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Epigenomes, Volume 9, Issue 2

2025 June - 13 articles

Cover Story: Aging and cancer converge through epigenetic disruption, particularly in DNA methylation. This review examines how age-related methylation drift, entropy, and epigenetic mosaicism impair gene regulation and genome integrity. It highlights how promoter hypermethylation silences tumor suppressor genes while global hypomethylation activates oncogenic elements. A central model depicts young tissues with stable methylation patterns, aged tissues with mosaicism, and further disruption driving malignant transformation. Framing cancer as a consequence of accelerated epigenetic aging, the review underscores the need for age-aware models and offers insights into using DNA methylation as a biomarker and therapeutic target, underscoring the diagnostic and therapeutic potential of methylation-based biomarkers. View this paper
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Articles (13)

  • Article
  • Open Access
1 Citations
1,971 Views
12 Pages

Methylation of the Glucocorticoid Receptor Gene in Children with Somatic Symptom Disorder: A Case-Control Study

  • Kyoko Hatta,
  • Masato Kantake,
  • Kyoko Tanaka,
  • Hirofumi Nakaoka,
  • Toshiaki Shimizu and
  • Hiromichi Shoji

Background: Somatic symptom disorder (SSD) in children may be influenced by stress reactivity and psychosocial factors. The glucocorticoid receptor (GR), encoded by NR3C1, is a key mediator of stress responses. However, the relationship between NR3C1...

  • Review
  • Open Access
3,294 Views
15 Pages

R-loops, three-stranded RNA-DNA hybrid nucleic acid structures, are recognized for their roles in both physiological and pathological processes. Regulation of R-loops is critical for genome stability as disruption of R-loop homeostasis can lead to ab...

  • Review
  • Open Access
2 Citations
1,896 Views
23 Pages

Epigenetic Insights into Tuberous Sclerosis Complex, Von Hippel–Lindau Syndrome, and Ataxia–Telangiectasia

  • Gavriel Hadjigavriel,
  • Christina Stylianides,
  • Evangelos Axarloglou,
  • Maria Eleni Manthou,
  • Efstratios Vakirlis,
  • Paschalis Theotokis,
  • Soultana Meditskou and
  • Iasonas Dermitzakis

Neurocutaneous syndromes represent a clinically and genetically heterogeneous group of disorders, with tuberous sclerosis complex (TSC), von Hippel–Lindau syndrome (VHL), and ataxia–telangiectasia (A-T) exemplifying some of the most compl...

  • Article
  • Open Access
2,091 Views
17 Pages

Association of Model-Predicted Epigenetic Age and Female Infertility

  • Elena Pozdysheva,
  • Vitaly Korchagin,
  • Tatiana Rumyantseva,
  • Daria Ogneva,
  • Vera Zhivotova,
  • Irina Gaponova,
  • Konstantin Mironov and
  • Vasily Akimkin

Background: To date, there are no precise clinical and laboratory methods to accurately predict the onset of fertility decline in women, with chronological age being the ultimate predictor. This has led to increased interest in developing methods to...

  • Review
  • Open Access
7 Citations
6,080 Views
15 Pages

DNA Methylation, Aging, and Cancer

  • Himani Vaidya,
  • Jaroslav Jelinek and
  • Jean-Pierre J. Issa

Aging and cancer, though distinct biological processes, share overlapping molecular pathways, particularly in epigenetic regulation. Among these, DNA methylation is central to mediating gene expression, maintaining cellular identity, and regulating g...

  • Opinion
  • Open Access
3 Citations
3,372 Views
13 Pages

This review paper highlights the importance of educating current and future professionals about epigenetic mechanisms and recognizing epigenetics as a crucial model for protection against ionizing radiation. Two basic models for radiation-induced DNA...

  • Review
  • Open Access
1,303 Views
19 Pages

Genetics and Epigenetics of Chemoinduced Oral Mucositis in Paediatric Patients with Haematological Malignancies—A Review

  • Juliana Ramalho Guimarães,
  • José Maria Chagas Viana Filho and
  • Naila Francis Paulo de Oliveira

Background: Oral mucositis (OM) is a painful inflammation resulting from chemotherapy. It is dependent on factors such as age, gender, chemotherapy regimen, oral health, immunological and nutritional status, and genetics. Objectives: The aim of the s...

  • Article
  • Open Access
1 Citations
1,374 Views
18 Pages

Histone H3 Lysine 9 Acetylation Plays a Role in Adipogenesis of Periodontal Ligament-Derived Stem Cells

  • Julio A. Montero-Del-Toro,
  • Angelica A. Serralta-Interian,
  • Geovanny I. Nic-Can,
  • Mónica Lamas,
  • Rodrigo A. Rivera-Solís and
  • Beatriz A. Rodas-Junco

Background: The epigenetic regulation of adipogenic differentiation in dental stem cells (DSCs) remains poorly understood, as research has prioritized osteogenic differentiation for dental applications. However, elucidating these mechanisms could ena...

  • Article
  • Open Access
2 Citations
2,535 Views
19 Pages

Discrimination, Coping, and DNAm Accelerated Aging Among African American Mothers of the InterGEN Study

  • Alexandria Nyembwe,
  • Yihong Zhao,
  • Billy A. Caceres,
  • Daniel W. Belsky,
  • Calen Patrick Ryan,
  • Brittany Taylor,
  • Morgan T. Morrison,
  • Laura Prescott,
  • Stephanie Potts-Thompson and
  • Jacquelyn Y. Taylor
  • + 5 authors

Background: Racial discrimination experiences are associated with the activation of stress biology pathways and signs of accelerated biological aging, including alterations in DNA methylation (DNAm). Coping strategies may mitigate stress from racial...

  • Article
  • Open Access
1,529 Views
22 Pages

Arabidopsis thaliana Roots Exposed to Extracellular Self-DNA: Evidence of Epigenetic Effects

  • Alessia Ronchi,
  • Guido Incerti,
  • Emanuele De Paoli,
  • Speranza Claudia Panico,
  • Giovanni Luca Sciabbarrasi,
  • Pasquale Termolino,
  • Fabrizio Cartenì,
  • Mariachiara Langella,
  • Maria Luisa Chiusano and
  • Stefano Mazzoleni

Background: Previous evidence demonstrated DNA methylation changes in response to stress in plants, showing rapid changes within a limited time frame. Exposure to self-DNA inhibits seedling root elongation, and it was shown that it causes changes in...

  • Article
  • Open Access
1,438 Views
11 Pages

The Effect of Clinical Factors on the Reversion of Cg05575921 Methylation in Smoking Cessation

  • Robert Philibert,
  • Steven R. H. Beach,
  • Michelle R. vanDellen,
  • James A. Mills and
  • Jeffrey D. Long

Background: Financial Incentive Treatments (FIT) can be effective in the treatment of smoking. However, weaknesses in current biochemical approaches for assessing smoking cessation may hinder its implementation, particularly for management of long-te...

  • Review
  • Open Access
1 Citations
3,186 Views
13 Pages

Induction of DNA Demethylation: Strategies and Consequences

  • Pietro Salvatore Carollo and
  • Viviana Barra

DNA methylation is an important epigenetic modification with a plethora of effects on cells, ranging from the regulation of gene transcription to shaping chromatin structure. Notably, DNA methylation occurs thanks to the activity of DNA methyltransfe...

  • Review
  • Open Access
13 Citations
4,596 Views
27 Pages

Background: Plants face a wide range of environmental stresses that disrupt growth and productivity. To survive and adapt, they undergo complex metabolic reprogramming by redirecting carbon and nitrogen fluxes toward the biosynthesis of protective se...

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Epigenomes - ISSN 2075-4655