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Genes 2018, 9(10), 481; https://doi.org/10.3390/genes9100481

Genotype Fingerprints Enable Fast and Private Comparison of Genetic Testing Results for Research and Direct-to-Consumer Applications

Institute for Systems Biology, 401 Terry Ave N, Seattle, WA 98109, USA
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Received: 31 August 2018 / Revised: 29 September 2018 / Accepted: 2 October 2018 / Published: 4 October 2018
(This article belongs to the Special Issue Algorithms for Personal Genomics)
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Abstract

Genetic testing has expanded out of the research laboratory into medical practice and the direct-to-consumer market. Rapid analysis of the resulting genotype data now has a significant impact. We present a method for summarizing personal genotypes as ‘genotype fingerprints’ that meets these needs. Genotype fingerprints can be derived from any single nucleotide polymorphism-based assay, and remain comparable as chip designs evolve to higher marker densities. We demonstrate that these fingerprints support distinguishing types of relationships among closely related individuals and closely related individuals from individuals from the same background population, as well as high-throughput identification of identical genotypes, individuals in known background populations, and de novo separation of subpopulations within a large cohort through extremely rapid comparisons. Although fingerprints do not preserve anonymity, they provide a useful degree of privacy by summarizing a genotype while preventing reconstruction of individual marker states. Genotype fingerprints are therefore well-suited as a format for public aggregation of genetic information to support ancestry and relatedness determination without revealing personal health risk status. View Full-Text
Keywords: computational genomics; genome comparison; algorithms; genetic testing; privacy; direct-to-consumer; study design; population genetics computational genomics; genome comparison; algorithms; genetic testing; privacy; direct-to-consumer; study design; population genetics
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Robinson, M.; Glusman, G. Genotype Fingerprints Enable Fast and Private Comparison of Genetic Testing Results for Research and Direct-to-Consumer Applications. Genes 2018, 9, 481.

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