25] |
P. alpina | Wu 1308-77 | MZ422791 | MZ637183 | China | [25] |
P. arizonica | RLG-10248-Sp | KP135170 | KP135239 | USA | [22] |
P. australis | He 6013 | MT235656 | MT248136 | China | [74] |
P. australis | HHB-7105-Sp | KP135081 | KP135240 | USA | [22] |
P. australosanguinea | MA:Fungi:91308 | MH233925 | MH233928 | Chile | [74] |
P. australosanguinea | MA:Fungi:91309 | MH233926 | MH233929 | Chile | [74] |
P. bambusicola | He 3606 | MT235657 | MT248137 | China | [25] |
P. bambusicola | Wu 0707-2 | MF399404 | MF399395 | China | [75] |
P. brunnea | He 4192 | MT235658 | MT248138 | China | [76] |
P. burdsallii | CFMR:RF9JR | KU668973 | USA | [27] | |
P. burtii | HHB-4618-Sp | KP135117 | KP135241 | USA | [22] |
P. burtii | FD-171 | KP135116 | USA | [22] | |
P. calotricha | Vanhanen382 | KP135107 | USA | [22] | |
P. canobrunnea | He 5726 | MT235659 | MT248139 | Sri Lanka | [75] |
P. canobrunnea | TNM:CHWC 1506-66 | LC412095 | LC412104 | China | [76] |
P. carnosa | He 5172 | MT235660 | MT248140 | China | [76] |
P. carnosa | HHB-9195 | KP135129 | KP135242 | USA | [22] |
P. chrysosporium | He 5778 | MT235661 | MT248141 | Sri Lanka | [76] |
P. chrysosporium | HHB-6251-Sp | KP135094 | KP135246 | USA | [22] |
P. citrinosanguinea | FP-105385-Sp | KP135100 | KP135234 | USA | [22] |
P. concrescens | He 4657 | MT235662 | MT248142 | China | [25] |
P. concrescens | H Spirin 7322 | KP994380 | KP994382 | Russia | [77] |
P. conifericola | OM8110 | KP135171 | Finland | [22] | |
P. crystallina | Chen 3823 | MZ422802 | MZ637188 | China | [25] |
P. crystallina | Chen 3576 | MZ422801 | China | [25] | |
P. cumulodentata | He 2995 | MT235664 | MT248144 | China | [74] |
P. cumulodentata | LE < RUS_:298935 | KP994359 | KP994386 | Russia | [77] |
P. cystidiata | He 4224 | MT235665 | MT248145 | China | [76] |
P. cystidiata | TNM:Wu 1708-326 | LC412097 | LC412100 | China | [78] |
P. daliensis | CLZhao F10107 | OP605506 | OP874696 | China | [27] |
P. daliensis | CLZhao F10088 | OP605505 | OP874695 | China | [27] |
P. ericina | HHB-2288 | KP135167 | KP135247 | USA | [22] |
P. ericina | He 4285 | MT235666 | MT248146 | China | [76] |
P. fusca | TNM:Wu 1409-163 | LC412099 | LC412106 | China | [78] |
P. guangdongensis | Wu 1809-348 | MZ422813 | MZ637199 | China | [25] |
P. guangdongensis | Wu 1809-319 | MZ422811 | MZ637197 | China | [25] |
P. hainanensis | He 3562 | MT235692 | MT248179 | China | [24] |
P. incarnata | He 20120728-1 | MT235669 | MT248149 | China | [76] |
P. incarnata | WEI 16-075 | MF399406 | MF399397 | China | [75] |
P. krikophora | HHB-5796 | KP135164 | KP135268 | USA | [22] |
P. laevis | He 20120917-8 | MT235670 | MT248150 | China | [76] |
P. laevis | HHB-15519 | KP135149 | KP135249 | USA | [22] |
P. leptocystidiata | He 5853 | MT235685 | MT248168 | China | [76] |
P. leptocystidiata | Dai 10468 | MT235684 | MT248167 | China | [76] |
P. livescens | He 5010 | MT235671 | MT248151 | China | [76] |
P. metuloidea | He 2766 | MT235682 | MT248164 | China | [76] |
P. minor | He 3988 | MT235686 | MT248170 | China | [76] |
P. parmastoi | He 4570 | MT235673 | MT248153 | China | [76] |
P. porostereoides | He1902 | KX212217 | KX212221 | China | [42] |
P. pruinosa | CLZhao 7112 | MZ435346 | MZ435350 | China | [64] |
P. pruinosa | CLZhao 7113 | MZ435347 | MZ435351 | China | [64] |
P. pseudomagnoliae | PP25 | KP135091 | KP135250 | South Africa | [22] |
P. pseudosanguinea | FD-244 | KP135098 | KP135251 | USA | [22] |
P. queletii | FP-102166-Sp | KP134995 | USA | [22] | |
P. queletii | HHB-11463 | KP134994 | KP135235 | USA | [22] |
P. rhizomaurantiata | CLZhao 10470 | MZ435348 | MZ435352 | China | [64] |
P. rhizomaurantiata | CLZhao 10477 | MZ435349 | MZ435353 | China | [64] |
P. rhizomorpha | GC 1708-335 | MZ422824 | MZ637208 | China | [24] |
P. rhizomorpha | GC 1708-354 | MZ422825 | MZ637209 | China | [25] |
P. rhodella | FD-18 | KP135187 | KP135258 | USA | [22] |
P. robusta | Wu 1109-69 | MF399409 | MF399400 | China | [78] |
P. robusta | MG265 | KP127068 | KP127069 | China | [23] |
P. sanguineocarnosa | FD-359 | KP135122 | KP135245 | USA | [22] |
P. sinensis | He 4660 | MT235688 | MT248175 | China | [76] |
P. sinensis | GC 1809-56 | MT235689 | MT248176 | China | [76] |
P. singularis | He1873 | KX212220 | KX212224 | China | [78] |
P. spadicea | Wu 0504-15 | MZ422837 | MZ637219 | China | [25] |
P. spadicea | Wu 0504-11 | MZ422836 | China | [25] | |
P. stereoides | He 5824 | MT235677 | MT248158 | Sri Lanka | [76] |
P. stereoides | He2309 | KX212219 | KX212223 | China | [42] |
P. subcarnosa | Wu 9310-3 | MZ422841 | GQ470642 | China | [21] |
P. subcarnosa | GC 1809-90 | MZ422840 | MZ637222 | China | [25] |
P. subrosea | He 2421 | MT235687 | MT248174 | China | [76] |
P. subtropica | CLZhao F8716 | OP605486 | OQ195089 | China | [27] |
P. subtropica | CLZhao F2763 | OP605518 | OQ195090 | China | [27] |
P. subtropica | CLZhao F8716 | OP605486 | OQ195089 | China | [27] |
P. subtuberculata | CLZhao F5130 | OP605484 | OQ195088 | China | [27] |
P. subtuberculata | CLZhao F6838 | OP605485 | OQ195087 | China | [27] |
P. subtuberculata | CLZhao F6838 | OP605485 | OQ195087 | China | [27] |
P. taiwaniana | He 5269 | MT235680 | MT248161 | Vietnam | [76] |
P. taiwaniana | Wu 0112-13 | MF399412 | MF399403 | China | [75] |
P. tongbiguanensis | CLZhao 30606 * | OR917875 | OR921222 | China | Present study |
P. tongbiguanensis | CLZhao 30628 | OR917876 | China | Present study | |
P. velutina | He 3079 | MT235681 | MT248162 | China | [76] |
P. velutina | H:7022032 Kotiranta 25567 | KP994354 | KP994387 | Russia | [77] |
P. yunnanensis | He 2719 | MT235683 | MT248166 | China | [76] |
Phanerodontia magnoliae | He 3321 | MT235672 | MT248152 | China | [76] |
Phlebiopsis albescens | He 5805 | MT452526 | China | [35] | |
P. amethystea | CL161 | MK993644 | MK993638 | Brazil | [79] |
P. amethystea | URM84741 | MK993645 | MK993639 | China | [66] |
P. brunnea | He 5822 | MT452527 | MT447451 | China | [35] |
P. brunneocystidiata | Chen 666 | MT561707 | GQ470640 | China | [21] |
P. castanea | Viacheslav Spirin 5295 (H) | KX752610 | KX752610 | Russia | [80] |
P. crassa | He 3349 | MT561712 | MT447407 | China | [35] |
P. crassa | KKN-86 | KP135394 | KP135215 | USA | [22] |
P. cylindrospora | He5932 | MT386403 | MT447444 | China | [35] |
P. cylindrospora | He5984 | MT386404 | MT447445 | China | [35] |
P. lamprocystidiata | He5910 | MT386383 | MT386383 | China | [35] |
P. lamprocystidiata | He3874 | MT386382 | MT447418 | China | [35] |
P. fissurata | CLZhao 30247 | OR917878 | OR921226 | China | Present study |
P. fissurata | CLZhao 30147 * | OR917877 | OR921223 | China | Present study |
P. flavidoalba | Otto Miettinen 17896 (H) | KX752607 | KX752607 | USA | [80] |
P. flavidoalba | HHB-4617 | KP135401 | KP135401 | USA | [22] |
P. flavidoalba | FD-263 | KP135402 | KP135271 | USA | [22] |
P. friesii | He 5722 | MT452528 | MT447413 | Sri Lanka | [35] |
P. friesii | He 5817 | MT452529 | MT447414 | Sri Lanka | [35] |
P. gigantea | CBS:935.70 | MH860011 | MH871798 | Germany | [70] |
P. gigantea | FP-70857-Sp | KP135390 | KP135272 | USA | [22] |
P. lacerata | SWFC00003692 | MT180946 | MT180950 | China | Unpublished |
P. lacerata | SWFC00003705 | MT180947 | MT180951 | China | Unpublished |
P. laxa | Wu 9311_17 | MT561710 | GQ470649 | China | [21] |
P. membranacea | He3842 | MT386400 | China | [35] | |
P. membranacea | He3849 | MT386401 | China | [35] | |
P. pilatii | He5114 | MT386385 | China | [35] | |
P. pilatii | Viacheslav Spirin 5048 (H) | KX752590 | KX752590 | Russia | [80] |
P. sinensis | He4295 | MT386395 | China | [35] | |
P. sinensis | He4665 | MT386396 | China | [35] | |
P. yunnanensis | CLZhao 3958 | MH744140 | MH744142 | China | [81] |
P. yunnanensis | CLZhao 3990 | MH744141 | MH744143 | China | [81] |
Rhizochaete belizensis | FP-150712 | KP135408 | KP135280 | Belize | [22] |
R. flava | CFMR:PR-1141 | KY273030 | KY273033 | Puerto Rico | [82] |
R. fouquieriae | KKN121sp | KY948786 | KY948858 | USA | [57] |
R. radicata | FD-123 | KP135407 | KP135279 | USA | [22] |
R. sulphurosa | URM87190 | KT003522 | KT003519 | Brazil | [83] |
Scytinostroma alutum | CBS:766.81 | MH861486 | MH873225 | France | [70] |
S. alutum | CBS 763.81 | MH861483 | MH873222 | France | [70] |
S. duriusculum | CBS 757.81 | MH861477 | MH873216 | France | [70] |
S. duriusculum | CBS:758.81 | MH861478 | MH873217 | France | [70] |
S. ochroleucum | TAA159869 | AF506468 | AF506468 | Sweden | [41] |
S. portentosum | EL11-99 | AF506470 | AF506470 | Sweden | [41] |
Terana caerulea | FP-104073 | KP134980 | KP135276 | USA | [22] |
T. caerulea | T-616 | KP135276 | USA | [22] | |
Vararia abortiphysa | CBS:632.81 | MH861387 | MH861387 | Gabon | [70] |
V. ambigua | CBS 634.81 | MH861388 | MH873137 | France | [70] |
V. amphithallica | CBS:687.81 | MH861431 | MH861431 | France | [70] |
V. aurantiaca | CBS:642.81 | MH861394 | MH861394 | Gabon | [70] |
V. aurantiaca | CBS:641.81 | MH861393 | MH861393 | France | [70] |
V. breviphysa | CBS:644.81 | MH861396 | MH861396 | Gabon | [70] |
V. calami | CBS:646.81 | MH861398 | MH861398 | France | [70] |
V. calami | CBS:648.81 | MH861399 | MH861399 | France | [70] |
V. callichroa | CBS:744.91 | MH874000 | MH874000 | France | [70] |
V. cinnamomea | CBS:642.84 | MH873488 | MH873488 | Madagascar | [70] |
V. cinnamomea | CBS:641.84 | MH861794 | MH861794 | Madagascar | [70] |
V. cremea | CBS:651.81 | MH873147 | MH873147 | France | [70] |
V. daweishanensis | CLZhao 17911 | OP380613 | OP615103 | China | [43] |
V. daweishanensis | CLZhao 17936 | OP380614 | OP380688 | China | [43] |
V. dussii | CBS:655.81 | MH861405 | MH861405 | France | [70] |
V. dussii | CBS:652.81 | MH873148 | MH873148 | France | [70] |
V. ellipsospora | HHB-19503 | MW740328 | MW740328 | New Zealand | [43] |
V. fragilis | CLZhao 2628 | OP380611 | China | [43] | |
V. fragilis | CLZhao 16475 | OP380612 | OP380687 | China | [43] |
V. fusispora | PDD:119539 | OL709443 | OL709443 | New Zealand | [43] |
V. gallica | CBS 234.91 | MH862250 | MH873932 | Canada | [70] |
V. gallica | CBS 656.81 | MH861406 | MH873152 | France | [70] |
V. gillesii | CBS:660.81 | MH873153 | MH873153 | Cote d’Ivoire | [70] |
V. gomezii | CBS:661.81 | MH873154 | MH873154 | France | [70] |
V. gracilispora | CBS:664.81 | MH861412 | MH861412 | Gabon | [70] |
V. gracilispora | CBS:663.81 | MH861411 | Gabon | [70] | |
V. insolita | CBS:668.81 | MH861413 | MH861413 | France | [70] |
V. intricata | CBS:673.81 | MH861418 | MH861418 | France | [70] |
V. investiens | FP-151122ITS | MH971976 | MH971977 | USA | [72] |
V. malaysiana | CBS:644.84 | MH873490 | MH873490 | Singapore | [70] |
V. minispora | CBS:682.81 | MH861426 | MH861426 | France | [70] |
V. ochroleuca | CBS:465.61 | MH858109 | MH858109 | France | [70] |
V. ochroleuca | JS24400 | AF506485 | AF506485 | Norway | [41] |
V. parmastoi | CBS:879.84 | MH861852 | MH861852 | Uzbekistan | [70] |
V. pectinata | CBS:685.81 | MH861429 | Cote d’Ivoire | [70] | |
V. perplexa | CBS:695.81 | MH861438 | MH861438 | France | [70] |
V. pirispora | CBS:720.86 | MH862016 | MH862016 | France | [70] |
V. rhombospora | CBS:743.81 | MH861470 | MH861470 | France | [70] |
V. rosulenta | CBS:743.86 | MH862028 | France | [70] | |
V. rugosispora | CBS:697.81 | MH861440 | MH861440 | Gabon | [70] |
V. sigmatospora | CBS:748.91 | MH874001 | MH874001 | Netherlands | [70] |
V. sphaericospora | CBS:700.81 | MH873185 | MH873185 | Gabon | [70] |
V. sphaericospora | CBS:703.81 | MH861446 | MH861446 | Gabon | [70] |
V. trinidadensis | CBS:651.84 | MH861803 | MH861803 | Madagascar | [70] |
V. trinidadensis | CBS:650.84 | MH873495 | MH873495 | Madagascar | [70] |
V. tropica | CBS 704.81 | MH861447 | MH873189 | France | [70] |
V. vassilievae | UC2022892 | KP814203 | KP814203 | USA | Unpublished |
V. verrucosa | CBS:706.81 | MH861449 | MH861449 | France | [70] |
V. yingjiangensis | CLZhao 30284 * | OR917879 | OR921225 | China | Present study |
V. yingjiangensis | CLZhao 30392 | OR917880 | OR921224 | China | Present study |
3. Results
3.1. Molecular Phylogeny
3.2. Taxonomy
4. Discussion
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Dai, Y.C. A revised checklist of corticioid and hydnoid fungi in China for 2010. Mycoscience 2011, 52, 69–79. [Google Scholar] [CrossRef]
- Dai, Y.C. Pathogenic wood-decaying fungi on woody plants in China. Mycosystema 2012, 31, 493–509. [Google Scholar]
- Sun, Y.F.; Costa-Rezende, D.H.; Xing, J.H.; Zhou, J.L.; Zhang, B.; Gibertoni, T.B.; Gates, G.; Glen, M.; Dai, Y.C.; Cui, B.K. Multigene phylogeny and taxonomy of Amauroderma s. lat. (Ganodermataceae). Persoonia 2019, 44, 206–239. [Google Scholar] [CrossRef]
- Sun, Y.F.; Xing, J.H.; He, X.L.; Wu, D.M.; Song, C.G.; Liu, S.; Vlasák, J.; Gates, G.; Gibertoni, T.B.; Cui, B.K. Species diversity, sys-tematic revision and molecular phylogeny of Ganodermataceae (Polyporales, Basidiomycota) with an emphasis on Chinese collections. Stud. Mycol. 2022, 101, 287–415. [Google Scholar] [CrossRef]
- Li, Q.S.; Wei, Y.L. Species composition and distribution characteristics of wood-decaying fungi in tropical areas of China. Mycosystema 2021, 40, 2653–2672. [Google Scholar] [CrossRef]
- Dai, Y.C.; Fan, L.F.; Chen, J.J.; Wu, C.P.; Wu, Y.D.; Yuan, Y. Diversity of Heterobasidion causing root and butt rotting of conifers and proposal for entry wood quarantine aiming at Heterobasidion species. Mycosystema 2021, 40, 1958–1964. [Google Scholar] [CrossRef]
- Dai, Y.C.; Liu, H.G.; Wu, F.; Si, J.; Yuan, Y.; He, S.H.; Cui, B.K.; Zhou, M.; Zhao, Q. Resources and Diversity of Wood-Decaying Fungi in Yunnan; Science Press: Beijing, China, 2022; p. 574. [Google Scholar]
- Dai, Y.C.; Yang, Z.L.; Cui, B.K.; Wu, G.; Yuan, H.S.; Zhou, L.W.; He, S.H.; Ge, Z.W.; Wu, F.; Wei, Y.L.; et al. Diversity and systematics of the important macrofungi in Chinese forests. Mycosystema 2021, 40, 770–805. [Google Scholar] [CrossRef]
- Liu, S.; Chen, Y.Y.; Sun, Y.F.; He, X.L.; Song, C.G.; Si, J.; Liu, D.M.; Gates, G.; Cui, B.K. Systematic classification and phylogenetic relationships of the brown rot fungi within the Polyporales. Fungal Divers. 2023, 118, 1–94. [Google Scholar] [CrossRef]
- Liu, S.; Han, M.L.; Xu, T.M.; Wang, Y.; Wu, D.M.; Cui, B.K. Taxonomy and phylogeny of the Fomitopsis pinicola complex with de-scriptions of six new species from East Asia. Front. Microbiol. 2021, 12, 644979. [Google Scholar] [CrossRef]
- Yuan, Y.; Bian, L.S.; Wu, Y.D.; Chen, J.J.; Wu, F.; Liu, H.G.; Zeng, G.Y.; Dai, Y.C. Species diversity of pathogenic wood-rotting fungi (Agaricomycetes, Basidiomycota) in China. Mycology 2023, 14, 204–226. [Google Scholar] [CrossRef] [PubMed]
- He, M.Q.; Zhao, R.L.; Hyde, K.D.; Begerow, D.; Kemler, M.; Yurkov, A.; McKenzie, E.H.C.; Raspé, O.; Kakishima, M.; Sánchez-Ramírez, S.; et al. Notes, outline and divergence times of Basidiomycota. Fungal Diver. 2019, 99, 105–367. [Google Scholar]
- Bernicchia, A.; Gorjón, S.P. Fungi Europaei 12: Corticiaceae s.l.; Edizioni Candusso: Alassio, Italy, 2011. [Google Scholar]
- Larsson, K.H.; Larsson, E.; Kõljalg, U. High phylogenetic diversity among corticioid homobasidiomycetes. Mycol. Res. 2004, 108, 983–1002. [Google Scholar] [CrossRef]
- Parmasto, E. The Lachnocladiaceae of the Soviet Union. With a Key to the Boreal Species; Institute of Zoology and Botany, Academy of Sciences of the Estonian S.S.R.: Tartu, Estonia, 1971; p. 167. [Google Scholar]
- Hallenberg, N.; Eriksson, J. The Lachnocladiaceae and Coniophoraceae of North Europoe; Fungiflora: Oslo, Norway, 1985; p. 96. [Google Scholar]
- Suhara, H.; Maekawa, N.; Ushijima, S.; Kinjo, K.; Hoshi, Y. Asterostroma species (Basidiomycota) from mangrove forests in Japan. Mycoscience 2010, 51, 75–80. [Google Scholar] [CrossRef]
- Liu, S.L.; Tian, Y.; Nie, T.; Thawthong, A.; Hyde, K.D.; Xu, L.L.; He, S.H. Updates on East Asian Asterostroma (Russulales, Basidiomycota): New species and new records from Thailand and China. Mycol. Prog. 2017, 16, 667–676. [Google Scholar] [CrossRef]
- Karsten, P. Kritisk öfversigt af Finlan’s Basidsvamper (Basidiomycetes, Gastero- & Hxmenomycetes). Bidr. Till Kännedom Finl. Nat. Och Folk. 1889, 48, 1–470. [Google Scholar]
- Wu, S.H. Six new species of Phanerochaete from Taiwan. Bot. Bull. Acad. Sin. 2000, 41, 165–174. [Google Scholar]
- Wu, S.H.; Nilsson, H.R.; Chen, C.T.; Yu, S.Y.; Hallenberg, N. The white-rotting genus Phanerochaete is polyphyletic and distributed throughout the phleboid clade of the Polyporales (Basidiomycota). Fungal Diver. 2010, 42, 107–118. [Google Scholar] [CrossRef]
- Floudas, D.; Hibbett, D.S. Revisiting the taxonomy of Phanerochaete (Polyporales, Basidiomycota) using a four gene dataset and extensive ITS sampling. Fungal Biol. 2015, 119, 679–719. [Google Scholar] [CrossRef] [PubMed]
- Ghobad-Nejhad, M.; Liu, S.L.; Langer, E.; Dai, Y.C. Molecular and morphological evidence reveal a new non-cystidiate species belonging to the core Phanerochaete (Polyporales). Mycol. Prog. 2015, 14, 68. [Google Scholar] [CrossRef]
- Boonmee, S.; Wanasinghe, D.N.; Calabon, M.S.; Huanraluek, N.; Chandrasiri, S.K.U.; Jones, G.E.B.; Rossi, W.; Leonardi, M.; Singh, S.K.; Rana, S.; et al. Fungal Diver. notes 1387–1511: Taxonomic and phylogenetic contributions on genera and species of fungal taxa. Fungal Diver. 2021, 111, 1–335. [Google Scholar] [CrossRef] [PubMed]
- Chen, C.C.; Chen, C.Y.; Wu, S.H. Species diversity, taxonomy and multi-gene phylogeny of phlebioid clade (Phanerochaetaceae, Irpicaceae, Meruliaceae) of Polyporales. Fungal Diver. 2021, 111, 337–442. [Google Scholar] [CrossRef]
- Li, Y.; Chen, C.C.; He, S.H. New corticioid taxa in Phanerochaetaceae (Polyporales, Basidiomycota) from East Asia. Front. Microbiol. 2023, 14, 1093096. [Google Scholar] [CrossRef]
- Yu, J.; Cai, J.; Liu, H.G.; Zhao, C.L. Molecular systematics and taxonomy reveal three new taxa in Phanerochaete (Phanerochaetaceae, Polyporales) from the Yunnan–Guizhou plateau, East Asia. Mycol. Prog. 2023, 22, 59. [Google Scholar] [CrossRef]
- Zhang, Q.Y.; Liu, Z.B.; Liu, H.G.; Si, J. Two new corticioid species of Phanerochaetaceae (Polyporales, Basidiomycota) from Southwest China. Front. Cell. Infect. Microbiol. 2023, 13, 1105918. [Google Scholar] [CrossRef]
- Jülich, W. Studies in resupinate Basidiomycetes V. Some new genera and species. Persoonia 1978, 10, 137–140. [Google Scholar]
- Dhingra, G.S. The genus Phlebiopsis in the Eastern Himalayas. Nova Hedwig. 1987, 44, 221–227. [Google Scholar]
- Wu, S.H. Two new species of Phanerochaete from Taiwan. Mycotaxon 2004, 90, 423–429. [Google Scholar]
- Priyanka; Dhingra, G.S.; Kaur, N. Phlebiopsis mussooriensis (Agaricomycetes), a new corticioid species from India. Mycotaxon 2011, 115, 255–258. [Google Scholar] [CrossRef]
- Kaur, G.; Singh, A.P.; Dhingra, G.S. Phlebiopsis punjabensis, a new species from India. Mycotaxon 2015, 130, 907–909. [Google Scholar] [CrossRef]
- Xu, T.M.; Zeng, Y.F.; Cheng, Y.H.; Zhao, C.L. Phlebiopsis lacerata sp. nov (Polyporales, Basidiomycota) from southern China. Phytotaxa 2020, 440, 268–280. [Google Scholar] [CrossRef]
- Zhao, Y.N.; He, S.H.; Nakasone, K.K.; Wasantha, K.L.; Chen, C.C.; Liu, S.L.; Ma, H.X.; Huang, M.R. Global phylogeny and taxonomy of the wood-decaying fungal genus Phlebiopsis (Polyporales, Basidiomycota). Front. Microbiol. 2021, 12, 622460. [Google Scholar] [CrossRef]
- Karsten, P.A. Kritisk Ofversigt af Finlands Basidsvampar. Biology 1898, 3, 1–36. [Google Scholar]
- Boidin, J.; Lanquetin, P. Vararia subgenus Vararia (Basidiomycetes, Lachnocladiaceae): Étude spèciale des espèces d’ Afrique intertropicale. Bull. Soc. Mycol. Fr. 1975, 91, 457–513. [Google Scholar]
- Boidin, J. Application du concept biologique del’espèce aux Basidiomycètes. Le genre Vararia section Vararia au Gabon. Cryptogam. Mycol. 1980, 1, 265–384. [Google Scholar]
- Boidin, J.; Lanquetin, P. Le genre Scytinostroma Donk (Basidiomycetes, Lachnocladiaceae). Bibl. Mycol. 1987, 114, 1–130. [Google Scholar]
- Stalpers, J.A. The aphyllophoraceous fungi II. Keys to the species of the Hericiales. Stud. Mycol. 1996, 40, 1–183. [Google Scholar]
- Larsson, E.; Larsson, K.H. Phylogenetic relationships of russuloid basidiomycetes with emphasis on aphyllophoralean taxa. Mycologia 2003, 95, 1037–1065. [Google Scholar] [CrossRef]
- Liu, S.L.; He, S.H. The genus Vararia (Russulales, Basidiomycota) in China. Two new species and two new Chinese records. Nord. J. Bot. 2016, 34, 553–558. [Google Scholar] [CrossRef]
- Zou, L.; Zhang, X.L.; Deng, Y.L.; Zhao, C.L. Four new wood-inhabiting fungal species of Peniophoraceae (Russulales, Basidiomycota) from the Yunnan-Guizhou Plateau, China. J. Fungi 2022, 8, 1227. [Google Scholar] [CrossRef] [PubMed]
- Deng, Y.L.; Zhao, C.L. The molecular phylogeny and morphology revealed a new wood-rotting fungus Vararia yunnanensis (Peniophoraceae, Russulales) in Yunnan Province, China. Phytotaxa 2023, 583, 39–49. [Google Scholar] [CrossRef]
- Cunningham, G.H. Thelephoraceae of New Zealand. Part IV. The genus Vararia. Trans. Proc. R. Soc. N. Z. 1955, 82, 973–985. [Google Scholar]
- Gilbertson, R.L. Some species of Vararia from temperate North America. Pap. Mich. Acad. Sci. 1965, 50, 161–184. [Google Scholar]
- Boidin, J. Basidiomycètes Lachnocladiaceae résupinés de la Republique Centrafricaine. Cah. Maboké 1967, 5, 23–35. [Google Scholar]
- Pouzar, Z. Taxonomic studies in resupinate fungi I. Česká Mykol. 1982, 36, 141–145. [Google Scholar]
- Boidin, J.; Gilles, G. Contribution à la connaissance du genre Vararia (Basidiomycotina). Bull. Soc. Mycol. 1999, 115, 115–139. [Google Scholar]
- Duhem, B.; Buyck, B. On two new tropical Vararia (Russulales, Basidiomycota) with extremely small, racemose dichohyphidia. Cryptogam. Mycology 2012, 33, 427–437. [Google Scholar]
- Sanyal, S.K.; Dhingra, G.S.; Singh, A.P. Vararia longicystidiata sp. nov. (Agaricomycetes) from India. Mycotaxon 2012, 120, 357–360. [Google Scholar] [CrossRef]
- Nakasone, K.K. Taxonomic studies in Chrysoderma, Corneromyces, Dendrophysellum, Hyphoradulum, and Mycobonia. Mycotaxon 2015, 130, 369–397. [Google Scholar] [CrossRef]
- Larsson, K.H. Re-thinking the classification of corticioid fungi. Mycol. Res. 2007, 111, 1040–1063. [Google Scholar] [CrossRef] [PubMed]
- Luo, K.Y.; Zhao, C.L. A molecular systematics and taxonomy research on Trechispora (Hydnodontaceae, Trechisporales): Concentrating on three new Trechispora species from East Asia. J. Fungi 2022, 8, 1020. [Google Scholar] [CrossRef] [PubMed]
- Zhao, C.L.; Qu, M.H.; Huang, R.X.; Karunarathna, S.C. Multi-gene phylogeny and taxonomy of the wood-rotting fungal genus Phlebia sensu lato (Polyporales, Basidiomycota). J. Fungi 2023, 9, 320. [Google Scholar] [CrossRef]
- Binder, M.; Hibbett, D.S.; Larsson, K.H.; Larsson, E.; Langer, E.; Langer, G. The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes). Syst. Biodivers. 2005, 3, 113–157. [Google Scholar] [CrossRef]
- Binder, M.; Justo, A.; Riley, R.; Salamov, A.; Lopez-Giraldez, F.; Sjökvist, E.; Copeland, A.; Foster, B.; Sun, H.; Larsson, E.; et al. Phylogenetic and phylogenomic overview of the Polyporales. Mycologia 2013, 105, 350–1373. [Google Scholar] [CrossRef]
- Justo, A.; Miettinen, O.; Floudas, D.; Ortiz-Santana, B.; Sjökvist, E.; Lindner, D.; Nakasone, K.; Niemelä, T.; Larsson, K.H.; Ryvarden, L.; et al. A revised family-level classifcation of the Polyporales (Basidiomycota). Fungal Biol. 2017, 121, 798–824. [Google Scholar] [CrossRef]
- Haelewaters, D.; Wijayawardene, N.N.; Hyde, K.D.; Dai, D.Q.; Sánchez-García, M. Outline of Fungi and fungus-like taxa-2021. Mycosphere 2022, 13, 53–453. [Google Scholar] [CrossRef]
- Reid, D.A. A Monograph of the Stipitate Stereoid Fungi; J. Cramer: Weinheim, Germany, 1965. [Google Scholar]
- Miller, S.L.; Larsson, E.; Larsson, K.H.; Verbeken, A.; Nuytinck, J. Perspectives in the new Russulales. Mycologia 2006, 98, 960–970. [Google Scholar] [CrossRef] [PubMed]
- White, T.J.; Bruns, T.; Lee, S.; Taylor, J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. PCR Protoc. A Guide Methods Appl. 1990, 18, 315–322. [Google Scholar] [CrossRef]
- Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41, 95–98. [Google Scholar]
- Wang, D.Q.; Zhao, C.L. Morphological and phylogenetic evidence for recognition of two new species of Phanerochaete from East Asia. J. Fungi 2021, 7, 1063. [Google Scholar] [CrossRef] [PubMed]
- Leal-Dutra, C.A.; Neves, M.A.; Griffith, G.W.; Reck, M.A.; Clasen, L.A.; Dentinger, B.T.M. Reclassification of Parapterulicium Corner (Pterulaceae, Agaricales), contributions to Lachnocladiaceae and Peniophoraceae (Russulales) and introduction of Baltazaria gen. nov. MycoKeys 2018, 37, 39–56. [Google Scholar] [CrossRef] [PubMed]
- Zhao, C.L.; Wu, Z.Q. Ceriporiopsis kunmingensis sp. nov. (Polyporales, Basidiomycota) evidenced by morphological characters and phylogenetic analysis. Mycol. Prog. 2017, 16, 93–100. [Google Scholar] [CrossRef]
- Swofford, D.L. PAUP*: Phylogenetic Analysis Using Parsimony (* and Other Methods), Version 4.0b10; Sinauer Associates: Sunderland, MA, USA, 2002.
- Felsenstein, J. Confidence intervals on phylogenetics: An approach using bootstrap. Evolution 1985, 39, 783–791. [Google Scholar] [CrossRef]
- Miller, M.A.; Pfeiffer, W.; Schwartz, T. The CIPRES Science Gateway: Enabling high-impact science for phylogenetics researchers with limited resources. Assoc. Comput. Mach. 2012, 39, 1–8. [Google Scholar] [CrossRef]
- Vu, D.; Groenewald, M.; Vries, M.; Gehrmann, T.; Stielow, B.; Eberhardt, U.; Al-Hatmi, A.; Groenewald, J.Z.; Cardinali, G.; Houbraken, J.; et al. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Stud. Mycol. 2019, 92, 135–154. [Google Scholar] [CrossRef]
- Liu, S.L.; Nakasone, K.K.; He, S.H. Michenera incrustata sp. nov. (Peniophoraceae, Russulales) from southern China. Nova Hedwig. 2019, 108, 197–206. [Google Scholar] [CrossRef]
- Liu, S.L.; He, S.H. Taxonomy and phylogeny of Dichostereum (Russulales), with descriptions of three new species from southern China. MycoKeys 2018, 40, 111–126. [Google Scholar] [CrossRef]
- Spirin, V.; Malysheva, V.; Miettinen, O.; Vlasák, J.; Alvarenga, R.L.M.; Gibertoni, T.B.; Ryvarden, L.; Larsson, K.K. On Protomerulius and Heterochaetella (Auriculariales, Basidiomycota). Mycol. Prog. 2019, 18, 1079–1099. [Google Scholar] [CrossRef]
- Phookamsak, R.; Hyde, K.D.; Jeewon, R.; Bhat, D.J.; Jones, E.B.G.; Maharachchikumbura, S.; Raspé, O.; Karunarathna, S.C.; Wanasinghe, D.; Hongsanan, S.; et al. Fungal diversity notes 929–1035: Taxonomic and phylogenetic contributions on genera and species of fungi. Fungal Divers. 2019, 95, 1–273. [Google Scholar] [CrossRef]
- Wu, S.H.; Chen, Y.P.; Wei, C.L.; Floudas, D.; Dai, Y.C. Two new species of Phanerochaete (Basidiomycota) and redescription of P. robusta. Mycol. Prog. 2017, 17, 425–435. [Google Scholar] [CrossRef]
- Xu, Y.L.; Cao, Y.F.; Nakasone, K.K.; Chen, C.C.; He, S.H. Taxonomy and phylogeny of Phanerochaete sensu stricto (Polyporales, Basidiomycota) with emphasis on Chinese collections and descriptions of nine new species. Mycosphere 2020, 11, 1527–1552. [Google Scholar] [CrossRef]
- Volobuev, S.; Okun, M.; Ordynets, A.; Spirin, V. The Phanerochaete sordida group (Polyporales, Basidiomycota) in temperate Eurasia, with a note on Phanerochaete pallida. Mycol. Prog. 2015, 14, 80. [Google Scholar] [CrossRef]
- Wu, S.H.; Chen, C.C.; Wei, C.L. Three new species of Phanerochaete (Polyporales, Basidiomycota). MycoKeys 2018, 41, 91–106. [Google Scholar] [CrossRef] [PubMed]
- Lima, V.X.; Lira, C.S.; Chikowski, R.S.; Santos, C.; Lima, N.; Gibertoni, T.B. Additions to neotropical stereoid fungi (Polyporales, Basidiomycota): One new species of Lopharia and one new combination in Phlebiopsis. Mycol. Prog. 2020, 19, 31–40. [Google Scholar] [CrossRef]
- Miettinen, O.; Spirin, V.; Vlasák, J.; Rivoire, B.; Stenroos, S.; Hibbett, D. Polypores and genus concepts in Phanerochaetaceae (Polyporales, Basidiomycota). MycoKeys 2016, 17, 1–46. [Google Scholar] [CrossRef]
- Zhao, C.L.; Liu, X.F.; Ma, X. Phlebiopsis yunnanensis sp. nov. (Polyporales, Basidiomycota) evidenced by morphological characters and phylogenetic analysis. Nova Hedwig. 2019, 108, 265–279. [Google Scholar] [CrossRef]
- Nakasone, K.K.; Draeger, K.R.; Ortiz-Santana, B. A contribution to the taxonomy of Rhizochaete (Polyporales, Basidiomycota). Cryptogam. Mycol. 2017, 38, 81–99. [Google Scholar] [CrossRef]
- Chikowski, R.S.; Larsson, K.H.; Gibertoni, T.B. Three new combinations in Rhizochaete (Agaricomycetes, Fungi) and a new record to the Brazilian Amazonia. Nova Hedwig. 2016, 102, 185–196. [Google Scholar] [CrossRef]
- Nylander, J.A.A. MrModeltest v2; Program Distributed by the Author; Evolutionary Biology Centre, Uppsala University: Upp-sala, Sweden, 2004. [Google Scholar]
- Ronquist, F.; Teslenko, M.; van der Mark, P.; Ayres, D.L.; Darling, A.; Hohna, S.; Larget, B.; Liu, L.; Suchard, M.A.; Huelsenbeck, J.P. Mrbayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 2012, 61, 539–542. [Google Scholar] [CrossRef]
- Massee, G.E. A monograph of the Thelephoraceae. Part I Bot. J. Linn. Soc. 1889, 25, 107–155. [Google Scholar] [CrossRef]
- Karasiński, D. Polish resupinate Russulales: The genus Vararia. Acta Mycol. 2010, 45, 45–56. [Google Scholar] [CrossRef]
- Welden, A.L. West Indian species of Vararia with notes on extralimital species. Mycologia 1965, 57, 502–520. [Google Scholar] [CrossRef]
- Yang, Y.Y.; Jiang, Q.Q.; Li, Q.; Yang, J.W.; Cha, L.J.; Cheng, L.; Yang, S.Q.; Zhao, C.L.; Zhou, H.M. Molecular systematics and taxonomic analyses of three new wood-inhabiting fungi of Hyphoderma (Hyphodermataceae, Basidiomycota). J. Fungi 2023, 9, 1044. [Google Scholar] [CrossRef] [PubMed]
- Bian, L.S.; Wu, F.; Dai, Y.C. Two new species of Coltricia (Hymenochaetaceae, Basidiomycota) from Southern China based onevidence from morphology and DNA sequence data. Mycol. Prog. 2016, 15, 27. [Google Scholar] [CrossRef]
- Zhao, C.L.; Wu, F.; Dai, Y.C. Leifiporia rhizomorpha gen. et sp. nov. and L. eucalypti comb. nov. in Polyporaceae (Basidiomycota). Mycol. Prog. 2016, 15, 799–809. [Google Scholar] [CrossRef]
- Guan, Q.X.; Zhao, T.J.; Zhao, C.L. Morphological characters and phylogenetic analyses reveal two new species of Peniophorella from Southern China. Mycol. Prog. 2020, 19, 397–404. [Google Scholar] [CrossRef]
Genes | Primers | Temperature | Time | |
---|---|---|---|---|
ITS | Primer (10 µmol/L) (ITS 5) Primer (10 µmol/L) (ITS 4) | Predegeneration 94 °C | 1.5 min | 35 cycles |
Denaturation 94 °C | 30 s | |||
Renaturation 55 °C | 45 s | |||
Extend 72 °C | 1 min | |||
Extend 72 °C | 10 min | |||
Save 4 °C | — | |||
nLSU | Primer (10 µmol/L) (LROR) Primer (10 µmol/L) (LR 7) | Predegeneration 94 °C | 1.5 min | |
Denaturation 94 °C | 20 s | |||
Renaturation 48 °C | 1.5 min | |||
Extend 72 °C | 1.5 min | |||
Extend 72 °C | 5 min | |||
Save 4 °C | — |
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content. |
© 2024 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
Share and Cite
Deng, Y.; Li, J.; Zhao, C.; Zhao, J. Four New Fungal Species in Forest Ecological System from Southwestern China. J. Fungi 2024, 10, 194. https://doi.org/10.3390/jof10030194
Deng Y, Li J, Zhao C, Zhao J. Four New Fungal Species in Forest Ecological System from Southwestern China. Journal of Fungi. 2024; 10(3):194. https://doi.org/10.3390/jof10030194
Chicago/Turabian StyleDeng, Yinglian, Jinfa Li, Changlin Zhao, and Jian Zhao. 2024. "Four New Fungal Species in Forest Ecological System from Southwestern China" Journal of Fungi 10, no. 3: 194. https://doi.org/10.3390/jof10030194
APA StyleDeng, Y., Li, J., Zhao, C., & Zhao, J. (2024). Four New Fungal Species in Forest Ecological System from Southwestern China. Journal of Fungi, 10(3), 194. https://doi.org/10.3390/jof10030194