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Article

Isolation and Characterization of Microorganism Associated with Vanilla planifolia Produced in Different Production Systems in México

by
Dannia Fernanda Garrido-Fernández
1,
Lorena Jaqueline Gómez-Godínez
2,*,
Delfino Reyes-López
1,
Carlos Hugo Avendaño-Arrazate
2,
Ramón Ignacio Arteaga-Garibay
2,
José Martín Ruvalcaba-Gómez
2,
Carmela Hernández-Dominguez
1 and
Fernando López-Morales
1
1
Facultad de Ciencias Agrícolas y Pecuarias, Benemérita Universidad Autónoma de Puebla, Av. Universidad s/n, San Juan Acateno, Teziutlán 73965, Puebla, Mexico
2
Instituto Nacional de Investigaciones Forestales, Agrícolas y Pecuarias, Centro Nacional de Recursos Genéticos, Jalisco. Boulevar de la Biodiversidad 400, Tepatitlán de Morelos 47600, Jalisco, Mexico
*
Author to whom correspondence should be addressed.
Microbiol. Res. 2025, 16(11), 225; https://doi.org/10.3390/microbiolres16110225
Submission received: 12 September 2025 / Revised: 15 October 2025 / Accepted: 17 October 2025 / Published: 22 October 2025
(This article belongs to the Topic New Challenges on Plant–Microbe Interactions)

Abstract

The microbiota associated with Vanilla planifolia grown in three production systems in Puebla, México, was evaluated: shade cloth, cocuite, and acahual. Rhizosphere and soil samples were analyzed, from which bacteria, fungi, yeasts, and actinomycetes were isolated. The bacterial and actinomycete isolates were characterized morphologically and biochemically, and their potential as growth promoters was evaluated. Morphological and microscopic characteristics identified the fungi. In parallel, agronomic variables were measured in five plants per system, and the data were analyzed using ANOVA and Tukey’s test (p ≤ 0.05). The results showed that the shade cloth favored a greater number of internodes, total leaves, and biomass, although with a higher incidence of diseased leaves. The cocuite presented intermediate values, while the acahual had lower leaf density but fewer leaf health problems. Microbial composition varied across systems, with potentially beneficial bacteria and actinomycetes, as well as both beneficial and pathogenic fungi, being prominent. These findings demonstrate the influence of the management system on the microbiota and health of V. planifolia, providing a basis for more sustainable production strategies for vanilla cultivation in Mexico.
Keywords: Vanilla planifolia; microorganisms; Trichoderma spp.; isolation; identification Vanilla planifolia; microorganisms; Trichoderma spp.; isolation; identification

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MDPI and ACS Style

Garrido-Fernández, D.F.; Gómez-Godínez, L.J.; Reyes-López, D.; Avendaño-Arrazate, C.H.; Arteaga-Garibay, R.I.; Ruvalcaba-Gómez, J.M.; Hernández-Dominguez, C.; López-Morales, F. Isolation and Characterization of Microorganism Associated with Vanilla planifolia Produced in Different Production Systems in México. Microbiol. Res. 2025, 16, 225. https://doi.org/10.3390/microbiolres16110225

AMA Style

Garrido-Fernández DF, Gómez-Godínez LJ, Reyes-López D, Avendaño-Arrazate CH, Arteaga-Garibay RI, Ruvalcaba-Gómez JM, Hernández-Dominguez C, López-Morales F. Isolation and Characterization of Microorganism Associated with Vanilla planifolia Produced in Different Production Systems in México. Microbiology Research. 2025; 16(11):225. https://doi.org/10.3390/microbiolres16110225

Chicago/Turabian Style

Garrido-Fernández, Dannia Fernanda, Lorena Jaqueline Gómez-Godínez, Delfino Reyes-López, Carlos Hugo Avendaño-Arrazate, Ramón Ignacio Arteaga-Garibay, José Martín Ruvalcaba-Gómez, Carmela Hernández-Dominguez, and Fernando López-Morales. 2025. "Isolation and Characterization of Microorganism Associated with Vanilla planifolia Produced in Different Production Systems in México" Microbiology Research 16, no. 11: 225. https://doi.org/10.3390/microbiolres16110225

APA Style

Garrido-Fernández, D. F., Gómez-Godínez, L. J., Reyes-López, D., Avendaño-Arrazate, C. H., Arteaga-Garibay, R. I., Ruvalcaba-Gómez, J. M., Hernández-Dominguez, C., & López-Morales, F. (2025). Isolation and Characterization of Microorganism Associated with Vanilla planifolia Produced in Different Production Systems in México. Microbiology Research, 16(11), 225. https://doi.org/10.3390/microbiolres16110225

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