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Open AccessArticle

Transcriptomic Evaluation of Pulmonary Fibrosis-Related Genes: Utilization of Transgenic Mice with Modifying p38 Signal in the Lungs

1
Department of Biomedical Science, Graduate School of Medicine, Chiba University, Chiba City, Chiba 260-8670, Japan
2
Department of Respirology, Graduate School of Medicine, Chiba University, Chiba City, Chiba 260-8670, Japan
3
Life Science Center for Survival Dynamics, Tsukuba Advanced Research Alliance (TARA), University of Tsukuba, Tsukuba, Ibaraki 305-8577, Japan
4
Laboratory Animal Resource Center and Trans-Border Medical Research Center, University of Tsukuba, Tsukuba, Ibaraki 305-8575, Japan
5
Graduate School of Sciences and Technology, University of Tsukuba, Tsukuba, Ibaraki 305-8572, Japan
6
Department of Biochemistry and Molecular Pharmacology, Graduate School of Medicine, Chiba University, Chiba City, Chiba 260-8670, Japan
7
Chemical Biology Core Facility and Antibiotics Laboratory, RIKEN Advanced Science Institute, Wako, Saitama 351-0198, Japan
8
Department of Physiology, Graduate School of Medical and Dental Sciences, Kagoshima University, Kagoshima City, Kagoshima 890-8544, Japan
*
Author to whom correspondence should be addressed.
Int. J. Mol. Sci. 2020, 21(18), 6746; https://doi.org/10.3390/ijms21186746
Received: 31 July 2020 / Revised: 2 September 2020 / Accepted: 8 September 2020 / Published: 14 September 2020
(This article belongs to the Special Issue P38 Signaling Pathway)
Idiopathic pulmonary fibrosis (IPF) is a progressive fibrosing lung disease that is caused by the dysregulation of alveolar epithelial type II cells (AEC II). The mechanisms involved in the progression of IPF remain incompletely understood, although the immune response accompanied by p38 mitogen-activated protein kinase (MAPK) activation may contribute to some of them. This study aimed to examine the association of p38 activity in the lungs with bleomycin (BLM)-induced pulmonary fibrosis and its transcriptomic profiling. Accordingly, we evaluated BLM-induced pulmonary fibrosis during an active fibrosis phase in three genotypes of mice carrying stepwise variations in intrinsic p38 activity in the AEC II and performed RNA sequencing of their lungs. Stepwise elevation of p38 signaling in the lungs of the three genotypes was correlated with increased severity of BLM-induced pulmonary fibrosis exhibiting reduced static compliance and higher collagen content. Transcriptome analysis of these lung samples also showed that the enhanced p38 signaling in the lungs was associated with increased transcription of the genes driving the p38 MAPK pathway and differentially expressed genes elicited by BLM, including those related to fibrosis as well as the immune system. Our findings underscore the significance of p38 MAPK in the progression of pulmonary fibrosis. View Full-Text
Keywords: p38 mitogen-activated protein kinase; bleomycin-induced pulmonary fibrosis; idiopathic pulmonary fibrosis; RNA sequencing; alveolar epithelial type II cells p38 mitogen-activated protein kinase; bleomycin-induced pulmonary fibrosis; idiopathic pulmonary fibrosis; RNA sequencing; alveolar epithelial type II cells
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MDPI and ACS Style

Matsuda, S.; Kim, J.-D.; Sugiyama, F.; Matsuo, Y.; Ishida, J.; Murata, K.; Nakamura, K.; Namiki, K.; Sudo, T.; Kuwaki, T.; Hatano, M.; Tatsumi, K.; Fukamizu, A.; Kasuya, Y. Transcriptomic Evaluation of Pulmonary Fibrosis-Related Genes: Utilization of Transgenic Mice with Modifying p38 Signal in the Lungs. Int. J. Mol. Sci. 2020, 21, 6746. https://doi.org/10.3390/ijms21186746

AMA Style

Matsuda S, Kim J-D, Sugiyama F, Matsuo Y, Ishida J, Murata K, Nakamura K, Namiki K, Sudo T, Kuwaki T, Hatano M, Tatsumi K, Fukamizu A, Kasuya Y. Transcriptomic Evaluation of Pulmonary Fibrosis-Related Genes: Utilization of Transgenic Mice with Modifying p38 Signal in the Lungs. International Journal of Molecular Sciences. 2020; 21(18):6746. https://doi.org/10.3390/ijms21186746

Chicago/Turabian Style

Matsuda, Shuichi; Kim, Jun-Dal; Sugiyama, Fumihiro; Matsuo, Yuji; Ishida, Junji; Murata, Kazuya; Nakamura, Kanako; Namiki, Kana; Sudo, Tatsuhiko; Kuwaki, Tomoyuki; Hatano, Masahiko; Tatsumi, Koichiro; Fukamizu, Akiyoshi; Kasuya, Yoshitoshi. 2020. "Transcriptomic Evaluation of Pulmonary Fibrosis-Related Genes: Utilization of Transgenic Mice with Modifying p38 Signal in the Lungs" Int. J. Mol. Sci. 21, no. 18: 6746. https://doi.org/10.3390/ijms21186746

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