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Genes, Volume 2, Issue 4

December 2011 - 21 articles

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Articles (21)

  • Communication
  • Open Access
47 Citations
11,421 Views
16 Pages

Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade

  • David J. Studholme,
  • Arthur Wasukira,
  • Konrad Paszkiewicz,
  • Valente Aritua,
  • Richard Thwaites,
  • Julian Smith and
  • Murray Grant

2 December 2011

We present draft genome sequences for three strains of Xanthomonas species, each of which was associated with banana plants (Musa species) but is not closely related to the previously sequenced banana-pathogen Xanthomonas campestris pathovar musacear...

  • Review
  • Open Access
41 Citations
32,016 Views
19 Pages

29 November 2011

The notion of antifragility, an attribute of systems that makes them thrive under variable conditions, has recently been proposed by Nassim Taleb in a business context. This idea requires the ability of such systems to ‘tinker’, i.e., to creatively r...

  • Article
  • Open Access
73 Citations
12,787 Views
16 Pages

Plant-Bacteria Association and Symbiosis: Are There Common Genomic Traits in Alphaproteobacteria?

  • Francesco Pini,
  • Marco Galardini,
  • Marco Bazzicalupo and
  • Alessio Mengoni

29 November 2011

Alphaproteobacteria show a great versatility in adapting to a broad range of environments and lifestyles, with the association between bacteria and plants as one of the most intriguing, spanning from relatively unspecific nonsymbiotic association (as...

  • Review
  • Open Access
66 Citations
11,383 Views
17 Pages

29 November 2011

In developed countries, more than half of all cancer patients receive radiotherapy at some stage in the management of their disease. However, a radiation-induced secondary malignancy can be the price of success if the primary cancer is cured or at le...

  • Review
  • Open Access
42 Citations
12,148 Views
18 Pages

Insights into Cross-Kingdom Plant Pathogenic Bacteria

  • Morgan W.B. Kirzinger,
  • Geetanchaly Nadarasah and
  • John Stavrinides

28 November 2011

Plant and human pathogens have evolved disease factors to successfully exploit their respective hosts. Phytopathogens utilize specific determinants that help to breach reinforced cell walls and manipulate plant physiology to facilitate the disease pr...

  • Article
  • Open Access
18 Citations
9,139 Views
23 Pages

Type Three Secretion System in Pseudomonas savastanoi Pathovars: Does Timing Matter?

  • Stefania Tegli,
  • Andrea Gori,
  • Matteo Cerboneschi,
  • Maria Grazia Cipriani and
  • Angelo Sisto

25 November 2011

Pseudomonas savastanoi pv. savastanoi is the causal agent of Olive knot disease, relying on the Type Three Secretion System (TTSS) for its pathogenicity. In this regard, nothing was known about the two other pathovars belonging to this species, pv. n...

  • Article
  • Open Access
18 Citations
10,015 Views
32 Pages

Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales

  • Jan Reinkensmeier,
  • Jan-Philip Schlüter,
  • Robert Giegerich and
  • Anke Becker

18 November 2011

Post-transcriptional regulation by trans-encoded sRNAs, for example via base-pairing with target mRNAs, is a common feature in bacteria and influences various cell processes, e.g., response to stress factors. Several studies based on computational an...

  • Article
  • Open Access
6 Citations
9,013 Views
13 Pages

Evolution and Quantitative Comparison of Genome-Wide Protein Domain Distributions

  • Arli A. Parikesit,
  • Peter F. Stadler and
  • Sonja J. Prohaska

9 November 2011

The metabolic and regulatory capabilities of an organism are implicit in its protein content. This is often hard to estimate, however, due to ascertainment biases inherent in the available genome annotations. Its complement of recognizable functional...

  • Article
  • Open Access
22 Citations
14,158 Views
43 Pages

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

  • Arshan Nasir,
  • Aisha Naeem,
  • Muhammad Jawad Khan,
  • Horacio D. Lopez Nicora and
  • Gustavo Caetano-Anollés

8 November 2011

The functional repertoire of a cell is largely embodied in its proteome, the collection of proteins encoded in the genome of an organism. The molecular functions of proteins are the direct consequence of their structure and structure can be inferred...

  • Article
  • Open Access
18 Citations
7,484 Views
16 Pages

Occurrence of Plasmids in the Aromatic Degrading Bacterioplankton of the Baltic Sea

  • Jekaterina Jutkina,
  • Eeva Heinaru,
  • Eve Vedler,
  • Jaanis Juhanson and
  • Ain Heinaru

4 November 2011

Plasmids are mobile genetic elements that provide their hosts with many beneficial traits including in some cases the ability to degrade different aromatic compounds. To fulfill the knowledge gap regarding catabolic plasmids of the Baltic Sea water,...

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Genes - ISSN 2073-4425Creative Common CC BY license