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Proteomes, Volume 10, Issue 1

2022 March - 9 articles

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Articles (9)

  • Article
  • Open Access
8 Citations
6,276 Views
18 Pages

Data-Independent Acquisition Enables Robust Quantification of 400 Proteins in Non-Depleted Canine Plasma

  • Halley Gora Ravuri,
  • Zainab Noor,
  • Paul C. Mills,
  • Nana Satake and
  • Pawel Sadowski

28 February 2022

Mass spectrometry-based plasma proteomics offers a major advance for biomarker discovery in the veterinary field, which has traditionally been limited to quantification of a small number of proteins using biochemical assays. The development of founda...

  • Article
  • Open Access
10 Citations
5,154 Views
17 Pages

Molecular Dynamics Study of Citrullinated Proteins Associated with the Development of Rheumatoid Arthritis

  • Amir Taldaev,
  • Vladimir Rudnev,
  • Liudmila Kulikova,
  • Kirill Nikolsky,
  • Alexander Efimov,
  • Kristina Malsagova and
  • Anna Kaysheva

11 February 2022

Biological activity regulation by protein post-translational modification (PTM) is critical for cell function, development, differentiation, and survival. Dysregulation of PTM proteins is present in various pathological conditions, including rheumato...

  • Article
  • Open Access
4 Citations
4,765 Views
21 Pages

Bovine Peripheral Blood Derived Lymphocyte Proteome and Secretome Show Divergent Reaction of Bovine Immune Phenotypes after Stimulation with Pokeweed Mitogen

  • Kristina J. H. Kleinwort,
  • Roxane L. Degroote,
  • Sieglinde Hirmer,
  • Lucia Korbonits,
  • Lea Lorenz,
  • Armin M. Scholz,
  • Stefanie M. Hauck and
  • Cornelia A. Deeg

We recently identified a deviant bovine immune phenotype characterized by hyperproliferation of lymphocytes after polyclonal stimulation. This phenotype was first discovered in dams that responded to PregSure BVD vaccination by producing pathological...

(This article belongs to the Section Animal Proteomics)
  • Review
  • Open Access
42 Citations
8,587 Views
14 Pages

The interaction between plants and pathogenic microorganisms is a multifaceted process mediated by both plant- and pathogen-derived molecules, including proteins, metabolites, and lipids. Large-scale proteome analysis can quantify the dynamics of pro...

(This article belongs to the Section Plant Proteomics)
  • Article
  • Open Access
20 Citations
9,127 Views
15 Pages

Potential Tear Biomarkers for the Diagnosis of Parkinson’s Disease—A Pilot Study

  • Arantxa Acera,
  • Juan Carlos Gómez-Esteban,
  • Ane Murueta-Goyena,
  • Marta Galdos,
  • Mikel Azkargorta,
  • Felix Elortza,
  • Noelia Ruzafa,
  • Oliver Ibarrondo,
  • Xandra Pereiro and
  • Elena Vecino

Parkinson’s disease (PD) is the second most common neurodegenerative disease after Alzheimer’s disease. In this study, the tear proteome profile of patients with idiopathic PD (iPD, n = 24), carriers of the E46K-SNCA mutation (n = 3) and...

  • Article
  • Open Access
5 Citations
4,695 Views
10 Pages

Multiplexed proteomics using isobaric tagging allows for simultaneously comparing the proteomes of multiple samples. In this technique, digested peptides from each sample are labeled with a chemical tag prior to pooling sample for LC-MS/MS with nanof...

  • Article
  • Open Access
22 Citations
8,787 Views
13 Pages

Comparison of Different Label-Free Techniques for the Semi-Absolute Quantification of Protein Abundance

  • Aarón Millán-Oropeza,
  • Mélisande Blein-Nicolas,
  • Véronique Monnet,
  • Michel Zivy and
  • Céline Henry

In proteomics, it is essential to quantify proteins in absolute terms if we wish to compare results among studies and integrate high-throughput biological data into genome-scale metabolic models. While labeling target peptides with stable isotopes al...

  • Article
  • Open Access
3 Citations
4,189 Views
13 Pages

29 December 2021

De novo sequencing is indispensable for the analysis of proteins from organisms with unknown genomes, novel splice variants, and antibodies. However, despite a variety of methods developed to this end, distinguishing between the correct interpretatio...

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Proteomes - ISSN 2227-7382