Genetic Diversity of Dengue Vector Aedes albopictus Collected from South Korea, Japan, and Laos
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sampling and DNA Extraction
2.2. Molecular Methods (Polymerase Chain Reaction [PCR])
2.3. Mitochondrial DNA Data Analysis for Genetic Diversity and Gene Flow
2.4. Microsatellite Data Analyses
3. Results
3.1. Genetic Diversity and Population Structure of Mitochondrial DNA
3.2. Genetic Diversity and Population Structure of Ae. albopictus Based on Microsatellite Markers
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Conflicts of Interest
References
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Locality | Sample ID | Geographic Coordinates | Date | Sample Size | No. Haplotypes | S | k | Hd | π | Tajima’s D | Fu’s Fs |
---|---|---|---|---|---|---|---|---|---|---|---|
Wonju (2017) | WJ-I | 37°22′52.6″ N 127°53′36.1″ E | 2017.07 | 18 | 5 | 4 | 0.725 | 0.549 | 0.00067 | −1.12822 | −2.0958 |
Wonju (2020) | WJ-II | 37°22′52.6″ N 127°53′36.1″ E | 2017.07 | 18 | 2 | 3 | 0.333 | 0.111 | 0.00031 | −1.71304 (p = 0.022) | 0.65061 |
Yeoncheon | YC | 37°58′35.6″ N 127°04′05.3″ E | 2017.07 | 5 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Yangsan | YS | 35°31′13.9″ N 129°00′40.1″ E | 2017.07 | 12 | 6 | 4 | 1.152 | 0.758 | 0.00107 | −0.45947 | −2.89747 |
Anyang (2018) | AY-I | 37°22′01.7″ N 126°57′39.0″ E | 2018.06 | 4 | 2 | 1 | 0.5 | 0.5 | 0.00046 | −0.61237 | 0.17185 |
Anyang (2020) | AY-II | 37°22′01.7″ N 126°57′39.0"E | 2020.08 | 4 | 4 | 6 | 3.167 | 1 | 0.00293 | −0.31446 | −1.15708 |
Chuncheon | CC | 37°53′15.0″ N 127°44′02.9″ E | 2017.08 | 7 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Cheongyang | CY | 36°24′28.5″ N 126°51′04.8″ E | 2017.09 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Daejeon | DJ | 36°21′02.3″ N 127°21′35.5″ E | 2017.09 | 8 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Gwacheon | GC | 37°26′00.0″ N 126°59′00.1″ E | 2020.07 | 7 | 3 | 2 | 0.571 | 0.524 | 0.00053 | −1.23716 | −0.9218 |
Geoje | GJ | 34°46′43.8″ N 128°38′42.1″ E | 2017.07 | 5 | 2 | 1 | 0.6 | 0.6 | 0.00056 | 1.22474 | 0.62615 |
Gwangju | GW | 35°07′53.0″ N 126°57′30.0″ E | 2017.09 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Gyeongju | GY | 35°50′41.4″ N 129°11′43.4″ E | 2017.07 | 2 | 2 | 3 | 3 | 1 | 0.00278 | 0 | 1.09861 |
Jeungdo | JD | 34°59′15.8″ N 126°08′07.3"E | 2017.07 | 5 | 3 | 2 | 1 | 0.8 | 0.00093 | 0.24314 | −0.47542 |
Jeonju | JJ | 35°50′37.2″ N 127°07′09.0″ E | 2017.08 | 28 | 3 | 2 | 0.143 | 0.14 | 0.00013 | −1.5106 (p = 0.045) | −2.26798 |
Sokcho | SC | 38°12′10.5″ N 128°33′07.5″ E | 2020.09 | 13 | 3 | 2 | 0.308 | 0.295 | 0.00028 | −1.46801 | −1.4015 |
Seoul | SE | 37°36′32.9″ N 126°54′06.5″ E | 2020.07 | 3 | 2 | 1 | 0.667 | 0.667 | 0.00062 | 0 | 0.20067 |
Yeoju | YJ | 37°18′43.5″ N 127°36′52.8″ E | 2020.07 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Yeosu | YE | 34°47′57.0″ N 127°44′52.4″ E | 2020.06 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
Tokyo, Japan | TJ | 35°33′01.2″ N 139°44′16.5″ E | 2018.09 | 35 | 3 | 3 | 0.561 | 0.301 | 0.00052 | −0.51759 | 0.39764 |
Vientiane, Laos | VL | 17°57′42.6″ N 102°36′30.2″ E | 2018.07 | 28 | 11 | 10 | 1.013 | 0.706 | 0.00094 | −1.94835 (p = 0.010) | −8.85951 |
Total/average | 211 | 38 | 41 | 1.426 | 0.678 | 0.00132 | −0.44959 | −0.80624 |
Source of Variation | df | Sum of Squares | Variance Components | Percentage of Variation (%) | F-Index * |
---|---|---|---|---|---|
Among groups | 2 | 67.077 | 0.58191 | 56.02 | 0.56024 |
Among populations within groups | 18 | 27.71 | 0.16776 | 16.15 | 0.36729 |
Within populations. | 190 | 54.91 | 0.28900 | 27.82 | 0.72176 |
Total | 210 | 149.697 | 1.03867 |
Source of Variation | df | Sum of Squares | Variance Components | Percentage of Variation (%) | F-Index |
---|---|---|---|---|---|
Among groups | 2 | 58.357 | −0.15670 | −2.78 | −0.02780 |
Among populations within groups | 16 | 336.027 | 1.33962 | 23.77 | 0.23124 |
Within populations | 243 | 1082.238 | 4.45365 | 79.01 | 0.20987 |
Total | 261 | 1476.622 |
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Shin, J.; Rahman, M.-M.; Kim, J.; Marcombe, S.; Jung, J. Genetic Diversity of Dengue Vector Aedes albopictus Collected from South Korea, Japan, and Laos. Insects 2023, 14, 297. https://doi.org/10.3390/insects14030297
Shin J, Rahman M-M, Kim J, Marcombe S, Jung J. Genetic Diversity of Dengue Vector Aedes albopictus Collected from South Korea, Japan, and Laos. Insects. 2023; 14(3):297. https://doi.org/10.3390/insects14030297
Chicago/Turabian StyleShin, Jiyeong, Md-Mafizur Rahman, Juil Kim, Sébastien Marcombe, and Jongwoo Jung. 2023. "Genetic Diversity of Dengue Vector Aedes albopictus Collected from South Korea, Japan, and Laos" Insects 14, no. 3: 297. https://doi.org/10.3390/insects14030297